Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47078 * 90.98380 * 3 2 1 5 5 C 1.36909 * 119.99651 * 265.35791 * 4 3 2 6 6 H 1.07996 * 119.99981 * 205.24087 * 5 4 3 7 7 C 1.39024 * 119.99948 * 25.24755 * 5 4 3 8 8 N 1.31378 * 120.00149 * 19.52191 * 7 5 4 9 9 Si 1.86798 * 119.99733 * 199.52950 * 7 5 4 10 10 H 1.48504 * 109.47281 * 89.99927 * 9 7 5 11 11 H 1.48507 * 109.47027 * 209.99867 * 9 7 5 12 12 H 1.48498 * 109.47087 * 329.99598 * 9 7 5 13 13 C 1.34769 * 120.00343 * 85.35872 * 4 3 2 14 14 O 1.21632 * 120.00123 * 355.38672 * 13 4 3 15 15 C 1.47428 * 120.00520 * 175.38044 * 13 4 3 16 16 C 1.39769 * 120.19276 * 44.57583 * 15 13 4 17 17 C 1.37774 * 119.90166 * 179.97438 * 16 15 13 18 18 C 1.38557 * 120.30718 * 359.97438 * 17 16 15 19 19 C 1.38079 * 120.40248 * 0.02574 * 18 17 16 20 20 C 1.38686 * 120.08453 * 359.95525 * 19 18 17 21 21 O 1.35667 * 120.14932 * 179.97438 * 20 19 18 22 22 C 1.42898 * 117.00059 * 0.35966 * 21 20 19 23 23 C 1.52999 * 109.46995 * 154.87280 * 22 21 20 24 24 C 1.52997 * 109.47253 * 274.87460 * 22 21 20 25 25 H 4.40641 * 5.51321 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47528 * 330.98184 * 3 2 1 27 27 H 1.09003 * 109.46792 * 210.97759 * 3 2 1 28 28 H 0.97001 * 120.00270 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.05013 * 0.26177 * 16 15 13 30 30 H 1.08002 * 119.85049 * 179.97438 * 17 16 15 31 31 H 1.07995 * 119.80045 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.96165 * 179.97438 * 19 18 17 33 33 H 1.09004 * 109.46873 * 34.87596 * 22 21 20 34 34 H 1.08997 * 109.47402 * 60.00503 * 23 22 21 35 35 H 1.09001 * 109.46636 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.47165 * 299.99623 * 23 22 21 37 37 H 1.08998 * 109.47117 * 300.00299 * 24 22 21 38 38 H 1.08996 * 109.46973 * 60.00099 * 24 22 21 39 39 H 1.08997 * 109.47023 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0246 -1.3810 5 6 3.4535 -1.1464 -2.0146 6 1 4.1659 -1.1444 -2.8262 7 6 2.8604 -2.3380 -1.6131 8 7 1.7448 -2.3155 -0.9195 9 14 3.6498 -3.9710 -2.0597 10 1 4.5984 -4.3713 -0.9895 11 1 2.5961 -5.0080 -2.2006 12 1 4.3823 -3.8319 -3.3439 13 6 3.2694 1.1992 -2.0278 14 8 2.9074 2.2315 -1.4960 15 6 3.8561 1.2331 -3.3799 16 6 3.4621 0.2976 -4.3407 17 6 4.0138 0.3352 -5.6026 18 6 4.9579 1.2969 -5.9246 19 6 5.3563 2.2271 -4.9852 20 6 4.8113 2.2047 -3.7101 21 8 5.2021 3.1178 -2.7859 22 6 6.1749 4.0808 -3.1963 23 6 6.0428 5.3381 -2.3346 24 6 7.5772 3.4926 -3.0286 25 1 -1.0500 0.0002 0.0001 26 1 3.0098 -0.8978 0.4985 27 1 3.0089 0.8819 0.5290 28 1 1.3312 -3.1468 -0.6391 29 1 2.7228 -0.4507 -4.0958 30 1 3.7091 -0.3884 -6.3443 31 1 5.3848 1.3190 -6.9164 32 1 6.0929 2.9733 -5.2437 33 1 6.0117 4.3387 -4.2428 34 1 6.2059 5.0803 -1.2882 35 1 6.7845 6.0728 -2.6480 36 1 5.0437 5.7573 -2.4542 37 1 7.7403 3.2346 -1.9823 38 1 7.6713 2.5968 -3.6426 39 1 8.3191 4.2270 -3.3421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281569285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = 23.598621 kcal Electronic energy + Delta-G solvation = -23001.903638 eV Core-core repulsion = 19684.393947 eV Total energy + Delta-G solvation = -3317.509691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05289 -38.40020 -36.91375 -34.96988 -32.97909 -31.91848 -31.49339 -30.31472 -29.25796 -27.18868 -26.39117 -24.85385 -23.08559 -22.34726 -20.45594 -19.46107 -18.30218 -17.41417 -16.75563 -16.07299 -15.49775 -15.13997 -14.81424 -14.45939 -14.27776 -14.11930 -13.76011 -13.39205 -12.97786 -12.74002 -12.53996 -12.22632 -12.18877 -11.97344 -11.87308 -11.69196 -11.52519 -11.25856 -11.10420 -10.91584 -10.63795 -10.50756 -10.44127 -10.27153 -9.25818 -9.22202 -8.67784 -8.47669 -8.25898 -7.82012 -7.65237 -6.31546 -3.95838 1.64998 1.94387 3.11638 3.21706 3.23275 3.54545 3.78727 3.98812 4.16536 4.38009 4.40907 4.84763 4.92662 4.99290 5.09717 5.10070 5.28108 5.40899 5.54637 5.57171 5.71983 5.76765 5.78487 5.83803 5.89639 6.05710 6.19318 6.23754 6.30018 6.46044 6.62426 6.78662 6.84118 6.86555 7.04582 7.24393 7.31917 7.42888 7.74163 7.91471 8.34941 9.05841 9.11477 9.47239 9.89802 10.64343 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.006253 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.994070 B = 4476.761589 C = 5367.878610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.096 4.096 3 C 0.246 3.754 4 N -0.433 5.433 5 C -0.349 4.349 6 H 0.103 0.897 7 C 0.040 3.960 8 N -0.845 5.845 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.512 3.488 14 O -0.585 6.585 15 C -0.123 4.123 16 C -0.030 4.030 17 C -0.177 4.177 18 C -0.077 4.077 19 C -0.231 4.231 20 C 0.164 3.836 21 O -0.285 6.285 22 C 0.072 3.928 23 C -0.146 4.146 24 C -0.178 4.178 25 H 0.195 0.805 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.270 0.730 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 6.125 -6.115 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.098 4.098 3 C 0.123 3.877 4 N -0.151 5.151 5 C -0.476 4.476 6 H 0.120 0.880 7 C -0.167 4.167 8 N -0.480 5.480 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.301 3.699 14 O -0.470 6.470 15 C -0.127 4.127 16 C -0.049 4.049 17 C -0.196 4.196 18 C -0.096 4.096 19 C -0.250 4.250 20 C 0.117 3.883 21 O -0.198 6.198 22 C 0.016 3.984 23 C -0.203 4.203 24 C -0.235 4.235 25 H 0.213 0.787 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.754 6.497 -5.513 11.520 hybrid contribution 0.238 -1.157 -0.517 1.289 sum 7.992 5.340 -6.030 11.346 Atomic orbital electron populations 1.24086 0.95207 1.07268 1.02393 1.22959 0.94187 0.94635 0.98014 1.17943 0.84552 1.00694 0.84494 1.43458 1.56051 1.05314 1.10276 1.19687 1.24438 0.83859 1.19611 0.87959 1.25330 0.94465 0.99590 0.97291 1.70078 1.14090 1.27988 1.35854 0.86158 0.78949 0.81775 0.79245 1.20284 1.21009 1.19272 1.17828 0.82997 0.84070 0.84997 1.90658 1.54517 1.33560 1.68226 1.19381 0.99891 0.96758 0.96636 1.21605 0.97152 0.95070 0.91049 1.20970 1.00543 1.00874 0.97171 1.20889 0.96352 0.94136 0.98190 1.21030 1.06321 1.03966 0.93650 1.19004 0.92665 0.88848 0.87808 1.86311 1.56185 1.40213 1.37087 1.22412 0.87837 0.88970 0.99223 1.21806 1.02708 0.95009 1.00789 1.22357 0.96021 1.01640 1.03504 0.78746 0.88830 0.91414 0.91950 0.83210 0.86177 0.86513 0.85747 0.91205 0.91431 0.91087 0.91570 0.91421 0.91889 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.37 19.17 29.55 0.57 -5.80 16 2 C -0.10 -2.44 11.11 -37.12 -0.41 -2.85 16 3 C 0.25 6.11 5.06 -6.83 -0.03 6.08 16 4 N -0.43 -11.17 2.57 -119.16 -0.31 -11.47 16 5 C -0.35 -8.72 7.28 -14.99 -0.11 -8.83 16 6 H 0.10 2.48 5.69 -52.49 -0.30 2.18 16 7 C 0.04 0.99 4.87 -17.45 -0.08 0.91 16 8 N -0.84 -21.79 9.53 55.50 0.53 -21.26 16 9 Si 0.91 19.16 29.60 -169.99 -5.03 14.13 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.51 13.27 6.97 -12.52 -0.09 13.18 16 14 O -0.58 -16.52 16.04 -7.88 -0.13 -16.65 16 15 C -0.12 -2.76 5.20 -104.85 -0.54 -3.31 16 16 C -0.03 -0.61 7.54 -39.18 -0.30 -0.90 16 17 C -0.18 -2.93 10.02 -39.63 -0.40 -3.33 16 18 C -0.08 -1.15 10.03 -39.52 -0.40 -1.55 16 19 C -0.23 -3.69 8.34 -39.47 -0.33 -4.02 16 20 C 0.16 3.25 6.58 -38.68 -0.25 2.99 16 21 O -0.29 -5.59 8.71 -31.83 -0.28 -5.87 16 22 C 0.07 1.01 2.85 -26.73 -0.08 0.93 16 23 C -0.15 -1.77 9.56 37.16 0.36 -1.42 16 24 C -0.18 -2.12 9.25 37.16 0.34 -1.78 16 25 H 0.20 3.79 7.80 -54.09 -0.42 3.37 16 26 H 0.09 2.29 7.03 -51.93 -0.36 1.93 16 27 H 0.07 1.62 7.64 -51.93 -0.40 1.23 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.15 3.23 6.55 -52.48 -0.34 2.88 16 30 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.62 5.61 -52.49 -0.29 1.33 16 33 H 0.07 0.87 6.04 -51.93 -0.31 0.56 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.78 7.30 -51.93 -0.38 0.40 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -31.04 330.38 -6.90 -37.94 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.91 Total: 7.92 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.76 Total: -9.70 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.22 Total: -32.74 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.40 Total: -22.52 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.04 -6.90 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281569285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.540 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds