Wall clock time and date at job start Tue Mar 31 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47623 * 58.54299 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.46552 * 324.99743 * 13 12 10 15 15 C 1.52994 * 109.46831 * 84.99832 * 13 12 10 16 16 C 1.50696 * 109.47121 * 205.00055 * 13 12 10 17 17 H 1.08007 * 119.99903 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00127 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00430 * 179.97438 * 18 16 13 20 20 Si 1.86805 * 119.99963 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.47131 * 89.99833 * 20 18 16 22 22 H 1.48496 * 109.47244 * 209.99991 * 20 18 16 23 23 H 1.48499 * 109.46976 * 329.99900 * 20 18 16 24 24 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 25 25 C 1.37709 * 119.90833 * 359.97438 * 24 9 8 26 26 H 4.44649 * 5.63345 * 179.97438 * 4 1 2 27 27 H 1.08992 * 109.47317 * 298.53599 * 3 2 1 28 28 H 1.09005 * 109.47114 * 178.53943 * 3 2 1 29 29 H 1.09007 * 109.46974 * 59.98922 * 4 3 2 30 30 H 1.09005 * 109.46584 * 299.99968 * 4 3 2 31 31 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 33 33 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.47319 * 299.99786 * 15 13 12 35 35 H 1.08999 * 109.47626 * 60.00568 * 15 13 12 36 36 H 1.09005 * 109.46567 * 180.02562 * 15 13 12 37 37 H 0.96996 * 120.00090 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.04691 * 180.02562 * 24 9 8 39 39 H 1.07999 * 119.95155 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.7519 -1.2305 5 8 4.5854 -0.7507 -1.2308 6 6 5.2018 -1.3818 -2.2619 7 6 4.4433 -1.9854 -3.2582 8 6 5.0650 -2.6313 -4.3034 9 6 6.4604 -2.6694 -4.3679 10 6 7.1308 -3.3550 -5.4900 11 8 6.4689 -3.8871 -6.3601 12 7 8.4767 -3.3911 -5.5502 13 6 9.1422 -4.0711 -6.6643 14 1 8.5575 -4.9423 -6.9595 15 6 9.2612 -3.1111 -7.8496 16 6 10.5177 -4.5115 -6.2343 17 1 10.8620 -4.3052 -5.2316 18 6 11.3367 -5.1778 -7.1210 19 7 12.5374 -5.5618 -6.7460 20 14 10.7410 -5.5354 -8.8550 21 1 11.1094 -4.4071 -9.7475 22 1 11.3749 -6.7843 -9.3485 23 1 9.2651 -5.6990 -8.8474 24 6 7.2193 -2.0565 -3.3675 25 6 6.5900 -1.4172 -2.3227 26 1 -1.0498 -0.0003 -0.0001 27 1 3.0096 -0.4901 0.9027 28 1 3.0089 1.0282 -0.0262 29 1 2.7928 -0.2611 -2.1333 30 1 2.7936 -1.7794 -1.2043 31 1 3.3649 -1.9516 -3.2100 32 1 4.4750 -3.1039 -5.0748 33 1 9.0048 -2.9663 -4.8562 34 1 8.2663 -2.7926 -8.1606 35 1 9.8459 -2.2399 -7.5544 36 1 9.7560 -3.6172 -8.6786 37 1 13.1135 -6.0309 -7.3696 38 1 8.2980 -2.0835 -3.4140 39 1 7.1759 -0.9429 -1.5493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294766203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:37 Heat of formation + Delta-G solvation = -16.137984 kcal Electronic energy + Delta-G solvation = -21074.605805 eV Core-core repulsion = 17755.373006 eV Total energy + Delta-G solvation = -3319.232799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48439 -40.51621 -38.30434 -36.84021 -35.49798 -34.45641 -32.50672 -32.22231 -31.19513 -30.17957 -27.23154 -25.67960 -24.79153 -23.09671 -22.65683 -21.23033 -19.77114 -19.36369 -18.62907 -18.04100 -17.51841 -17.27890 -16.77240 -16.34554 -15.89647 -15.74339 -15.16407 -14.96861 -14.79319 -14.68690 -14.59486 -14.41078 -14.13854 -13.78037 -13.48512 -13.32974 -13.12815 -13.08470 -12.78719 -12.14967 -11.96694 -11.87330 -11.62743 -11.28590 -11.26418 -11.04986 -10.90848 -10.84962 -10.12069 -9.96337 -9.27651 -8.37820 -6.43788 -0.11631 0.30889 1.27762 1.36040 1.45723 1.59224 1.87750 1.89721 2.23518 2.26581 2.40889 2.85066 2.98548 3.57460 3.70321 3.81039 3.85388 3.97262 4.04329 4.19036 4.30806 4.36294 4.44618 4.52518 4.56744 4.69538 4.83762 4.85109 4.96399 4.98685 5.12424 5.13162 5.23144 5.28743 5.39777 5.42147 5.56899 5.62762 6.13782 6.28753 6.56989 6.64912 6.83435 7.18365 7.39085 8.77165 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.045925 B = 0.002641 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.547585 B =10600.813365 C =11009.599744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.224 4.224 3 C -0.005 4.005 4 C 0.058 3.942 5 O -0.313 6.313 6 C 0.155 3.845 7 C -0.213 4.213 8 C -0.029 4.029 9 C -0.187 4.187 10 C 0.548 3.452 11 O -0.597 6.597 12 N -0.695 5.695 13 C 0.240 3.760 14 H 0.023 0.977 15 C -0.155 4.155 16 C -0.533 4.533 17 H 0.059 0.941 18 C 0.029 3.971 19 N -0.932 5.932 20 Si 0.938 3.062 21 H -0.258 1.258 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.042 4.042 25 C -0.157 4.157 26 H 0.245 0.755 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.131 0.869 33 H 0.406 0.594 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.271 0.729 38 H 0.148 0.852 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 13.378 13.454 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.224 4.224 3 C -0.042 4.042 4 C -0.017 4.017 5 O -0.226 6.226 6 C 0.108 3.892 7 C -0.232 4.232 8 C -0.048 4.048 9 C -0.190 4.190 10 C 0.337 3.663 11 O -0.480 6.480 12 N -0.344 5.344 13 C 0.136 3.864 14 H 0.041 0.959 15 C -0.213 4.213 16 C -0.571 4.571 17 H 0.077 0.923 18 C -0.171 4.171 19 N -0.570 5.570 20 Si 0.766 3.234 21 H -0.184 1.184 22 H -0.219 1.219 23 H -0.189 1.189 24 C -0.061 4.061 25 C -0.175 4.175 26 H 0.262 0.738 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.149 0.851 33 H 0.243 0.757 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.166 0.834 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.760 13.020 12.962 27.722 hybrid contribution 0.157 -0.481 -0.797 0.944 sum -20.602 12.539 12.166 27.013 Atomic orbital electron populations 1.25758 0.96909 0.99308 0.98468 1.23001 0.94697 1.02124 1.02562 1.18416 0.84539 1.02996 0.98225 1.22892 0.77181 1.01841 0.99775 1.85958 1.22284 1.71069 1.43255 1.19294 0.92486 0.90764 0.86627 1.21361 1.01407 1.04379 0.96012 1.21091 0.92798 0.94091 0.96852 1.19852 0.94998 1.06572 0.97622 1.18737 0.82372 0.79463 0.85714 1.90683 1.65650 1.49199 1.42463 1.45952 1.05680 1.55551 1.27240 1.18812 0.91625 0.91230 0.84779 0.95927 1.22343 1.00080 1.00609 0.98278 1.21224 0.98140 1.37653 1.00071 0.92306 1.25549 0.94611 0.94628 1.02297 1.69970 1.09332 1.40122 1.37610 0.86010 0.79087 0.77498 0.80831 1.18398 1.21871 1.18885 1.21328 1.00685 0.92759 0.91324 1.20574 0.91500 1.04461 1.00952 0.73846 0.87665 0.87591 0.90605 0.90710 0.82614 0.85130 0.75676 0.93645 0.91451 0.93918 0.92014 0.83404 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 19.25 74.32 1.43 -0.54 16 2 C -0.22 -2.84 13.34 31.12 0.42 -2.42 16 3 C -0.01 -0.06 6.07 28.79 0.17 0.12 16 4 C 0.06 0.71 4.69 71.98 0.34 1.05 16 5 O -0.31 -5.33 10.12 -90.23 -0.91 -6.24 16 6 C 0.15 3.13 6.70 22.63 0.15 3.28 16 7 C -0.21 -4.43 9.01 22.33 0.20 -4.23 16 8 C -0.03 -0.79 9.58 22.51 0.22 -0.58 16 9 C -0.19 -5.76 5.87 -20.08 -0.12 -5.88 16 10 C 0.55 21.91 7.73 86.71 0.67 22.58 16 11 O -0.60 -28.19 16.00 -3.99 -0.06 -28.25 16 12 N -0.70 -28.42 5.02 -449.22 -2.25 -30.68 16 13 C 0.24 11.68 2.15 44.24 0.10 11.78 16 14 H 0.02 1.23 6.63 -2.39 -0.02 1.22 16 15 C -0.16 -6.88 8.97 71.98 0.65 -6.23 16 16 C -0.53 -29.26 9.31 25.60 0.24 -29.03 16 17 H 0.06 3.41 7.98 -2.91 -0.02 3.38 16 18 C 0.03 1.65 5.45 84.65 0.46 2.11 16 19 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 20 Si 0.94 45.05 24.38 68.60 1.67 46.72 16 21 H -0.26 -11.61 6.87 99.48 0.68 -10.92 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 23 H -0.26 -12.70 6.53 99.48 0.65 -12.05 16 24 C -0.04 -1.04 9.53 22.51 0.21 -0.82 16 25 C -0.16 -3.21 9.97 22.33 0.22 -2.99 16 26 H 0.25 0.83 7.80 -4.43 -0.03 0.80 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.08 0.85 7.64 -2.38 -0.02 0.84 16 30 H 0.07 0.86 7.66 -2.38 -0.02 0.84 16 31 H 0.16 2.37 6.28 -2.91 -0.02 2.35 16 32 H 0.13 3.67 7.64 -2.91 -0.02 3.64 16 33 H 0.41 14.34 6.56 -92.71 -0.61 13.73 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.04 1.92 3.28 -2.38 -0.01 1.91 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.15 3.21 6.39 -2.91 -0.02 3.19 16 39 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -71.00 334.41 4.48 -66.52 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.38 Total: 19.28 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.36 Total: -11.80 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -1.96 Total: -86.23 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.98 Total: -34.49 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Total: -71.00 4.48 -66.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294766203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.384 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds