Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21275 * 120.00678 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99690 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47228 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47228 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00368 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99881 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47005 * 59.99795 * 13 11 9 15 15 H 1.48500 * 109.47149 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47152 * 300.00304 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.33997 * 124.92348 * 260.00011 * 17 2 1 19 19 C 1.46785 * 106.18653 * 179.97438 * 18 17 2 20 20 C 1.39401 * 134.37348 * 180.02562 * 19 18 17 21 21 C 1.36733 * 119.72130 * 179.97438 * 20 19 18 22 22 C 1.38747 * 120.41305 * 359.97438 * 21 20 19 23 23 C 1.37849 * 120.68696 * 0.03371 * 22 21 20 24 24 C 1.38942 * 119.81749 * 359.96991 * 23 22 21 25 25 O 1.34446 * 124.92269 * 79.69570 * 17 2 1 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 30 30 H 1.08996 * 109.47353 * 300.00507 * 7 5 4 31 31 H 1.09006 * 109.47337 * 60.00072 * 7 5 4 32 32 H 1.08996 * 109.47469 * 300.00560 * 8 7 5 33 33 H 1.09007 * 109.47111 * 60.00582 * 8 7 5 34 34 H 0.96998 * 119.99841 * 180.02562 * 12 11 9 35 35 H 1.08003 * 126.90692 * 359.96881 * 18 17 2 36 36 H 1.08002 * 120.13753 * 359.97438 * 20 19 18 37 37 H 1.08001 * 119.79460 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.65602 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.08943 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7285 -3.5873 8 6 2.7009 0.2543 -4.7588 9 6 3.2032 -0.4561 -5.9892 10 1 3.4602 -1.5040 -5.9408 11 6 3.3348 0.2317 -7.1769 12 7 3.0225 1.5078 -7.2359 13 14 3.9569 -0.6491 -8.7023 14 1 3.0402 -1.7688 -9.0358 15 1 4.0074 0.3053 -9.8390 16 1 5.3181 -1.1839 -8.4447 17 6 2.0323 -0.7104 1.2305 18 6 2.4679 -0.1032 2.3428 19 6 2.8534 -1.1743 3.2695 20 6 3.3703 -1.2044 4.5637 21 6 3.6268 -2.4061 5.1635 22 6 3.3752 -3.5940 4.4922 23 6 2.8643 -3.5840 3.2119 24 6 2.5967 -2.3736 2.5843 25 8 2.1030 -2.0454 1.3736 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.2491 -1.6318 -1.1525 30 1 3.6494 -1.1204 -3.3977 31 1 1.9779 -1.5509 -3.8325 32 1 1.7015 0.6458 -4.9483 33 1 3.3729 1.0770 -4.5140 34 1 3.1147 1.9916 -8.0716 35 1 2.5241 0.9605 2.5214 36 1 3.5675 -0.2824 5.0905 37 1 4.0269 -2.4309 6.1663 38 1 3.5818 -4.5363 4.9777 39 1 2.6725 -4.5144 2.6981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290938859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = -44.320701 kcal Electronic energy + Delta-G solvation = -21318.000295 eV Core-core repulsion = 17997.545402 eV Total energy + Delta-G solvation = -3320.454893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.55275 -40.82689 -38.87658 -36.79410 -35.54320 -33.95242 -33.15867 -31.82845 -31.36345 -29.55652 -27.74832 -25.35729 -23.92587 -23.57747 -22.53101 -21.81100 -21.19659 -18.92628 -18.37276 -18.27867 -17.56423 -17.27730 -16.75823 -16.51054 -16.36907 -16.00153 -15.11862 -14.90394 -14.89091 -14.59012 -14.25397 -14.16726 -14.05889 -13.62561 -13.26741 -13.22634 -13.08590 -12.80243 -12.77262 -12.55670 -12.50101 -11.91638 -11.88527 -11.64978 -11.32534 -11.16858 -10.79415 -10.56200 -10.27270 -9.61099 -9.17701 -8.17817 -6.31713 -0.10959 0.38689 1.22742 1.42048 1.46426 1.52410 1.54176 1.68510 2.14906 2.44098 2.76829 3.15039 3.20485 3.68322 3.88933 3.96125 4.06918 4.11482 4.12732 4.24051 4.38622 4.49002 4.51821 4.54187 4.62256 4.68204 4.79227 4.90637 5.06514 5.09599 5.21170 5.29751 5.32959 5.44083 5.50139 5.51600 5.63585 5.74041 5.85471 6.15162 6.17930 6.47416 6.86096 7.23860 7.38291 8.94564 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.029689 B = 0.002748 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.872474 B =10186.951234 C =10708.828496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.222 3.778 3 H 0.109 0.891 4 N -0.720 5.720 5 C 0.519 3.481 6 O -0.578 6.578 7 C -0.120 4.120 8 C 0.043 3.957 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.006 4.006 12 N -0.937 5.937 13 Si 0.973 3.027 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.020 3.980 18 C -0.194 4.194 19 C -0.153 4.153 20 C -0.081 4.081 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.121 4.121 24 C 0.026 3.974 25 O -0.201 6.201 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.415 0.585 30 H 0.102 0.898 31 H 0.105 0.895 32 H -0.015 1.015 33 H -0.016 1.016 34 H 0.263 0.737 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -11.522 27.635 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.118 3.882 3 H 0.127 0.873 4 N -0.374 5.374 5 C 0.308 3.692 6 O -0.456 6.456 7 C -0.160 4.160 8 C 0.005 3.995 9 C -0.583 4.583 10 H 0.092 0.908 11 C -0.204 4.204 12 N -0.576 5.576 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.028 4.028 18 C -0.214 4.214 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.139 4.139 24 C -0.020 4.020 25 O -0.103 6.103 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.251 0.749 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.004 0.996 33 H 0.003 0.997 34 H 0.072 0.928 35 H 0.194 0.806 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.926 -10.731 27.289 29.338 hybrid contribution 0.236 -0.037 -1.033 1.061 sum -0.690 -10.769 26.256 28.387 Atomic orbital electron populations 1.22170 0.92464 1.03371 1.03447 1.19553 0.95404 0.95330 0.77951 0.87346 1.46033 1.68064 1.14763 1.08543 1.21287 0.75899 0.86868 0.85171 1.90658 1.51290 1.18157 1.85541 1.21654 1.03096 0.99923 0.91315 1.18683 0.95007 0.93626 0.92137 1.21684 1.44118 0.97281 0.95208 0.90762 1.26122 0.95619 0.95582 1.03047 1.70163 1.49537 1.10221 1.27724 0.85388 0.79335 0.78138 0.77468 1.18718 1.21257 1.18792 1.22269 1.02469 0.80432 0.97614 1.22546 1.05474 1.00637 0.92726 1.20223 1.05521 0.92422 0.97242 1.20646 0.97116 1.00248 0.91863 1.21227 1.00882 0.91441 1.01728 1.21409 0.96373 1.00315 0.92490 1.20353 1.03287 0.94249 0.95991 1.20138 1.00867 0.96890 0.84153 1.83867 1.69475 1.23655 1.33339 0.92417 0.91308 0.89219 0.74867 0.87973 0.87731 0.99620 0.99736 0.92824 0.80608 0.83736 0.82302 0.81549 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.47 71.98 0.68 -2.95 16 2 C 0.22 5.74 3.01 44.25 0.13 5.87 16 3 H 0.11 3.03 7.55 -2.39 -0.02 3.01 16 4 N -0.72 -20.85 5.07 -446.09 -2.26 -23.11 16 5 C 0.52 20.15 7.79 87.66 0.68 20.83 16 6 O -0.58 -27.61 15.64 -3.01 -0.05 -27.66 16 7 C -0.12 -4.90 5.64 29.85 0.17 -4.73 16 8 C 0.04 2.41 4.26 29.85 0.13 2.54 16 9 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 10 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 11 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 12 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 13 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 C 0.02 0.47 6.05 24.72 0.15 0.62 16 18 C -0.19 -4.21 10.99 23.54 0.26 -3.95 16 19 C -0.15 -3.27 6.40 -20.21 -0.13 -3.40 16 20 C -0.08 -1.27 10.05 22.20 0.22 -1.05 16 21 C -0.14 -1.58 9.98 22.04 0.22 -1.36 16 22 C -0.09 -1.03 10.01 22.30 0.22 -0.81 16 23 C -0.12 -2.00 10.07 22.35 0.23 -1.77 16 24 C 0.03 0.59 7.42 22.99 0.17 0.76 16 25 O -0.20 -4.95 10.19 -8.86 -0.09 -5.04 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.41 10.08 8.28 -92.71 -0.77 9.31 16 30 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 32 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 33 H -0.02 -1.00 8.10 -2.38 -0.02 -1.01 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 38 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -77.22 339.84 4.03 -73.19 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.29 Total: 15.72 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.83 Total: -20.36 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.98 Total: -82.46 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.14 Total: -32.70 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -77.22 4.03 -73.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290938859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.869 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds