Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21515 * 120.00024 * 0.02562 * 13 12 2 15 15 C 1.48070 * 119.99793 * 180.02562 * 13 12 2 16 16 C 1.39593 * 119.91480 * 359.72432 * 15 13 12 17 17 C 1.37761 * 119.80156 * 179.87341 * 16 15 13 18 18 C 1.39784 * 119.97734 * 0.52779 * 17 16 15 19 19 C 1.39572 * 120.38690 * 359.57375 * 18 17 16 20 20 C 1.38209 * 119.39812 * 0.19579 * 19 18 17 21 21 C 1.50448 * 121.60720 * 180.38446 * 19 18 17 22 22 C 1.52614 * 111.28327 * 337.28888 * 21 19 18 23 23 C 1.53438 * 109.36559 * 54.71289 * 22 21 19 24 24 C 1.47867 * 119.56662 * 179.42033 * 18 17 16 25 25 O 1.21218 * 121.17844 * 348.75546 * 24 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.07991 * 120.09842 * 0.09501 * 16 15 13 32 32 H 1.08001 * 120.01291 * 180.30271 * 17 16 15 33 33 H 1.08002 * 119.86895 * 179.90358 * 20 19 18 34 34 H 1.08998 * 109.11577 * 97.75293 * 21 19 18 35 35 H 1.09008 * 109.11672 * 216.88574 * 21 19 18 36 36 H 1.09005 * 109.48874 * 174.68276 * 22 21 19 37 37 H 1.08999 * 109.48905 * 294.72469 * 22 21 19 38 38 H 1.09004 * 109.87637 * 55.43033 * 23 22 21 39 39 H 1.09000 * 109.87544 * 176.49264 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8584 1.1611 -2.4115 15 6 2.6400 -0.7161 -3.5663 16 6 2.9765 -2.0693 -3.5004 17 6 3.4325 -2.7171 -4.6274 18 6 3.5674 -2.0163 -5.8294 19 6 3.2340 -0.6628 -5.8987 20 6 2.7725 -0.0188 -4.7662 21 6 3.3604 0.1158 -7.1798 22 6 4.3584 -0.5397 -8.1303 23 6 3.9563 -2.0024 -8.3607 24 6 4.0699 -2.7175 -7.0303 25 8 4.5559 -3.8253 -6.9529 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 2.8763 -2.6075 -2.5696 32 1 3.6892 -3.7651 -4.5815 33 1 2.5138 1.0288 -4.8108 34 1 2.3855 0.1658 -7.6648 35 1 3.6976 1.1269 -6.9513 36 1 4.3575 -0.0080 -9.0819 37 1 5.3562 -0.5011 -7.6931 38 1 2.9289 -2.0519 -8.7216 39 1 4.6275 -2.4613 -9.0867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292936412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -84.531845 kcal Electronic energy + Delta-G solvation = -21801.443035 eV Core-core repulsion = 18479.244455 eV Total energy + Delta-G solvation = -3322.198579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71090 -40.64513 -38.98450 -36.80758 -36.49961 -34.41830 -32.53816 -32.11255 -30.43733 -29.01656 -27.37804 -25.58311 -24.16997 -22.96720 -22.55949 -21.53288 -20.13259 -19.19482 -17.99993 -17.61456 -17.35368 -16.75626 -16.46465 -15.97872 -15.93804 -15.66061 -15.37716 -14.98579 -14.68198 -14.53930 -14.40411 -14.19188 -13.87929 -13.70612 -13.12212 -13.01426 -12.95816 -12.83760 -12.74362 -12.31953 -12.16373 -12.12729 -11.98531 -11.81477 -11.14675 -11.00027 -10.64261 -10.61360 -10.20614 -9.87462 -9.76765 -8.20312 -6.38160 -0.73738 0.22328 1.04046 1.44292 1.44922 1.55553 1.96075 2.27462 2.49294 2.75283 2.95645 3.10394 3.53464 3.68046 3.72170 3.89789 4.05138 4.11803 4.12409 4.26634 4.50749 4.58671 4.70740 4.77535 4.82347 4.87983 4.89127 5.04414 5.06250 5.11101 5.15866 5.25145 5.30009 5.32077 5.39512 5.53726 5.63054 5.71052 5.85290 6.05283 6.41146 6.67899 6.82866 7.25706 7.41189 8.86199 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.003335 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.152347 B = 8394.615262 C = 9026.905131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.003 0.997 4 C -0.551 4.551 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.265 1.265 11 H -0.286 1.286 12 N -0.696 5.696 13 C 0.536 3.464 14 O -0.590 6.590 15 C -0.105 4.105 16 C -0.105 4.105 17 C -0.071 4.071 18 C -0.164 4.164 19 C -0.026 4.026 20 C -0.088 4.088 21 C -0.090 4.090 22 C -0.108 4.108 23 C -0.158 4.158 24 C 0.401 3.599 25 O -0.488 6.488 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.267 0.733 30 H 0.404 0.596 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -5.717 -21.917 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.589 4.589 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.189 1.189 11 H -0.211 1.211 12 N -0.344 5.344 13 C 0.324 3.676 14 O -0.472 6.472 15 C -0.108 4.108 16 C -0.124 4.124 17 C -0.089 4.089 18 C -0.165 4.165 19 C -0.027 4.027 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.195 4.195 24 C 0.281 3.719 25 O -0.365 6.365 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.241 0.759 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.261 -5.347 -21.730 22.988 hybrid contribution 0.041 -0.446 1.589 1.651 sum 5.302 -5.792 -20.141 21.618 Atomic orbital electron populations 1.21911 0.98016 0.99610 0.99791 1.18426 0.91324 0.92061 0.81527 0.97958 1.21529 1.32872 1.13698 0.90758 0.90858 1.25796 0.94797 0.95540 1.02294 1.70046 1.36845 1.23790 1.24733 0.85324 0.78973 0.78054 0.77867 1.19554 1.18886 1.21125 1.46275 1.64285 1.14277 1.09613 1.18922 0.78009 0.86445 0.84250 1.90687 1.53203 1.17527 1.85818 1.20213 1.01688 0.95077 0.93808 1.21434 0.98231 0.92778 0.99925 1.21472 0.95470 1.00925 0.91057 1.20733 1.04671 0.95027 0.96099 1.20314 0.93891 0.92406 0.96078 1.21322 0.97705 1.00887 0.90830 1.20684 1.02394 0.99014 0.90579 1.21534 0.98601 0.93150 1.01257 1.22391 1.06330 0.96990 0.93763 1.23374 0.72143 0.84784 0.91565 1.90518 1.35963 1.21006 1.89032 0.94014 0.91177 0.96780 0.92422 0.75942 0.83664 0.83553 0.84419 0.87322 0.88536 0.86814 0.91748 0.85697 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.13 2.56 44.24 0.11 14.24 16 3 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 4 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -52.40 11.32 21.45 0.24 -52.15 16 8 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.70 -29.72 5.02 -448.78 -2.25 -31.97 16 13 C 0.54 22.40 7.74 86.85 0.67 23.07 16 14 O -0.59 -29.32 15.98 -3.76 -0.06 -29.38 16 15 C -0.10 -3.32 5.87 -20.06 -0.12 -3.44 16 16 C -0.11 -2.77 9.53 22.48 0.21 -2.56 16 17 C -0.07 -1.68 9.59 22.53 0.22 -1.47 16 18 C -0.16 -3.57 5.82 -20.03 -0.12 -3.69 16 19 C -0.03 -0.53 5.78 -19.63 -0.11 -0.65 16 20 C -0.09 -2.38 9.19 22.54 0.21 -2.17 16 21 C -0.09 -1.03 5.69 29.64 0.17 -0.86 16 22 C -0.11 -0.89 5.90 30.61 0.18 -0.71 16 23 C -0.16 -1.63 6.18 30.24 0.19 -1.44 16 24 C 0.40 7.86 6.90 28.48 0.20 8.06 16 25 O -0.49 -12.77 17.25 -2.84 -0.05 -12.82 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 28 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.40 14.55 6.56 -92.70 -0.61 13.94 16 31 H 0.15 3.41 6.39 -2.92 -0.02 3.39 16 32 H 0.15 3.14 7.70 -2.91 -0.02 3.12 16 33 H 0.14 3.77 7.62 -2.91 -0.02 3.75 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.00 8.10 -2.38 -0.02 0.98 16 36 H 0.11 0.32 8.14 -2.38 -0.02 0.31 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.21 327.53 3.52 -67.69 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.47 Total: 20.21 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 3.15 Total: -5.50 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.01 Total: -84.13 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.11 Total: -42.20 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.21 3.52 -67.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292936412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.844 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds