Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47444 * 116.02065 * 3 2 1 5 5 O 1.42899 * 109.47424 * 179.97438 * 4 3 2 6 6 C 1.35720 * 116.99700 * 180.02562 * 5 4 3 7 7 C 1.39011 * 119.90657 * 0.24997 * 6 5 4 8 8 C 1.37690 * 120.09012 * 180.21192 * 7 6 5 9 9 C 1.39798 * 119.90421 * 359.51458 * 8 7 6 10 10 C 1.47500 * 120.09014 * 180.27613 * 9 8 7 11 11 O 1.21620 * 119.99986 * 323.89382 * 10 9 8 12 12 N 1.34775 * 119.99700 * 143.89014 * 10 9 8 13 13 C 1.36901 * 120.00160 * 186.66565 * 12 10 9 14 14 H 1.08004 * 119.99508 * 345.57035 * 13 12 10 15 15 C 1.39020 * 120.00410 * 165.56817 * 13 12 10 16 16 N 1.31389 * 119.99918 * 35.82664 * 15 13 12 17 17 Si 1.86796 * 120.00112 * 215.82529 * 15 13 12 18 18 H 1.48500 * 109.47000 * 90.00258 * 17 15 13 19 19 H 1.48499 * 109.47337 * 209.99825 * 17 15 13 20 20 H 1.48492 * 109.47402 * 330.00021 * 17 15 13 21 21 C 1.46508 * 120.00134 * 6.67211 * 12 10 9 22 22 C 1.53008 * 109.46901 * 99.92262 * 21 12 10 23 23 C 1.39793 * 119.81524 * 0.25143 * 9 8 7 24 24 C 1.37693 * 119.90505 * 0.02562 * 23 9 8 25 25 H 4.44653 * 5.63322 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47658 * 356.02043 * 3 2 1 27 27 H 1.09002 * 109.47369 * 236.01774 * 3 2 1 28 28 H 1.08999 * 109.46711 * 59.99398 * 4 3 2 29 29 H 1.09002 * 109.46600 * 300.00179 * 4 3 2 30 30 H 1.07995 * 119.95313 * 359.97438 * 7 6 5 31 31 H 1.07992 * 120.04504 * 179.79599 * 8 7 6 32 32 H 0.96995 * 119.99655 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.46765 * 219.91854 * 21 12 10 34 34 H 1.08996 * 109.46852 * 339.92623 * 21 12 10 35 35 H 1.08996 * 109.46785 * 74.92685 * 22 21 12 36 36 H 1.09000 * 109.46584 * 194.92232 * 22 21 12 37 37 H 1.08998 * 109.47057 * 314.91994 * 22 21 12 38 38 H 1.08004 * 120.05186 * 180.02562 * 23 9 8 39 39 H 1.08004 * 119.94967 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.6337 -1.2963 5 8 4.5848 0.6349 -1.2960 6 6 5.2006 1.1662 -2.3824 7 6 4.4413 1.6815 -3.4267 8 6 5.0622 2.2175 -4.5326 9 6 6.4581 2.2522 -4.5999 10 6 7.1274 2.8310 -5.7800 11 8 6.6458 2.6813 -6.8866 12 7 8.2727 3.5258 -5.6318 13 6 8.8214 4.1778 -6.7033 14 1 8.4812 3.9538 -7.7036 15 6 9.8163 5.1280 -6.5039 16 7 10.7048 4.9589 -5.5508 17 14 9.8900 6.6454 -7.5909 18 1 9.0782 7.7299 -6.9827 19 1 11.2996 7.0946 -7.7188 20 1 9.3510 6.3179 -8.9352 21 6 8.9307 3.5834 -4.3240 22 6 10.0872 2.5821 -4.2905 23 6 7.2178 1.7374 -3.5454 24 6 6.5889 1.1980 -2.4456 25 1 -1.0501 0.0001 0.0003 26 1 3.0098 -1.0243 0.0713 27 1 3.0091 0.5752 0.8521 28 1 2.7919 1.6587 -1.3676 29 1 2.7926 0.0591 -2.1484 30 1 3.3630 1.6579 -3.3720 31 1 4.4716 2.6146 -5.3448 32 1 11.3987 5.6221 -5.4115 33 1 9.3157 4.5890 -4.1550 34 1 8.2113 3.3338 -3.5441 35 1 10.9215 2.9712 -4.8740 36 1 10.4052 2.4289 -3.2593 37 1 9.7586 1.6332 -4.7142 38 1 8.2965 1.7626 -3.5931 39 1 7.1751 0.7996 -1.6307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294473493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = 22.496745 kcal Electronic energy + Delta-G solvation = -21868.512899 eV Core-core repulsion = 18550.955428 eV Total energy + Delta-G solvation = -3317.557472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50471 -40.40857 -38.11933 -37.14077 -35.47629 -34.06307 -32.25778 -31.83317 -31.05417 -30.44267 -27.10491 -25.52821 -24.25026 -23.74574 -22.88558 -21.10983 -19.58009 -18.85942 -18.60432 -18.14330 -17.22850 -16.95048 -16.80891 -16.07964 -15.99604 -15.55819 -15.21937 -14.91144 -14.78124 -14.54642 -14.36596 -14.11697 -13.90315 -13.36705 -13.18399 -13.13276 -12.94827 -12.71561 -12.64285 -12.19241 -12.11746 -11.97778 -11.75008 -11.55482 -11.24882 -11.03392 -10.64374 -10.41005 -10.03162 -9.78979 -9.17750 -8.50304 -5.79810 0.09997 0.35780 1.34481 1.42335 1.52022 1.61991 1.88980 2.04310 2.24193 2.29186 2.74604 2.93147 3.14881 3.59633 3.78589 3.86498 3.96548 3.99418 4.09828 4.24934 4.32481 4.40894 4.49937 4.65208 4.79131 4.84276 4.85730 4.89545 5.03963 5.05894 5.13721 5.20576 5.29792 5.38177 5.50092 5.54253 5.66206 5.93809 6.06385 6.37045 6.51340 6.66057 7.14986 7.44094 8.05033 8.49133 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.003245 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.846244 B = 8626.381454 C = 9022.743804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.224 4.224 3 C -0.004 4.004 4 C 0.058 3.942 5 O -0.312 6.312 6 C 0.140 3.860 7 C -0.206 4.206 8 C -0.050 4.050 9 C -0.159 4.159 10 C 0.456 3.544 11 O -0.648 6.648 12 N -0.435 5.435 13 C -0.368 4.368 14 H 0.070 0.930 15 C 0.025 3.975 16 N -0.838 5.838 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.267 1.267 20 H -0.280 1.280 21 C 0.093 3.907 22 C -0.147 4.147 23 C -0.078 4.078 24 C -0.152 4.152 25 H 0.246 0.754 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.280 0.720 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.028 0.972 38 H 0.156 0.844 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 -6.693 15.499 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.224 4.224 3 C -0.041 4.041 4 C -0.017 4.017 5 O -0.226 6.226 6 C 0.094 3.906 7 C -0.224 4.224 8 C -0.070 4.070 9 C -0.163 4.163 10 C 0.248 3.752 11 O -0.539 6.539 12 N -0.150 5.150 13 C -0.494 4.494 14 H 0.088 0.912 15 C -0.182 4.182 16 N -0.473 5.473 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.192 1.192 20 H -0.205 1.205 21 C -0.029 4.029 22 C -0.205 4.205 23 C -0.097 4.097 24 C -0.170 4.170 25 H 0.263 0.737 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.173 0.827 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.210 -6.733 15.257 20.094 hybrid contribution -0.108 0.833 -1.234 1.493 sum -11.318 -5.900 14.022 18.961 Atomic orbital electron populations 1.25761 0.96884 0.99455 0.98325 1.23006 0.94697 1.02049 1.02631 1.18408 0.84592 1.03782 0.97274 1.22862 0.77456 1.02041 0.99360 1.85937 1.22059 1.76342 1.38257 1.19149 0.92306 0.92956 0.86218 1.21279 1.01109 1.05579 0.94453 1.20965 0.92636 0.95988 0.97384 1.19952 0.95018 1.05479 0.95811 1.18456 0.83161 0.84678 0.88913 1.90529 1.68714 1.66180 1.28496 1.43921 1.18914 1.42259 1.09929 1.19378 1.21849 1.19670 0.88508 0.91175 1.25835 0.93245 0.99953 0.99143 1.70186 1.10588 1.33224 1.33301 0.85366 0.77911 0.78899 0.78730 1.19703 1.19169 1.20541 1.22322 0.94399 1.02583 0.83574 1.22074 0.99962 0.96458 1.01977 1.21940 1.01687 0.94425 0.91616 1.20562 0.91558 1.04680 1.00204 0.73728 0.87601 0.87565 0.90925 0.90999 0.82711 0.86265 0.90945 0.90089 0.89884 0.90688 0.90403 0.95323 0.82728 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 19.25 74.32 1.43 -0.98 16 2 C -0.22 -3.45 13.34 31.12 0.42 -3.03 16 3 C 0.00 -0.06 6.07 28.79 0.17 0.12 16 4 C 0.06 0.97 4.69 71.98 0.34 1.31 16 5 O -0.31 -6.91 10.12 -90.42 -0.92 -7.82 16 6 C 0.14 3.77 6.70 22.64 0.15 3.92 16 7 C -0.21 -5.84 9.01 22.33 0.20 -5.64 16 8 C -0.05 -1.86 9.61 22.52 0.22 -1.64 16 9 C -0.16 -6.76 5.43 -20.08 -0.11 -6.87 16 10 C 0.46 24.57 7.33 86.69 0.64 25.20 16 11 O -0.65 -40.15 16.47 -4.09 -0.07 -40.22 16 12 N -0.43 -23.32 2.65 -639.15 -1.69 -25.01 16 13 C -0.37 -21.32 9.23 84.09 0.78 -20.54 16 14 H 0.07 4.49 7.43 -2.91 -0.02 4.47 16 15 C 0.03 1.30 5.03 84.95 0.43 1.73 16 16 N -0.84 -41.23 8.44 21.68 0.18 -41.04 16 17 Si 0.97 41.76 29.67 68.60 2.04 43.80 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.09 4.15 4.88 86.38 0.42 4.57 16 22 C -0.15 -5.93 8.39 71.98 0.60 -5.33 16 23 C -0.08 -2.74 7.36 22.52 0.17 -2.57 16 24 C -0.15 -4.27 9.97 22.33 0.22 -4.04 16 25 H 0.25 1.33 7.80 -4.41 -0.03 1.29 16 26 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.16 7.64 -2.39 -0.02 1.14 16 29 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 30 H 0.16 3.38 6.28 -2.91 -0.02 3.36 16 31 H 0.12 4.54 8.01 -2.91 -0.02 4.52 16 32 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 33 H 0.08 3.85 5.87 -2.39 -0.01 3.84 16 34 H 0.08 3.26 4.28 -2.39 -0.01 3.25 16 35 H 0.07 3.44 6.06 -2.39 -0.01 3.43 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.03 1.16 7.40 -2.39 -0.02 1.14 16 38 H 0.16 5.36 3.37 -2.91 -0.01 5.35 16 39 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -70.21 327.55 6.68 -63.53 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 1.07 Total: 20.57 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 6.07 Total: -13.79 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -1.51 Total: -66.05 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.98 Total: -48.04 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.04 Total: 43.80 kcal Total: -70.21 6.68 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294473493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.022 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds