Wall clock time and date at job start Tue Mar 31 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36652 * 120.00098 * 2 1 4 4 H 1.07995 * 120.00361 * 200.33311 * 3 2 1 5 5 C 1.39213 * 119.99880 * 20.33923 * 3 2 1 6 6 N 1.31261 * 119.99904 * 17.20362 * 5 3 2 7 7 Si 1.86798 * 119.99936 * 197.20667 * 5 3 2 8 8 H 1.48495 * 109.47219 * 94.98060 * 7 5 3 9 9 H 1.48504 * 109.47064 * 214.98586 * 7 5 3 10 10 H 1.48507 * 109.46850 * 334.98015 * 7 5 3 11 11 C 1.34775 * 119.99865 * 180.02562 * 2 1 3 12 12 O 1.21585 * 119.99934 * 183.67049 * 11 2 1 13 13 C 1.47857 * 120.00054 * 3.93471 * 11 2 1 14 14 C 1.39720 * 119.96846 * 320.27369 * 13 11 2 15 15 C 1.37754 * 120.16733 * 179.11324 * 14 13 11 16 16 C 1.39860 * 119.68709 * 0.29793 * 15 14 13 17 17 C 1.39453 * 120.01127 * 0.92438 * 16 15 14 18 18 C 1.37490 * 120.40163 * 358.70057 * 17 16 15 19 19 C 1.51907 * 119.56502 * 177.42637 * 17 16 15 20 20 C 1.52430 * 109.27500 * 69.02964 * 19 17 16 21 21 C 1.52120 * 111.49935 * 272.49487 * 20 19 17 22 22 C 1.50799 * 114.14238 * 71.57429 * 21 20 19 23 23 C 1.47442 * 120.37854 * 181.94783 * 16 15 14 24 24 O 1.21238 * 121.23508 * 293.06322 * 23 16 15 25 25 H 1.08999 * 109.46984 * 264.89836 * 1 2 3 26 26 H 1.08995 * 109.47133 * 24.89733 * 1 2 3 27 27 H 1.09004 * 109.47309 * 144.89384 * 1 2 3 28 28 H 0.96996 * 119.99630 * 180.02562 * 6 5 3 29 29 H 1.08006 * 119.91520 * 359.39338 * 14 13 11 30 30 H 1.08002 * 120.16124 * 180.02562 * 15 14 13 31 31 H 1.07993 * 120.17656 * 180.46112 * 18 17 16 32 32 H 1.08998 * 109.50582 * 188.97155 * 19 17 16 33 33 H 1.09004 * 109.50683 * 309.05105 * 19 17 16 34 34 H 1.09006 * 109.07195 * 33.01113 * 20 19 17 35 35 H 1.08999 * 109.07680 * 151.97343 * 20 19 17 36 36 H 1.08992 * 108.55164 * 192.78172 * 21 20 19 37 37 H 1.09001 * 108.54665 * 310.37626 * 21 20 19 38 38 H 1.09003 * 109.36703 * 55.73518 * 22 21 20 39 39 H 1.09002 * 109.36568 * 175.47981 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1483 1.1834 0.0000 4 1 3.1778 1.2126 -0.3250 5 6 1.5173 2.3515 0.4191 6 7 0.4100 2.2838 1.1206 7 14 2.2465 4.0150 -0.0171 8 1 1.6016 4.5299 -1.2516 9 1 2.0110 4.9665 1.0985 10 1 3.7070 3.8709 -0.2447 11 6 2.1389 -1.1672 -0.0005 12 8 3.3528 -1.1683 0.0669 13 6 1.4022 -2.4461 -0.0890 14 6 0.2032 -2.6107 0.6093 15 6 -0.4958 -3.7939 0.5154 16 6 0.0034 -4.8323 -0.2775 17 6 1.2132 -4.6744 -0.9529 18 6 1.9090 -3.4917 -0.8668 19 6 1.7752 -5.8295 -1.7639 20 6 0.8936 -6.0626 -2.9853 21 6 -0.2558 -7.0082 -2.6709 22 6 -1.3242 -6.4092 -1.7911 23 6 -0.7534 -6.0893 -0.4231 24 8 -0.9131 -6.8393 0.5159 25 1 -0.3633 -0.0914 1.0236 26 1 -0.3633 0.9321 -0.4326 27 1 -0.3634 -0.8407 -0.5910 28 1 -0.0298 3.0976 1.4122 29 1 -0.1788 -1.8064 1.2207 30 1 -1.4228 -3.9209 1.0548 31 1 2.8418 -3.3707 -1.3973 32 1 2.7880 -5.5886 -2.0867 33 1 1.7934 -6.7301 -1.1502 34 1 0.4879 -5.1076 -3.3193 35 1 1.4984 -6.4906 -3.7847 36 1 -0.7142 -7.3208 -3.6090 37 1 0.1473 -7.8910 -2.1745 38 1 -1.6989 -5.4941 -2.2496 39 1 -2.1431 -7.1203 -1.6819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291558646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:11 Heat of formation + Delta-G solvation = -43.085228 kcal Electronic energy + Delta-G solvation = -22519.663798 eV Core-core repulsion = 19199.262478 eV Total energy + Delta-G solvation = -3320.401319 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49540 -38.98644 -37.50061 -35.93697 -34.82891 -32.35017 -31.78817 -30.83406 -29.45049 -26.63513 -25.42067 -24.89472 -23.65978 -22.12769 -20.79078 -19.86967 -18.96701 -17.16726 -16.85286 -16.38403 -15.97924 -15.15783 -15.08647 -14.66875 -14.32554 -14.12896 -14.05656 -13.75840 -13.61609 -13.42302 -13.18319 -12.83642 -12.42498 -12.17780 -11.86852 -11.62307 -11.52578 -11.35965 -11.24147 -11.07304 -10.91988 -10.87181 -10.51859 -10.39681 -10.36172 -9.67845 -9.11497 -8.71441 -8.56035 -8.31972 -7.83900 -6.49126 -3.94589 1.04030 1.60714 1.93744 3.08870 3.19350 3.24990 3.54970 3.94244 4.02654 4.20946 4.45049 4.59007 4.69791 4.81163 4.89130 4.98278 5.04969 5.15726 5.27635 5.39391 5.44834 5.57893 5.61380 5.67370 5.70519 5.76572 5.81842 5.88459 6.07696 6.11653 6.22850 6.28561 6.52422 6.58760 6.71426 6.79762 7.04386 7.12333 7.36033 7.43983 7.99579 8.36533 9.05984 9.27699 9.87247 10.55371 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.003956 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.519976 B = 7075.913579 C = 7444.946959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.426 5.426 3 C -0.307 4.307 4 H 0.104 0.896 5 C 0.033 3.967 6 N -0.869 5.869 7 Si 0.928 3.072 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.466 3.534 12 O -0.587 6.587 13 C -0.069 4.069 14 C -0.108 4.108 15 C -0.088 4.088 16 C -0.160 4.160 17 C -0.061 4.061 18 C -0.080 4.080 19 C -0.086 4.086 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.161 4.161 23 C 0.415 3.585 24 O -0.450 6.450 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -13.364 -7.836 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.142 5.142 3 C -0.435 4.435 4 H 0.121 0.879 5 C -0.172 4.172 6 N -0.507 5.507 7 Si 0.754 3.246 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.191 1.191 11 C 0.255 3.745 12 O -0.473 6.473 13 C -0.072 4.072 14 C -0.126 4.126 15 C -0.106 4.106 16 C -0.161 4.161 17 C -0.061 4.061 18 C -0.099 4.099 19 C -0.124 4.124 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.199 4.199 23 C 0.290 3.710 24 O -0.322 6.322 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.581 -13.574 -7.214 16.354 hybrid contribution 0.047 1.053 -0.009 1.054 sum -5.534 -12.521 -7.223 15.478 Atomic orbital electron populations 1.21845 0.81179 1.00752 1.00389 1.43476 1.05676 1.04754 1.60245 1.19756 0.98836 0.83176 1.41743 0.87858 1.25395 0.96539 1.00270 0.95017 1.69961 1.18919 1.29628 1.32228 0.85879 0.79764 0.80817 0.78149 1.20223 1.20793 1.19097 1.17964 0.87435 0.82996 0.86064 1.90618 1.13403 1.86584 1.56713 1.20519 0.94389 0.95794 0.96511 1.21711 0.94080 0.97710 0.99131 1.21007 1.00047 0.92352 0.97175 1.20183 0.97512 0.96555 1.01877 1.19796 0.93923 0.95226 0.97189 1.20997 0.99474 0.91315 0.98087 1.20856 0.99637 0.96045 0.95815 1.21316 0.96441 1.00462 0.97479 1.20840 0.95509 0.98908 0.99502 1.21890 0.99732 1.03693 0.94619 1.22831 0.75062 0.83682 0.89376 1.90534 1.50119 1.48555 1.43025 0.92671 0.90370 0.94602 0.91870 0.84055 0.85603 0.84926 0.90027 0.90914 0.90923 0.90935 0.90774 0.91789 0.88724 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.21 7.20 59.85 0.43 2.64 16 2 N -0.43 -10.83 3.01 -123.29 -0.37 -11.20 16 3 C -0.31 -8.42 9.28 -15.04 -0.14 -8.55 16 4 H 0.10 2.96 7.43 -52.49 -0.39 2.57 16 5 C 0.03 0.84 4.96 -17.43 -0.09 0.75 16 6 N -0.87 -22.38 10.85 55.51 0.60 -21.78 16 7 Si 0.93 20.05 29.59 -169.99 -5.03 15.02 16 8 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 C 0.47 11.64 7.30 -12.32 -0.09 11.55 16 12 O -0.59 -16.68 16.60 5.29 0.09 -16.59 16 13 C -0.07 -1.37 5.21 -104.82 -0.55 -1.92 16 14 C -0.11 -1.89 7.56 -39.21 -0.30 -2.18 16 15 C -0.09 -1.32 9.81 -39.15 -0.38 -1.71 16 16 C -0.16 -2.32 5.48 -105.09 -0.58 -2.90 16 17 C -0.06 -0.88 5.10 -103.85 -0.53 -1.41 16 18 C -0.08 -1.38 9.26 -39.26 -0.36 -1.74 16 19 C -0.09 -0.95 5.41 -27.58 -0.15 -1.10 16 20 C -0.12 -1.05 5.58 -27.47 -0.15 -1.20 16 21 C -0.11 -0.88 5.29 -28.28 -0.15 -1.03 16 22 C -0.16 -1.49 5.79 -28.52 -0.17 -1.66 16 23 C 0.42 5.44 5.52 -30.10 -0.17 5.27 16 24 O -0.45 -7.19 17.93 5.59 0.10 -7.09 16 25 H 0.05 1.20 6.59 -51.93 -0.34 0.86 16 26 H 0.08 1.79 6.57 -51.93 -0.34 1.45 16 27 H 0.04 0.67 5.96 -51.93 -0.31 0.36 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.14 2.49 5.37 -52.48 -0.28 2.21 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.26 7.97 -52.49 -0.42 1.85 16 32 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 33 H 0.07 0.80 7.58 -51.93 -0.39 0.41 16 34 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 38 H 0.09 0.79 8.13 -51.93 -0.42 0.36 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -31.63 318.11 -8.13 -39.77 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.95 Total: 2.27 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.36 Total: -5.19 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.23 Total: -32.98 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.19 Total: -23.68 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.63 -8.13 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291558646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.317 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds