Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99931 * 13 11 9 17 17 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 18 18 C 1.33997 * 124.92337 * 99.71491 * 17 2 1 19 19 C 1.46792 * 106.18297 * 179.89930 * 18 17 2 20 20 C 1.39404 * 134.36684 * 180.11767 * 19 18 17 21 21 C 1.36736 * 119.71391 * 180.27138 * 20 19 18 22 22 C 1.38747 * 120.42041 * 359.97438 * 21 20 19 23 23 C 1.37849 * 120.67973 * 0.02562 * 22 21 20 24 24 C 1.38939 * 119.82070 * 0.02562 * 23 22 21 25 25 O 1.34454 * 124.92290 * 280.02882 * 17 2 1 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 28 28 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 29 29 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 30 30 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 31 31 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 32 32 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 33 33 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 34 34 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 35 35 H 1.07999 * 126.90605 * 0.03240 * 18 17 2 36 36 H 1.08001 * 120.14359 * 0.28864 * 20 19 18 37 37 H 1.07997 * 119.79047 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.65946 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.08671 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 6 2.7010 0.2547 4.7588 9 6 3.2034 -0.4556 5.9893 10 1 3.4602 -1.5035 5.9408 11 6 3.3361 0.2324 7.1766 12 7 3.0238 1.5086 7.2355 13 14 3.9596 -0.6479 8.7017 14 1 5.4396 -0.5436 8.7632 15 1 3.3684 -0.0213 9.9113 16 1 3.5662 -2.0786 8.6429 17 6 2.0324 -0.7104 -1.2304 18 6 2.4629 -0.1033 -2.3447 19 6 2.8536 -1.1744 -3.2693 20 6 3.3713 -1.2045 -4.5632 21 6 3.6286 -2.4063 -5.1625 22 6 3.3780 -3.5942 -4.4909 23 6 2.8661 -3.5840 -3.2110 24 6 2.5967 -2.3737 -2.5842 25 8 2.1080 -2.0454 -1.3714 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.2490 -1.6316 1.1527 30 1 1.9759 -1.5504 3.8327 31 1 3.6480 -1.1212 3.3986 32 1 3.3741 1.0762 4.5137 33 1 1.7020 0.6476 4.9480 34 1 3.1168 1.9927 8.0709 35 1 2.5143 0.9602 -2.5252 36 1 3.5687 -0.2825 -5.0899 37 1 4.0301 -2.4310 -6.1648 38 1 3.5853 -4.5365 -4.9761 39 1 2.6751 -4.5144 -2.6968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290938858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -44.401481 kcal Electronic energy + Delta-G solvation = -21318.204116 eV Core-core repulsion = 17997.745720 eV Total energy + Delta-G solvation = -3320.458396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.55170 -40.82610 -38.87647 -36.79481 -35.54440 -33.95275 -33.15856 -31.82830 -31.36321 -29.55591 -27.75006 -25.35857 -23.92500 -23.57817 -22.53171 -21.81065 -21.19625 -18.92797 -18.37325 -18.27941 -17.56608 -17.27807 -16.75749 -16.50893 -16.36635 -16.00187 -15.11971 -14.90408 -14.89181 -14.59107 -14.25625 -14.16933 -14.05853 -13.62703 -13.26610 -13.22376 -13.08633 -12.82562 -12.78532 -12.55274 -12.47162 -11.92515 -11.88574 -11.64914 -11.30863 -11.16770 -10.79422 -10.57087 -10.27275 -9.61103 -9.17655 -8.18074 -6.31840 -0.10934 0.38701 1.22747 1.42075 1.44676 1.52402 1.55611 1.68497 2.14852 2.43936 2.76835 3.14933 3.20521 3.68363 3.88945 3.96163 4.06943 4.11494 4.12721 4.24078 4.38616 4.48993 4.51840 4.54200 4.62276 4.68214 4.79258 4.90653 5.06498 5.09633 5.21178 5.29775 5.32977 5.44096 5.50283 5.51608 5.63521 5.74044 5.85451 6.15152 6.17888 6.47395 6.86185 7.23847 7.38198 8.94533 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.002748 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.386367 B =10185.465583 C =10708.245451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.222 3.778 3 H 0.109 0.891 4 N -0.720 5.720 5 C 0.519 3.481 6 O -0.578 6.578 7 C -0.120 4.120 8 C 0.043 3.957 9 C -0.544 4.544 10 H 0.074 0.926 11 C -0.007 4.007 12 N -0.937 5.937 13 Si 0.973 3.027 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.256 1.256 17 C 0.020 3.980 18 C -0.194 4.194 19 C -0.153 4.153 20 C -0.081 4.081 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.121 4.121 24 C 0.026 3.974 25 O -0.201 6.201 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.415 0.585 30 H 0.105 0.895 31 H 0.102 0.898 32 H -0.016 1.016 33 H -0.014 1.014 34 H 0.263 0.737 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 -11.532 -27.648 29.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.118 3.882 3 H 0.126 0.874 4 N -0.374 5.374 5 C 0.308 3.692 6 O -0.456 6.456 7 C -0.160 4.160 8 C 0.005 3.995 9 C -0.582 4.582 10 H 0.092 0.908 11 C -0.204 4.204 12 N -0.577 5.577 13 Si 0.797 3.203 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.180 1.180 17 C -0.028 4.028 18 C -0.214 4.214 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.139 4.139 24 C -0.020 4.020 25 O -0.103 6.103 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.251 0.749 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.003 0.997 33 H 0.004 0.996 34 H 0.072 0.928 35 H 0.194 0.806 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.938 -10.747 -27.303 29.357 hybrid contribution 0.247 -0.022 1.036 1.065 sum -0.691 -10.769 -26.267 28.397 Atomic orbital electron populations 1.22170 0.92459 1.03372 1.03450 1.19549 0.95404 0.95333 0.77954 0.87352 1.46032 1.68067 1.14762 1.08545 1.21292 0.75892 0.86868 0.85174 1.90659 1.51278 1.18160 1.85550 1.21655 1.03107 0.99915 0.91307 1.18689 0.95015 0.93628 0.92154 1.21709 1.43965 0.97274 0.95210 0.90763 1.26121 0.95636 0.95592 1.03052 1.70169 1.49562 1.10227 1.27711 0.85331 0.78446 0.79000 0.77532 1.19732 1.21100 1.18012 1.22269 1.02477 0.80433 0.97600 1.22546 1.05468 1.00636 0.92736 1.20224 1.05477 0.92422 0.97283 1.20648 0.97128 1.00246 0.91853 1.21227 1.00886 0.91442 1.01726 1.21409 0.96373 1.00314 0.92491 1.20352 1.03256 0.94251 0.96022 1.20134 1.00904 0.96887 0.84120 1.83870 1.69690 1.23658 1.33127 0.92415 0.89216 0.91308 0.74869 0.87727 0.87972 0.99740 0.99598 0.92831 0.80604 0.83734 0.82306 0.81547 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.47 71.98 0.68 -2.95 16 2 C 0.22 5.73 3.01 44.24 0.13 5.87 16 3 H 0.11 3.02 7.55 -2.39 -0.02 3.01 16 4 N -0.72 -20.85 5.07 -446.11 -2.26 -23.11 16 5 C 0.52 20.14 7.79 87.66 0.68 20.83 16 6 O -0.58 -27.61 15.64 -3.03 -0.05 -27.65 16 7 C -0.12 -4.89 5.64 29.85 0.17 -4.73 16 8 C 0.04 2.39 4.26 29.85 0.13 2.52 16 9 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 10 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 11 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 12 N -0.94 -59.63 13.29 21.45 0.28 -59.34 16 13 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 17 C 0.02 0.48 6.05 24.72 0.15 0.63 16 18 C -0.19 -4.21 10.99 23.54 0.26 -3.95 16 19 C -0.15 -3.27 6.40 -20.21 -0.13 -3.40 16 20 C -0.08 -1.27 10.05 22.20 0.22 -1.05 16 21 C -0.14 -1.59 9.98 22.04 0.22 -1.37 16 22 C -0.09 -1.03 10.01 22.30 0.22 -0.81 16 23 C -0.12 -2.00 10.07 22.35 0.23 -1.77 16 24 C 0.03 0.59 7.42 22.99 0.17 0.76 16 25 O -0.20 -4.95 10.19 -8.97 -0.09 -5.05 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.41 10.08 8.27 -92.71 -0.77 9.32 16 30 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.10 3.71 8.14 -2.39 -0.02 3.70 16 32 H -0.02 -1.00 8.10 -2.38 -0.02 -1.02 16 33 H -0.01 -0.91 8.10 -2.39 -0.02 -0.92 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -77.25 339.83 4.03 -73.22 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.29 Total: 15.60 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 3.83 Total: -20.31 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.98 Total: -82.45 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.14 Total: -32.70 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.25 4.03 -73.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290938858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.814 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds