Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47444 * 116.02065 * 3 2 1 5 5 O 1.42899 * 109.47424 * 179.97438 * 4 3 2 6 6 C 1.35720 * 116.99700 * 180.02562 * 5 4 3 7 7 C 1.39011 * 119.90657 * 0.24997 * 6 5 4 8 8 C 1.37690 * 120.09012 * 180.21192 * 7 6 5 9 9 C 1.39798 * 119.90421 * 359.51458 * 8 7 6 10 10 C 1.47500 * 120.09014 * 180.27613 * 9 8 7 11 11 O 1.21620 * 119.99986 * 323.89382 * 10 9 8 12 12 N 1.34775 * 119.99700 * 143.89014 * 10 9 8 13 13 C 1.36901 * 120.00160 * 186.66565 * 12 10 9 14 14 H 1.08004 * 119.99508 * 345.57035 * 13 12 10 15 15 C 1.39020 * 120.00410 * 165.56817 * 13 12 10 16 16 N 1.31389 * 119.99918 * 35.82664 * 15 13 12 17 17 Si 1.86796 * 120.00112 * 215.82529 * 15 13 12 18 18 H 1.48500 * 109.47000 * 90.00258 * 17 15 13 19 19 H 1.48499 * 109.47337 * 209.99825 * 17 15 13 20 20 H 1.48492 * 109.47402 * 330.00021 * 17 15 13 21 21 C 1.46508 * 120.00134 * 6.67211 * 12 10 9 22 22 C 1.53008 * 109.46901 * 99.92262 * 21 12 10 23 23 C 1.39793 * 119.81524 * 0.25143 * 9 8 7 24 24 C 1.37693 * 119.90505 * 0.02562 * 23 9 8 25 25 H 4.44653 * 5.63322 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47658 * 356.02043 * 3 2 1 27 27 H 1.09002 * 109.47369 * 236.01774 * 3 2 1 28 28 H 1.08999 * 109.46711 * 59.99398 * 4 3 2 29 29 H 1.09002 * 109.46600 * 300.00179 * 4 3 2 30 30 H 1.07995 * 119.95313 * 359.97438 * 7 6 5 31 31 H 1.07992 * 120.04504 * 179.79599 * 8 7 6 32 32 H 0.96995 * 119.99655 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.46765 * 219.91854 * 21 12 10 34 34 H 1.08996 * 109.46852 * 339.92623 * 21 12 10 35 35 H 1.08996 * 109.46785 * 74.92685 * 22 21 12 36 36 H 1.09000 * 109.46584 * 194.92232 * 22 21 12 37 37 H 1.08998 * 109.47057 * 314.91994 * 22 21 12 38 38 H 1.08004 * 120.05186 * 180.02562 * 23 9 8 39 39 H 1.08004 * 119.94967 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.6337 -1.2963 5 8 4.5848 0.6349 -1.2960 6 6 5.2006 1.1662 -2.3824 7 6 4.4413 1.6815 -3.4267 8 6 5.0622 2.2175 -4.5326 9 6 6.4581 2.2522 -4.5999 10 6 7.1274 2.8310 -5.7800 11 8 6.6458 2.6813 -6.8866 12 7 8.2727 3.5258 -5.6318 13 6 8.8214 4.1778 -6.7033 14 1 8.4812 3.9538 -7.7036 15 6 9.8163 5.1280 -6.5039 16 7 10.7048 4.9589 -5.5508 17 14 9.8900 6.6454 -7.5909 18 1 9.0782 7.7299 -6.9827 19 1 11.2996 7.0946 -7.7188 20 1 9.3510 6.3179 -8.9352 21 6 8.9307 3.5834 -4.3240 22 6 10.0872 2.5821 -4.2905 23 6 7.2178 1.7374 -3.5454 24 6 6.5889 1.1980 -2.4456 25 1 -1.0501 0.0001 0.0003 26 1 3.0098 -1.0243 0.0713 27 1 3.0091 0.5752 0.8521 28 1 2.7919 1.6587 -1.3676 29 1 2.7926 0.0591 -2.1484 30 1 3.3630 1.6579 -3.3720 31 1 4.4716 2.6146 -5.3448 32 1 11.3987 5.6221 -5.4115 33 1 9.3157 4.5890 -4.1550 34 1 8.2113 3.3338 -3.5441 35 1 10.9215 2.9712 -4.8740 36 1 10.4052 2.4289 -3.2593 37 1 9.7586 1.6332 -4.7142 38 1 8.2965 1.7626 -3.5931 39 1 7.1751 0.7996 -1.6307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294473493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = 39.443699 kcal Electronic energy + Delta-G solvation = -21867.778024 eV Core-core repulsion = 18550.955428 eV Total energy + Delta-G solvation = -3316.822596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15427 -38.87793 -36.74697 -35.18879 -34.76590 -32.19024 -31.05454 -30.53734 -29.52537 -29.16487 -25.25525 -24.57775 -22.66452 -22.17830 -21.60452 -19.42089 -18.71665 -17.77116 -16.93404 -16.45977 -16.35724 -15.66009 -15.02437 -14.56879 -14.27000 -14.07529 -14.01884 -13.83706 -13.47993 -13.40135 -12.88932 -12.68797 -12.25749 -12.11742 -11.88219 -11.48488 -11.32978 -11.10105 -10.89949 -10.84510 -10.63318 -10.43096 -10.40212 -10.37533 -10.23300 -9.86951 -8.72393 -8.60328 -8.44182 -7.91744 -7.81814 -6.55662 -3.75144 1.50341 1.68167 2.31307 2.48509 3.13583 3.18855 3.25336 3.30395 3.71426 4.06978 4.17507 4.36476 4.69084 4.69832 4.79857 4.98145 5.00937 5.12081 5.18420 5.43298 5.49713 5.57883 5.63838 5.69306 5.76836 5.93211 6.16786 6.33149 6.46652 6.52701 6.55832 6.60526 6.73889 6.93619 6.98189 7.23914 7.24511 7.41681 7.52401 7.71106 8.09292 8.46234 9.13361 9.37717 9.98794 10.45286 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.003245 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.846244 B = 8626.381454 C = 9022.743804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.188 4.188 3 C -0.010 4.010 4 C 0.065 3.935 5 O -0.316 6.316 6 C 0.124 3.876 7 C -0.216 4.216 8 C -0.042 4.042 9 C -0.125 4.125 10 C 0.470 3.530 11 O -0.595 6.595 12 N -0.426 5.426 13 C -0.317 4.317 14 H 0.108 0.892 15 C 0.045 3.955 16 N -0.841 5.841 17 Si 0.906 3.094 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.091 3.909 22 C -0.158 4.158 23 C -0.078 4.078 24 C -0.158 4.158 25 H 0.220 0.780 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.270 0.730 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.156 0.844 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 -6.384 12.547 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C -0.046 4.046 4 C -0.011 4.011 5 O -0.231 6.231 6 C 0.079 3.921 7 C -0.234 4.234 8 C -0.061 4.061 9 C -0.129 4.129 10 C 0.260 3.740 11 O -0.482 6.482 12 N -0.142 5.142 13 C -0.443 4.443 14 H 0.126 0.874 15 C -0.160 4.160 16 N -0.477 5.477 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.032 4.032 22 C -0.216 4.216 23 C -0.097 4.097 24 C -0.177 4.177 25 H 0.236 0.764 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.173 0.827 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.478 -6.423 12.248 17.351 hybrid contribution -0.234 0.818 -0.455 0.965 sum -10.712 -5.605 11.794 16.889 Atomic orbital electron populations 1.24952 0.95948 1.00700 0.99728 1.22669 0.94024 1.00829 1.01325 1.18453 0.84731 1.03344 0.98086 1.22603 0.79298 1.01239 0.97939 1.85913 1.20256 1.77271 1.39620 1.19058 0.92215 0.94726 0.86129 1.21071 0.99543 1.07046 0.95786 1.20947 0.93516 0.95281 0.96347 1.20214 0.93987 1.02484 0.96224 1.17641 0.83295 0.85037 0.87977 1.90600 1.67453 1.64142 1.26048 1.43732 1.18593 1.42622 1.09259 1.19623 1.19536 1.16176 0.88999 0.87413 1.25263 0.94290 0.98960 0.97535 1.70155 1.11242 1.33016 1.33333 0.86249 0.77212 0.82371 0.80958 1.20229 1.21166 1.19177 1.22228 0.93463 1.03036 0.84455 1.22221 1.01740 0.97527 1.00079 1.22025 1.01818 0.94190 0.91655 1.20317 0.90923 1.05898 1.00549 0.76359 0.88368 0.88355 0.91569 0.91567 0.85750 0.85267 0.91931 0.88407 0.92377 0.88075 0.94318 0.94793 0.82670 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 19.25 29.55 0.57 -0.96 16 2 C -0.19 -1.69 13.34 -37.12 -0.50 -2.19 16 3 C -0.01 -0.08 6.07 -29.52 -0.18 -0.26 16 4 C 0.06 0.65 4.69 37.16 0.17 0.83 16 5 O -0.32 -4.10 10.12 -18.87 -0.19 -4.29 16 6 C 0.12 1.87 6.70 -39.01 -0.26 1.61 16 7 C -0.22 -3.30 9.01 -39.50 -0.36 -3.66 16 8 C -0.04 -0.76 9.61 -39.20 -0.38 -1.14 16 9 C -0.13 -2.62 5.43 -104.96 -0.57 -3.19 16 10 C 0.47 11.99 7.33 -12.49 -0.09 11.90 16 11 O -0.60 -17.16 16.47 5.26 0.09 -17.08 16 12 N -0.43 -10.91 2.65 -116.00 -0.31 -11.21 16 13 C -0.32 -8.69 9.23 -15.00 -0.14 -8.83 16 14 H 0.11 3.17 7.43 -52.48 -0.39 2.78 16 15 C 0.05 1.15 5.03 -17.45 -0.09 1.06 16 16 N -0.84 -20.66 8.44 55.50 0.47 -20.19 16 17 Si 0.91 20.02 29.67 -169.99 -5.04 14.98 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.09 2.01 4.88 -4.03 -0.02 1.99 16 22 C -0.16 -3.22 8.39 37.16 0.31 -2.91 16 23 C -0.08 -1.42 7.36 -39.20 -0.29 -1.70 16 24 C -0.16 -2.47 9.97 -39.50 -0.39 -2.86 16 25 H 0.22 0.95 7.80 -54.09 -0.42 0.53 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.64 7.64 -51.93 -0.40 0.25 16 29 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 30 H 0.12 1.55 6.28 -52.49 -0.33 1.22 16 31 H 0.13 2.36 8.01 -52.49 -0.42 1.94 16 32 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 33 H 0.10 2.31 5.87 -51.93 -0.30 2.01 16 34 H 0.06 1.16 4.28 -51.93 -0.22 0.93 16 35 H 0.10 2.32 6.06 -51.93 -0.31 2.00 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.69 7.40 -51.93 -0.38 0.30 16 38 H 0.16 2.78 3.37 -52.48 -0.18 2.60 16 39 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -30.58 327.55 -6.84 -37.42 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.58 Total: 5.75 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.20 Total: -10.31 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.16 Total: -31.41 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.10 Total: -21.37 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.04 Total: 14.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.58 -6.84 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294473493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.867 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds