Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21515 * 120.00024 * 0.02562 * 13 12 2 15 15 C 1.48070 * 119.99793 * 180.02562 * 13 12 2 16 16 C 1.39593 * 119.91480 * 359.72432 * 15 13 12 17 17 C 1.37761 * 119.80156 * 179.87341 * 16 15 13 18 18 C 1.39784 * 119.97734 * 0.52779 * 17 16 15 19 19 C 1.39572 * 120.38690 * 359.57375 * 18 17 16 20 20 C 1.38209 * 119.39812 * 0.19579 * 19 18 17 21 21 C 1.50448 * 121.60720 * 180.38446 * 19 18 17 22 22 C 1.52614 * 111.28327 * 337.28888 * 21 19 18 23 23 C 1.53438 * 109.36559 * 54.71289 * 22 21 19 24 24 C 1.47867 * 119.56662 * 179.42033 * 18 17 16 25 25 O 1.21218 * 121.17844 * 348.75546 * 24 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.07991 * 120.09842 * 0.09501 * 16 15 13 32 32 H 1.08001 * 120.01291 * 180.30271 * 17 16 15 33 33 H 1.08002 * 119.86895 * 179.90358 * 20 19 18 34 34 H 1.08998 * 109.11577 * 97.75293 * 21 19 18 35 35 H 1.09008 * 109.11672 * 216.88574 * 21 19 18 36 36 H 1.09005 * 109.48874 * 174.68276 * 22 21 19 37 37 H 1.08999 * 109.48905 * 294.72469 * 22 21 19 38 38 H 1.09004 * 109.87637 * 55.43033 * 23 22 21 39 39 H 1.09000 * 109.87544 * 176.49264 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8584 1.1611 -2.4115 15 6 2.6400 -0.7161 -3.5663 16 6 2.9765 -2.0693 -3.5004 17 6 3.4325 -2.7171 -4.6274 18 6 3.5674 -2.0163 -5.8294 19 6 3.2340 -0.6628 -5.8987 20 6 2.7725 -0.0188 -4.7662 21 6 3.3604 0.1158 -7.1798 22 6 4.3584 -0.5397 -8.1303 23 6 3.9563 -2.0024 -8.3607 24 6 4.0699 -2.7175 -7.0303 25 8 4.5559 -3.8253 -6.9529 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 2.8763 -2.6075 -2.5696 32 1 3.6892 -3.7651 -4.5815 33 1 2.5138 1.0288 -4.8108 34 1 2.3855 0.1658 -7.6648 35 1 3.6976 1.1269 -6.9513 36 1 4.3575 -0.0080 -9.0819 37 1 5.3562 -0.5011 -7.6931 38 1 2.9289 -2.0519 -8.7216 39 1 4.6275 -2.4613 -9.0867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292936412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -65.304143 kcal Electronic energy + Delta-G solvation = -21800.609259 eV Core-core repulsion = 18479.244455 eV Total energy + Delta-G solvation = -3321.364804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70578 -39.24722 -37.82806 -35.71342 -34.90605 -32.54409 -31.51250 -30.93596 -28.72591 -28.24816 -25.31334 -24.35169 -23.37638 -21.67454 -21.34687 -19.98493 -18.96357 -17.79712 -16.78572 -16.40297 -15.79946 -15.46304 -15.15563 -14.80217 -14.66586 -14.34736 -14.25425 -13.83517 -13.60082 -13.44741 -13.28767 -12.85221 -12.47874 -12.15852 -12.11098 -11.72618 -11.44094 -11.38293 -11.14342 -11.06705 -10.97970 -10.79177 -10.37155 -10.27498 -9.84977 -9.25670 -9.10959 -9.04028 -8.88734 -8.60173 -8.00224 -6.16337 -4.26008 0.31907 1.22042 2.03868 3.21349 3.22704 3.29472 3.31646 3.74312 3.88931 4.00567 4.30475 4.32651 4.42530 4.58061 4.70881 4.87105 5.04895 5.08361 5.14045 5.16499 5.23497 5.28516 5.42633 5.52669 5.61833 5.75412 5.78221 5.88022 6.14851 6.21115 6.31429 6.68842 6.78100 6.91061 7.08972 7.25569 7.35501 7.49203 7.64091 7.85535 8.09454 8.55184 8.71075 8.98559 9.41403 10.89701 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.003335 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.152347 B = 8394.615262 C = 9026.905131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.698 5.698 13 C 0.537 3.463 14 O -0.546 6.546 15 C -0.083 4.083 16 C -0.107 4.107 17 C -0.067 4.067 18 C -0.161 4.161 19 C -0.041 4.041 20 C -0.082 4.082 21 C -0.088 4.088 22 C -0.114 4.114 23 C -0.164 4.164 24 C 0.401 3.599 25 O -0.455 6.455 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -4.338 -19.850 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.346 5.346 13 C 0.322 3.678 14 O -0.426 6.426 15 C -0.086 4.086 16 C -0.125 4.125 17 C -0.085 4.085 18 C -0.162 4.162 19 C -0.041 4.041 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.151 4.151 23 C -0.202 4.202 24 C 0.279 3.721 25 O -0.330 6.330 26 H 0.046 0.954 27 H 0.110 0.890 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.377 -3.939 -19.636 20.500 hybrid contribution 0.296 -0.894 1.053 1.413 sum 4.674 -4.834 -18.582 19.761 Atomic orbital electron populations 1.22087 0.98237 0.99250 1.01040 1.18818 0.91167 0.94074 0.79729 0.93115 1.21203 1.32654 1.13330 0.90268 0.92011 1.24887 0.94757 0.94917 0.99084 1.69900 1.35781 1.22350 1.23977 0.86429 0.79202 0.79277 0.82098 1.20497 1.19805 1.21022 1.46540 1.64015 1.13639 1.10367 1.18278 0.79266 0.86868 0.83412 1.90725 1.51358 1.15508 1.85008 1.20555 0.98796 0.94121 0.95133 1.21397 0.98416 0.93760 0.98964 1.21300 0.95799 1.00352 0.91088 1.20362 1.05607 0.94582 0.95654 1.19987 0.96114 0.92627 0.95416 1.21228 0.97320 1.00937 0.90583 1.20512 1.00664 0.99101 0.92193 1.21506 0.99618 0.93762 1.00219 1.22324 1.04616 0.97033 0.96229 1.22839 0.73556 0.85338 0.90396 1.90521 1.34441 1.19522 1.88503 0.95371 0.88981 0.96567 0.92499 0.77716 0.84620 0.84567 0.84011 0.89475 0.89492 0.90001 0.91066 0.87883 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.66 2.56 -69.09 -0.18 6.48 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.70 -14.51 5.02 -55.81 -0.28 -14.79 16 13 C 0.54 10.83 7.74 -12.23 -0.09 10.73 16 14 O -0.55 -12.92 15.98 5.35 0.09 -12.84 16 15 C -0.08 -1.30 5.87 -104.92 -0.62 -1.92 16 16 C -0.11 -1.43 9.53 -39.25 -0.37 -1.81 16 17 C -0.07 -0.83 9.59 -39.18 -0.38 -1.21 16 18 C -0.16 -1.90 5.82 -104.88 -0.61 -2.51 16 19 C -0.04 -0.45 5.78 -104.26 -0.60 -1.06 16 20 C -0.08 -1.12 9.19 -39.16 -0.36 -1.48 16 21 C -0.09 -0.66 5.69 -28.20 -0.16 -0.82 16 22 C -0.11 -0.70 5.90 -26.70 -0.16 -0.86 16 23 C -0.16 -1.17 6.18 -27.28 -0.17 -1.34 16 24 C 0.40 4.41 6.90 -29.99 -0.21 4.20 16 25 O -0.45 -6.33 17.25 5.61 0.10 -6.23 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 6.96 6.56 -40.82 -0.27 6.69 16 31 H 0.14 1.63 6.39 -52.49 -0.34 1.29 16 32 H 0.14 1.55 7.70 -52.49 -0.40 1.14 16 33 H 0.14 1.93 7.62 -52.49 -0.40 1.53 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.59 8.10 -51.92 -0.42 0.17 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -31.67 327.53 -8.55 -40.22 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.04 Total: 4.84 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.96 Total: -7.58 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.35 Total: -38.81 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.06 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.67 -8.55 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292936412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.083 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds