Wall clock time and date at job start Tue Mar 31 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47623 * 58.54299 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46552 * 324.99743 * 13 12 10 15 15 C 1.52994 * 109.46831 * 84.99832 * 13 12 10 16 16 C 1.50696 * 109.47121 * 205.00055 * 13 12 10 17 17 H 1.08007 * 119.99903 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00127 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00430 * 179.97438 * 18 16 13 20 20 Si 1.86805 * 119.99963 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.47131 * 89.99833 * 20 18 16 22 22 H 1.48496 * 109.47244 * 209.99991 * 20 18 16 23 23 H 1.48499 * 109.46976 * 329.99900 * 20 18 16 24 24 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 25 25 C 1.37709 * 119.90833 * 359.97438 * 24 9 8 26 26 H 4.44649 * 5.63345 * 179.97438 * 4 1 2 27 27 H 1.08992 * 109.47317 * 298.53599 * 3 2 1 28 28 H 1.09005 * 109.47114 * 178.53943 * 3 2 1 29 29 H 1.09007 * 109.46974 * 59.98922 * 4 3 2 30 30 H 1.09005 * 109.46584 * 299.99968 * 4 3 2 31 31 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 33 33 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.47319 * 299.99786 * 15 13 12 35 35 H 1.08999 * 109.47626 * 60.00568 * 15 13 12 36 36 H 1.09005 * 109.46567 * 180.02562 * 15 13 12 37 37 H 0.96996 * 120.00090 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.04691 * 180.02562 * 24 9 8 39 39 H 1.07999 * 119.95155 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.7519 -1.2305 5 8 4.5854 -0.7507 -1.2308 6 6 5.2018 -1.3818 -2.2619 7 6 4.4433 -1.9854 -3.2582 8 6 5.0650 -2.6313 -4.3034 9 6 6.4604 -2.6694 -4.3679 10 6 7.1308 -3.3550 -5.4900 11 8 6.4689 -3.8871 -6.3601 12 7 8.4767 -3.3911 -5.5502 13 6 9.1422 -4.0711 -6.6643 14 1 8.5575 -4.9423 -6.9595 15 6 9.2612 -3.1111 -7.8496 16 6 10.5177 -4.5115 -6.2343 17 1 10.8620 -4.3052 -5.2316 18 6 11.3367 -5.1778 -7.1210 19 7 12.5374 -5.5618 -6.7460 20 14 10.7410 -5.5354 -8.8550 21 1 11.1094 -4.4071 -9.7475 22 1 11.3749 -6.7843 -9.3485 23 1 9.2651 -5.6990 -8.8474 24 6 7.2193 -2.0565 -3.3675 25 6 6.5900 -1.4172 -2.3227 26 1 -1.0498 -0.0003 -0.0001 27 1 3.0096 -0.4901 0.9027 28 1 3.0089 1.0282 -0.0262 29 1 2.7928 -0.2611 -2.1333 30 1 2.7936 -1.7794 -1.2043 31 1 3.3649 -1.9516 -3.2100 32 1 4.4750 -3.1039 -5.0748 33 1 9.0048 -2.9663 -4.8562 34 1 8.2663 -2.7926 -8.1606 35 1 9.8459 -2.2399 -7.5544 36 1 9.7560 -3.6172 -8.6786 37 1 13.1135 -6.0309 -7.3696 38 1 8.2980 -2.0835 -3.4140 39 1 7.1759 -0.9429 -1.5493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294766203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:38 Heat of formation + Delta-G solvation = 5.179781 kcal Electronic energy + Delta-G solvation = -21073.681397 eV Core-core repulsion = 17755.373006 eV Total energy + Delta-G solvation = -3318.308391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47227 -39.17491 -37.23879 -35.05273 -34.91632 -32.49094 -31.36506 -31.12560 -30.16983 -28.96284 -25.20107 -24.93469 -23.52783 -22.19819 -21.07006 -19.63683 -18.97164 -18.17229 -17.69566 -16.62726 -16.30542 -16.11821 -15.31617 -14.94871 -14.66887 -14.38210 -14.16008 -14.04795 -13.81333 -13.52037 -13.27713 -12.95818 -12.48496 -12.39272 -12.38300 -12.17078 -11.77595 -11.34734 -11.10562 -10.97934 -10.80856 -10.74710 -10.56946 -10.17637 -9.71986 -9.23184 -9.22477 -9.15140 -8.75341 -8.39932 -8.08373 -6.20243 -4.22808 0.97607 1.27533 2.14971 2.35744 2.91073 3.17775 3.24531 3.36379 3.41245 3.93691 4.01673 4.06913 4.32599 4.46271 4.48873 4.67137 4.77136 4.84176 5.13111 5.14627 5.22009 5.27315 5.31287 5.41244 5.48227 5.54614 5.91354 6.10864 6.20042 6.32450 6.36611 6.43407 6.54284 6.57197 6.87340 7.10715 7.13560 7.21199 7.29062 7.52214 8.15694 8.52424 8.76181 8.92395 9.40520 10.91826 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.045925 B = 0.002641 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.547585 B =10600.813365 C =11009.599744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 C -0.009 4.009 4 C 0.063 3.937 5 O -0.313 6.313 6 C 0.145 3.855 7 C -0.219 4.219 8 C -0.023 4.023 9 C -0.160 4.160 10 C 0.548 3.452 11 O -0.556 6.556 12 N -0.696 5.696 13 C 0.236 3.764 14 H 0.050 0.950 15 C -0.161 4.161 16 C -0.535 4.535 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.886 3.114 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.262 1.262 24 C -0.046 4.046 25 C -0.157 4.157 26 H 0.220 0.780 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.394 0.606 34 H 0.036 0.964 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.138 0.862 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.895 11.843 12.565 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.046 4.046 4 C -0.012 4.012 5 O -0.226 6.226 6 C 0.100 3.900 7 C -0.238 4.238 8 C -0.042 4.042 9 C -0.164 4.164 10 C 0.334 3.666 11 O -0.437 6.437 12 N -0.344 5.344 13 C 0.132 3.868 14 H 0.068 0.932 15 C -0.219 4.219 16 C -0.573 4.573 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.186 1.186 24 C -0.065 4.065 25 C -0.176 4.176 26 H 0.237 0.763 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.229 0.771 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.055 11.453 12.041 25.283 hybrid contribution -0.243 -0.067 -0.714 0.757 sum -19.297 11.386 11.327 25.107 Atomic orbital electron populations 1.24978 0.95975 1.00332 0.99582 1.22615 0.93975 1.01108 1.01495 1.18437 0.84834 1.02680 0.98601 1.22688 0.78687 1.01109 0.98742 1.85943 1.20774 1.71797 1.44111 1.19154 0.92280 0.91872 0.86722 1.21182 1.00088 1.05431 0.97057 1.21066 0.93433 0.93593 0.96109 1.20138 0.94303 1.04212 0.97700 1.18147 0.82991 0.80242 0.85193 1.90720 1.65014 1.47341 1.40597 1.46136 1.05085 1.55500 1.27634 1.19132 0.93536 0.91137 0.82945 0.93243 1.22449 0.99392 1.00744 0.99345 1.21029 0.96984 1.38250 1.00994 0.90162 1.24833 0.94516 0.94585 0.98646 1.69868 1.08099 1.38794 1.36140 0.86870 0.79852 0.77054 0.84690 1.20292 1.22155 1.18638 1.21241 1.00219 0.93308 0.91737 1.20332 0.91072 1.05103 1.01090 0.76311 0.88260 0.88280 0.91315 0.91284 0.85155 0.84416 0.77122 0.94488 0.92766 0.93419 0.92286 0.84426 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 19.25 29.55 0.57 -0.65 16 2 C -0.19 -1.41 13.34 -37.12 -0.50 -1.90 16 3 C -0.01 -0.06 6.07 -29.52 -0.18 -0.24 16 4 C 0.06 0.47 4.69 37.16 0.17 0.65 16 5 O -0.31 -3.13 10.12 -18.81 -0.19 -3.32 16 6 C 0.15 1.67 6.70 -39.02 -0.26 1.41 16 7 C -0.22 -2.52 9.01 -39.49 -0.36 -2.88 16 8 C -0.02 -0.32 9.58 -39.22 -0.38 -0.70 16 9 C -0.16 -2.51 5.87 -104.96 -0.62 -3.12 16 10 C 0.55 10.85 7.73 -12.44 -0.10 10.76 16 11 O -0.56 -12.88 16.00 5.29 0.08 -12.79 16 12 N -0.70 -14.14 5.02 -55.96 -0.28 -14.42 16 13 C 0.24 5.70 2.15 -69.08 -0.15 5.55 16 14 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 15 C -0.16 -3.64 8.97 37.15 0.33 -3.31 16 16 C -0.53 -14.48 9.31 -34.44 -0.32 -14.80 16 17 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 18 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 19 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 20 Si 0.89 21.86 24.38 -169.99 -4.14 17.72 16 21 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 24 C -0.05 -0.60 9.53 -39.22 -0.37 -0.98 16 25 C -0.16 -1.82 9.97 -39.50 -0.39 -2.21 16 26 H 0.22 0.67 7.80 -54.10 -0.42 0.25 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 30 H 0.07 0.49 7.66 -51.93 -0.40 0.10 16 31 H 0.13 1.18 6.28 -52.48 -0.33 0.85 16 32 H 0.14 1.93 7.64 -52.49 -0.40 1.52 16 33 H 0.39 6.96 6.56 -40.82 -0.27 6.69 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.11 3.28 -51.93 -0.17 0.94 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.14 1.59 6.39 -52.48 -0.34 1.25 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -32.89 334.41 -6.13 -39.02 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.78 Total: 4.74 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.64 Total: -10.34 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.49 Total: -40.06 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.11 Total: -16.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.89 -6.13 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294766203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.199 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds