Wall clock time and date at job start Tue Mar 31 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21275 * 120.00678 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99690 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47228 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47228 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00368 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99881 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47005 * 59.99795 * 13 11 9 15 15 H 1.48500 * 109.47149 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47152 * 300.00304 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.33997 * 124.92348 * 260.00011 * 17 2 1 19 19 C 1.46785 * 106.18653 * 179.97438 * 18 17 2 20 20 C 1.39401 * 134.37348 * 180.02562 * 19 18 17 21 21 C 1.36733 * 119.72130 * 179.97438 * 20 19 18 22 22 C 1.38747 * 120.41305 * 359.97438 * 21 20 19 23 23 C 1.37849 * 120.68696 * 0.03371 * 22 21 20 24 24 C 1.38942 * 119.81749 * 359.96991 * 23 22 21 25 25 O 1.34446 * 124.92269 * 79.69570 * 17 2 1 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 30 30 H 1.08996 * 109.47353 * 300.00507 * 7 5 4 31 31 H 1.09006 * 109.47337 * 60.00072 * 7 5 4 32 32 H 1.08996 * 109.47469 * 300.00560 * 8 7 5 33 33 H 1.09007 * 109.47111 * 60.00582 * 8 7 5 34 34 H 0.96998 * 119.99841 * 180.02562 * 12 11 9 35 35 H 1.08003 * 126.90692 * 359.96881 * 18 17 2 36 36 H 1.08002 * 120.13753 * 359.97438 * 20 19 18 37 37 H 1.08001 * 119.79460 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.65602 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.08943 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7285 -3.5873 8 6 2.7009 0.2543 -4.7588 9 6 3.2032 -0.4561 -5.9892 10 1 3.4602 -1.5040 -5.9408 11 6 3.3348 0.2317 -7.1769 12 7 3.0225 1.5078 -7.2359 13 14 3.9569 -0.6491 -8.7023 14 1 3.0402 -1.7688 -9.0358 15 1 4.0074 0.3053 -9.8390 16 1 5.3181 -1.1839 -8.4447 17 6 2.0323 -0.7104 1.2305 18 6 2.4679 -0.1032 2.3428 19 6 2.8534 -1.1743 3.2695 20 6 3.3703 -1.2044 4.5637 21 6 3.6268 -2.4061 5.1635 22 6 3.3752 -3.5940 4.4922 23 6 2.8643 -3.5840 3.2119 24 6 2.5967 -2.3736 2.5843 25 8 2.1030 -2.0454 1.3736 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.2491 -1.6318 -1.1525 30 1 3.6494 -1.1204 -3.3977 31 1 1.9779 -1.5509 -3.8325 32 1 1.7015 0.6458 -4.9483 33 1 3.3729 1.0770 -4.5140 34 1 3.1147 1.9916 -8.0716 35 1 2.5241 0.9605 2.5214 36 1 3.5675 -0.2824 5.0905 37 1 4.0269 -2.4309 6.1663 38 1 3.5818 -4.5363 4.9777 39 1 2.6725 -4.5144 2.6981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290938859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:48 Heat of formation + Delta-G solvation = -23.010277 kcal Electronic energy + Delta-G solvation = -21317.076206 eV Core-core repulsion = 17997.545402 eV Total energy + Delta-G solvation = -3319.530804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.74777 -39.35992 -38.16250 -35.54333 -33.45089 -33.04520 -31.49859 -30.69822 -30.39492 -28.72142 -25.82492 -24.27556 -23.07814 -22.18511 -21.50149 -20.79218 -19.68447 -17.64807 -17.42830 -16.90763 -16.42743 -16.01478 -15.66210 -15.07323 -14.89838 -14.43029 -14.33868 -13.98752 -13.66733 -13.38174 -13.17718 -13.03624 -12.56191 -12.30622 -12.25194 -12.08438 -11.97702 -11.53487 -11.23969 -11.16152 -10.90579 -10.61736 -10.38388 -9.95434 -9.68140 -9.22527 -9.06505 -8.97193 -8.89509 -8.41337 -8.31367 -5.95644 -4.00027 0.60953 1.07572 2.05307 2.37354 3.18813 3.35083 3.38079 3.40156 3.42524 3.45456 4.06026 4.37592 4.48054 4.64220 4.80024 4.83315 4.96647 5.02278 5.07959 5.18504 5.39126 5.39267 5.45900 5.56334 5.62209 5.82232 5.89469 5.95978 6.09900 6.13458 6.14822 6.22216 6.24298 6.34694 6.58426 6.88264 6.94154 7.74159 7.80221 7.86097 8.07196 8.38577 8.70068 9.08095 9.63441 11.15276 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029689 B = 0.002748 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.872474 B =10186.951234 C =10708.828496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.221 3.779 3 H 0.118 0.882 4 N -0.741 5.741 5 C 0.514 3.486 6 O -0.532 6.532 7 C -0.130 4.130 8 C 0.038 3.962 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.037 3.963 18 C -0.199 4.199 19 C -0.128 4.128 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.097 4.097 23 C -0.106 4.106 24 C 0.053 3.947 25 O -0.188 6.188 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.403 0.597 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 -8.880 25.821 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.115 3.885 3 H 0.136 0.864 4 N -0.396 5.396 5 C 0.303 3.697 6 O -0.407 6.407 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.011 4.011 18 C -0.218 4.218 19 C -0.129 4.129 20 C -0.090 4.090 21 C -0.156 4.156 22 C -0.115 4.115 23 C -0.124 4.124 24 C 0.005 3.995 25 O -0.090 6.090 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.237 0.763 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.838 -8.034 25.425 26.728 hybrid contribution 0.496 -0.818 -0.660 1.162 sum -1.342 -8.852 24.766 26.334 Atomic orbital electron populations 1.22234 0.93449 1.02985 1.03450 1.19541 0.94659 0.95801 0.78455 0.86421 1.46312 1.69656 1.14384 1.09216 1.21623 0.76166 0.87602 0.84305 1.90670 1.48971 1.16277 1.84741 1.21885 1.01030 1.01115 0.92932 1.18900 0.98398 0.93304 0.89401 1.21186 1.44500 0.96327 0.94611 0.92649 1.25022 0.95545 0.94848 0.98950 1.69984 1.48096 1.08125 1.26650 0.86649 0.79365 0.79364 0.82528 1.20242 1.21282 1.20255 1.22562 1.00609 0.80180 0.97731 1.22243 1.06875 0.99698 0.92999 1.19948 1.04177 0.92660 0.96089 1.20300 0.97480 0.98625 0.92547 1.20782 1.02174 0.92058 1.00545 1.20932 0.98423 0.98773 0.93347 1.19977 1.02888 0.94428 0.95102 1.19653 0.99913 0.95664 0.84229 1.83927 1.68833 1.23688 1.32512 0.90339 0.91943 0.91345 0.76302 0.90125 0.90077 0.95770 0.95783 0.92888 0.82150 0.85499 0.85379 0.84803 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.47 37.16 0.35 -1.54 16 2 C 0.22 2.82 3.01 -69.08 -0.21 2.62 16 3 H 0.12 1.59 7.55 -51.93 -0.39 1.19 16 4 N -0.74 -10.73 5.07 -54.93 -0.28 -11.01 16 5 C 0.51 9.75 7.79 -10.99 -0.09 9.67 16 6 O -0.53 -12.09 15.64 5.56 0.09 -12.00 16 7 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 8 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 9 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.04 0.45 6.05 -35.80 -0.22 0.23 16 18 C -0.20 -2.20 10.99 -37.62 -0.41 -2.62 16 19 C -0.13 -1.43 6.40 -105.16 -0.67 -2.11 16 20 C -0.07 -0.64 10.05 -39.69 -0.40 -1.04 16 21 C -0.14 -1.04 9.98 -39.94 -0.40 -1.43 16 22 C -0.10 -0.72 10.01 -39.54 -0.40 -1.12 16 23 C -0.11 -0.97 10.07 -39.46 -0.40 -1.37 16 24 C 0.05 0.62 7.42 -38.47 -0.29 0.33 16 25 O -0.19 -2.35 10.19 3.93 0.04 -2.31 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.40 5.06 8.28 -40.82 -0.34 4.72 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -34.14 339.84 -8.46 -42.60 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.34 Total: 1.63 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -3.81 Total: -14.02 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.46 Total: -37.74 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.13 Total: -14.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.14 -8.46 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290938859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.590 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds