Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47078 * 90.98380 * 3 2 1 5 5 C 1.36909 * 119.99651 * 265.35791 * 4 3 2 6 6 H 1.07996 * 119.99981 * 205.24087 * 5 4 3 7 7 C 1.39024 * 119.99948 * 25.24755 * 5 4 3 8 8 N 1.31378 * 120.00149 * 19.52191 * 7 5 4 9 9 Si 1.86798 * 119.99733 * 199.52950 * 7 5 4 10 10 H 1.48504 * 109.47281 * 89.99927 * 9 7 5 11 11 H 1.48507 * 109.47027 * 209.99867 * 9 7 5 12 12 H 1.48498 * 109.47087 * 329.99598 * 9 7 5 13 13 C 1.34769 * 120.00343 * 85.35872 * 4 3 2 14 14 O 1.21632 * 120.00123 * 355.38672 * 13 4 3 15 15 C 1.47428 * 120.00520 * 175.38044 * 13 4 3 16 16 C 1.39769 * 120.19276 * 44.57583 * 15 13 4 17 17 C 1.37774 * 119.90166 * 179.97438 * 16 15 13 18 18 C 1.38557 * 120.30718 * 359.97438 * 17 16 15 19 19 C 1.38079 * 120.40248 * 0.02574 * 18 17 16 20 20 C 1.38686 * 120.08453 * 359.95525 * 19 18 17 21 21 O 1.35667 * 120.14932 * 179.97438 * 20 19 18 22 22 C 1.42898 * 117.00059 * 0.35966 * 21 20 19 23 23 C 1.52999 * 109.46995 * 154.87280 * 22 21 20 24 24 C 1.52997 * 109.47253 * 274.87460 * 22 21 20 25 25 H 4.40641 * 5.51321 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47528 * 330.98184 * 3 2 1 27 27 H 1.09003 * 109.46792 * 210.97759 * 3 2 1 28 28 H 0.97001 * 120.00270 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.05013 * 0.26177 * 16 15 13 30 30 H 1.08002 * 119.85049 * 179.97438 * 17 16 15 31 31 H 1.07995 * 119.80045 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.96165 * 179.97438 * 19 18 17 33 33 H 1.09004 * 109.46873 * 34.87596 * 22 21 20 34 34 H 1.08997 * 109.47402 * 60.00503 * 23 22 21 35 35 H 1.09001 * 109.46636 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.47165 * 299.99623 * 23 22 21 37 37 H 1.08998 * 109.47117 * 300.00299 * 24 22 21 38 38 H 1.08996 * 109.46973 * 60.00099 * 24 22 21 39 39 H 1.08997 * 109.47023 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0246 -1.3810 5 6 3.4535 -1.1464 -2.0146 6 1 4.1659 -1.1444 -2.8262 7 6 2.8604 -2.3380 -1.6131 8 7 1.7448 -2.3155 -0.9195 9 14 3.6498 -3.9710 -2.0597 10 1 4.5984 -4.3713 -0.9895 11 1 2.5961 -5.0080 -2.2006 12 1 4.3823 -3.8319 -3.3439 13 6 3.2694 1.1992 -2.0278 14 8 2.9074 2.2315 -1.4960 15 6 3.8561 1.2331 -3.3799 16 6 3.4621 0.2976 -4.3407 17 6 4.0138 0.3352 -5.6026 18 6 4.9579 1.2969 -5.9246 19 6 5.3563 2.2271 -4.9852 20 6 4.8113 2.2047 -3.7101 21 8 5.2021 3.1178 -2.7859 22 6 6.1749 4.0808 -3.1963 23 6 6.0428 5.3381 -2.3346 24 6 7.5772 3.4926 -3.0286 25 1 -1.0500 0.0002 0.0001 26 1 3.0098 -0.8978 0.4985 27 1 3.0089 0.8819 0.5290 28 1 1.3312 -3.1468 -0.6391 29 1 2.7228 -0.4507 -4.0958 30 1 3.7091 -0.3884 -6.3443 31 1 5.3848 1.3190 -6.9164 32 1 6.0929 2.9733 -5.2437 33 1 6.0117 4.3387 -4.2428 34 1 6.2059 5.0803 -1.2882 35 1 6.7845 6.0728 -2.6480 36 1 5.0437 5.7573 -2.4542 37 1 7.7403 3.2346 -1.9823 38 1 7.6713 2.5968 -3.6426 39 1 8.3191 4.2270 -3.3421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281569285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = 6.590631 kcal Electronic energy + Delta-G solvation = -23002.641159 eV Core-core repulsion = 19684.393947 eV Total energy + Delta-G solvation = -3318.247212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50411 -40.12263 -38.31076 -36.93911 -34.10366 -33.80546 -33.37071 -31.85576 -30.62331 -28.28051 -28.14386 -26.74860 -24.40631 -23.81762 -21.67416 -21.20788 -20.01062 -19.02480 -18.38053 -17.92102 -16.91127 -16.50491 -16.34296 -16.19913 -15.75807 -15.64697 -15.36562 -14.83931 -14.45453 -14.21362 -13.99296 -13.87566 -13.56280 -13.46431 -13.19167 -13.07738 -12.84705 -12.75023 -12.61330 -12.40119 -12.15488 -12.07891 -11.70979 -11.47769 -11.17947 -11.16016 -10.61856 -10.35507 -9.82674 -9.71183 -9.04279 -8.20911 -5.92035 0.22490 0.57718 1.43762 1.48745 1.58962 1.98617 2.14736 2.34018 2.34814 2.44440 2.88639 3.07321 3.29621 3.83408 3.91756 3.95523 4.02249 4.08661 4.21005 4.32954 4.42662 4.56229 4.67327 4.69811 4.71832 4.79239 4.83172 4.86665 4.99045 5.11428 5.20185 5.28217 5.37590 5.42147 5.47326 5.54424 5.65791 5.81403 5.98640 6.40841 6.63925 7.12382 7.18196 7.53370 7.96322 8.75261 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.006253 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.994070 B = 4476.761589 C = 5367.878610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.141 4.141 3 C 0.247 3.753 4 N -0.442 5.442 5 C -0.360 4.360 6 H 0.107 0.893 7 C 0.002 3.998 8 N -0.872 5.872 9 Si 0.981 3.019 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.257 1.257 13 C 0.499 3.501 14 O -0.626 6.626 15 C -0.170 4.170 16 C -0.045 4.045 17 C -0.173 4.173 18 C -0.056 4.056 19 C -0.221 4.221 20 C 0.152 3.848 21 O -0.323 6.323 22 C 0.059 3.941 23 C -0.144 4.144 24 C -0.171 4.171 25 H 0.233 0.767 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.269 0.731 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 6.077 -9.159 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.143 4.143 3 C 0.124 3.876 4 N -0.159 5.159 5 C -0.487 4.487 6 H 0.125 0.875 7 C -0.202 4.202 8 N -0.508 5.508 9 Si 0.805 3.195 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.181 1.181 13 C 0.290 3.710 14 O -0.514 6.514 15 C -0.173 4.173 16 C -0.064 4.064 17 C -0.191 4.191 18 C -0.074 4.074 19 C -0.240 4.240 20 C 0.105 3.895 21 O -0.237 6.237 22 C 0.004 3.996 23 C -0.201 4.201 24 C -0.229 4.229 25 H 0.249 0.751 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.142 0.858 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.178 0.822 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.650 6.446 -8.564 14.423 hybrid contribution -0.349 -1.043 0.396 1.169 sum 9.301 5.403 -8.169 13.506 Atomic orbital electron populations 1.24997 0.96226 1.05517 1.00673 1.23327 0.94978 0.96291 0.99695 1.17869 0.85002 1.00080 0.84656 1.43691 1.55912 1.05852 1.10451 1.19920 1.24758 0.83901 1.20084 0.87541 1.26133 0.94591 1.02464 0.97044 1.70204 1.15174 1.28621 1.36794 0.85101 0.77855 0.77229 0.79301 1.20163 1.21039 1.18052 1.18544 0.82573 0.83430 0.86410 1.90586 1.56337 1.34720 1.69753 1.19328 1.02840 0.99907 0.95262 1.21428 0.97665 0.94612 0.92649 1.21302 1.00138 1.01808 0.95887 1.21457 0.94260 0.91882 0.99837 1.21434 1.06007 1.04663 0.91870 1.19210 0.92558 0.88409 0.89352 1.86278 1.57766 1.41129 1.38551 1.22862 0.87747 0.88446 1.00576 1.21862 1.03153 0.95233 0.99872 1.22325 0.95557 1.02408 1.02563 0.75073 0.89291 0.91941 0.92061 0.85824 0.83123 0.81447 0.82216 0.89161 0.92958 0.87106 0.93023 0.93050 0.92276 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.21 19.17 74.32 1.42 -10.78 16 2 C -0.14 -7.48 11.11 31.12 0.35 -7.13 16 3 C 0.25 13.06 5.06 84.57 0.43 13.49 16 4 N -0.44 -24.10 2.57 -649.16 -1.67 -25.77 16 5 C -0.36 -18.65 7.28 84.09 0.61 -18.04 16 6 H 0.11 5.32 5.69 -2.91 -0.02 5.31 16 7 C 0.00 0.10 4.87 84.95 0.41 0.51 16 8 N -0.87 -46.14 9.53 21.68 0.21 -45.93 16 9 Si 0.98 39.50 29.60 68.60 2.03 41.53 16 10 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 11 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 13 C 0.50 27.47 6.97 86.67 0.60 28.07 16 14 O -0.63 -37.81 16.04 8.42 0.14 -37.67 16 15 C -0.17 -7.89 5.20 -20.01 -0.10 -7.99 16 16 C -0.04 -1.82 7.54 22.53 0.17 -1.65 16 17 C -0.17 -5.25 10.02 22.24 0.22 -5.03 16 18 C -0.06 -1.42 10.03 22.31 0.22 -1.20 16 19 C -0.22 -6.35 8.34 22.34 0.19 -6.16 16 20 C 0.15 6.00 6.58 22.85 0.15 6.15 16 21 O -0.32 -12.93 8.71 -77.28 -0.67 -13.60 16 22 C 0.06 1.56 2.85 30.59 0.09 1.64 16 23 C -0.14 -3.37 9.56 71.98 0.69 -2.68 16 24 C -0.17 -3.71 9.25 71.98 0.67 -3.04 16 25 H 0.23 8.77 7.80 -4.42 -0.03 8.74 16 26 H 0.09 4.65 7.03 -2.39 -0.02 4.63 16 27 H 0.06 3.26 7.64 -2.39 -0.02 3.24 16 28 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 29 H 0.12 5.57 6.55 -2.91 -0.02 5.55 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 3.38 5.61 -2.91 -0.02 3.36 16 33 H 0.09 1.97 6.04 -2.38 -0.01 1.95 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.32 7.30 -2.39 -0.02 1.30 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.51 330.38 7.20 -65.31 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 1.05 Total: 29.98 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 6.12 Total: -13.84 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.46 Total: -71.70 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.54 Total: -51.28 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -72.51 7.20 -65.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281569285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.904 kcal (2) G-P(sol) polarization free energy of solvation -72.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds