Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99931 * 13 11 9 17 17 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 18 18 C 1.33997 * 124.92337 * 99.71491 * 17 2 1 19 19 C 1.46792 * 106.18297 * 179.89930 * 18 17 2 20 20 C 1.39404 * 134.36684 * 180.11767 * 19 18 17 21 21 C 1.36736 * 119.71391 * 180.27138 * 20 19 18 22 22 C 1.38747 * 120.42041 * 359.97438 * 21 20 19 23 23 C 1.37849 * 120.67973 * 0.02562 * 22 21 20 24 24 C 1.38939 * 119.82070 * 0.02562 * 23 22 21 25 25 O 1.34454 * 124.92290 * 280.02882 * 17 2 1 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 28 28 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 30 30 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 31 31 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 32 32 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 33 33 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 34 34 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 35 35 H 1.07999 * 126.90605 * 0.03240 * 18 17 2 36 36 H 1.08001 * 120.14359 * 0.28864 * 20 19 18 37 37 H 1.07997 * 119.79047 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.65946 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.08671 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7010 0.2547 4.7588 9 6 3.2034 -0.4556 5.9893 10 1 3.4602 -1.5035 5.9408 11 6 3.3361 0.2324 7.1766 12 7 3.0238 1.5086 7.2355 13 14 3.9596 -0.6479 8.7017 14 1 5.4396 -0.5436 8.7632 15 1 3.3684 -0.0213 9.9113 16 1 3.5662 -2.0786 8.6429 17 6 2.0324 -0.7104 -1.2304 18 6 2.4629 -0.1033 -2.3447 19 6 2.8536 -1.1744 -3.2693 20 6 3.3713 -1.2045 -4.5632 21 6 3.6286 -2.4063 -5.1625 22 6 3.3780 -3.5942 -4.4909 23 6 2.8661 -3.5840 -3.2110 24 6 2.5967 -2.3737 -2.5842 25 8 2.1080 -2.0454 -1.3714 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2490 -1.6316 1.1527 30 1 1.9759 -1.5504 3.8327 31 1 3.6480 -1.1212 3.3986 32 1 3.3741 1.0762 4.5137 33 1 1.7020 0.6476 4.9480 34 1 3.1168 1.9927 8.0709 35 1 2.5143 0.9602 -2.5252 36 1 3.5687 -0.2825 -5.0899 37 1 4.0301 -2.4310 -6.1648 38 1 3.5853 -4.5365 -4.9761 39 1 2.6751 -4.5144 -2.6968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290938858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -23.073003 kcal Electronic energy + Delta-G solvation = -21317.279244 eV Core-core repulsion = 17997.745720 eV Total energy + Delta-G solvation = -3319.533524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.74689 -39.35957 -38.16236 -35.54433 -33.45220 -33.04552 -31.49860 -30.69827 -30.39530 -28.72098 -25.82659 -24.27680 -23.07696 -22.18666 -21.50186 -20.79240 -19.68462 -17.64825 -17.42895 -16.90816 -16.42833 -16.01519 -15.66400 -15.07362 -14.89839 -14.42668 -14.33867 -13.98820 -13.66652 -13.38204 -13.17755 -13.03826 -12.56147 -12.30754 -12.25396 -12.08595 -11.97918 -11.53520 -11.24054 -11.15876 -10.92567 -10.59662 -10.38328 -9.95985 -9.68211 -9.22263 -9.05839 -8.97182 -8.89534 -8.41312 -8.31744 -5.95907 -4.00192 0.60958 1.07572 2.05276 2.37345 3.18745 3.33833 3.38180 3.40754 3.42980 3.45567 4.06035 4.37612 4.47955 4.64230 4.79999 4.83333 4.96633 5.02335 5.07934 5.18491 5.39103 5.39144 5.45842 5.56327 5.62181 5.82199 5.89469 5.95978 6.09872 6.13456 6.14809 6.22221 6.24236 6.34651 6.58441 6.88199 6.94147 7.74335 7.80181 7.85960 8.07012 8.38475 8.70034 9.08135 9.63347 11.15057 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.002748 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.386367 B =10185.465583 C =10708.245451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.221 3.779 3 H 0.118 0.882 4 N -0.741 5.741 5 C 0.514 3.486 6 O -0.532 6.532 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.037 3.963 18 C -0.199 4.199 19 C -0.128 4.128 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.097 4.097 23 C -0.106 4.106 24 C 0.053 3.947 25 O -0.188 6.188 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.403 0.597 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -8.896 -25.831 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.115 3.885 3 H 0.136 0.864 4 N -0.396 5.396 5 C 0.303 3.697 6 O -0.407 6.407 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.011 4.011 18 C -0.218 4.218 19 C -0.129 4.129 20 C -0.090 4.090 21 C -0.156 4.156 22 C -0.115 4.115 23 C -0.124 4.124 24 C 0.005 3.995 25 O -0.090 6.090 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.847 -8.056 -25.435 26.745 hybrid contribution 0.505 -0.801 0.661 1.155 sum -1.342 -8.857 -24.775 26.345 Atomic orbital electron populations 1.22233 0.93446 1.02985 1.03451 1.19537 0.94657 0.95805 0.78459 0.86424 1.46310 1.69658 1.14385 1.09216 1.21629 0.76159 0.87603 0.84308 1.90671 1.48960 1.16280 1.84750 1.21886 1.01038 1.01110 0.92923 1.18907 0.98404 0.93304 0.89427 1.21220 1.44350 0.96351 0.94614 0.92598 1.25024 0.95554 0.94856 0.98962 1.69994 1.48128 1.08135 1.26596 0.86587 0.78958 0.79733 0.82650 1.20673 1.21218 1.19889 1.22562 1.00611 0.80182 0.97718 1.22243 1.06869 0.99698 0.93013 1.19949 1.04134 0.92659 0.96128 1.20301 0.97494 0.98623 0.92535 1.20782 1.02174 0.92059 1.00545 1.20932 0.98422 0.98773 0.93349 1.19975 1.02857 0.94430 0.95133 1.19650 0.99946 0.95662 0.84199 1.83929 1.69051 1.23688 1.32298 0.90337 0.91344 0.91944 0.76301 0.90067 0.90129 0.95789 0.95754 0.92948 0.82149 0.85496 0.85381 0.84801 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.47 37.16 0.35 -1.54 16 2 C 0.22 2.82 3.01 -69.09 -0.21 2.62 16 3 H 0.12 1.59 7.55 -51.93 -0.39 1.19 16 4 N -0.74 -10.73 5.07 -54.94 -0.28 -11.01 16 5 C 0.51 9.75 7.79 -10.98 -0.09 9.67 16 6 O -0.53 -12.09 15.64 5.56 0.09 -12.00 16 7 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 8 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 9 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.04 0.45 6.05 -35.80 -0.22 0.23 16 18 C -0.20 -2.20 10.99 -37.62 -0.41 -2.62 16 19 C -0.13 -1.43 6.40 -105.16 -0.67 -2.11 16 20 C -0.07 -0.64 10.05 -39.69 -0.40 -1.04 16 21 C -0.14 -1.04 9.98 -39.94 -0.40 -1.43 16 22 C -0.10 -0.72 10.01 -39.54 -0.40 -1.12 16 23 C -0.11 -0.97 10.07 -39.46 -0.40 -1.37 16 24 C 0.05 0.62 7.42 -38.48 -0.29 0.33 16 25 O -0.19 -2.35 10.19 3.90 0.04 -2.31 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.40 5.06 8.27 -40.82 -0.34 4.73 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -34.16 339.83 -8.46 -42.62 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.34 Total: 1.59 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -3.81 Total: -14.01 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.46 Total: -37.74 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.13 Total: -14.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.16 -8.46 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290938858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.552 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds