Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21254 * 119.99599 * 2 1 4 4 C 1.47161 * 120.00034 * 180.02562 * 2 1 3 5 5 C 1.39855 * 120.17129 * 0.25059 * 4 2 1 6 6 C 1.37888 * 119.82161 * 180.23510 * 5 4 2 7 7 C 1.38407 * 120.17474 * 359.51007 * 6 5 4 8 8 C 1.50689 * 119.82796 * 180.27819 * 7 6 5 9 9 C 1.50703 * 109.47151 * 90.00494 * 8 7 6 10 10 O 1.21294 * 119.99973 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00203 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00195 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00279 * 224.47421 * 12 11 9 14 14 C 1.38956 * 119.99823 * 44.47805 * 12 11 9 15 15 N 1.31411 * 119.99897 * 18.00427 * 14 12 11 16 16 Si 1.86796 * 120.00089 * 198.00769 * 14 12 11 17 17 H 1.48502 * 109.47116 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47195 * 119.99702 * 16 14 12 19 19 H 1.48502 * 109.47038 * 239.99619 * 16 14 12 20 20 C 1.46500 * 120.00173 * 359.97438 * 11 9 8 21 21 C 1.52994 * 117.50127 * 183.20704 * 20 11 9 22 22 C 1.53001 * 117.49987 * 114.54221 * 20 11 9 23 23 C 1.38404 * 120.34721 * 0.25967 * 7 6 5 24 24 C 1.37891 * 120.17123 * 359.97438 * 23 7 6 25 25 H 1.08999 * 109.47036 * 269.99850 * 1 2 3 26 26 H 1.09001 * 109.47154 * 29.99912 * 1 2 3 27 27 H 1.08998 * 109.46653 * 149.99920 * 1 2 3 28 28 H 1.07993 * 120.08923 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.91281 * 179.79509 * 6 5 4 30 30 H 1.09002 * 109.47416 * 210.00411 * 8 7 6 31 31 H 1.09004 * 109.47418 * 330.00223 * 8 7 6 32 32 H 0.97000 * 120.00092 * 174.96706 * 15 14 12 33 33 H 1.09004 * 115.55072 * 328.88197 * 20 11 9 34 34 H 1.08994 * 117.50085 * 359.97438 * 21 20 11 35 35 H 1.09006 * 117.50075 * 145.02466 * 21 20 11 36 36 H 1.08995 * 117.50161 * 214.98141 * 22 20 11 37 37 H 1.09004 * 117.49520 * 359.97438 * 22 20 11 38 38 H 1.07999 * 119.91414 * 179.97438 * 23 7 6 39 39 H 1.08003 * 120.08481 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 1.5473 -2.4877 -0.0064 6 6 2.2440 -3.6776 -0.0020 7 6 3.6280 -3.6734 -0.0020 8 6 4.3815 -4.9784 -0.0036 9 6 4.6327 -5.4118 -1.4249 10 8 4.2382 -4.7283 -2.3460 11 7 5.2949 -6.5593 -1.6725 12 6 5.5230 -6.9538 -2.9655 13 1 5.3597 -7.9818 -3.2532 14 6 5.9642 -6.0308 -3.9059 15 7 6.4969 -4.8957 -3.5127 16 14 5.8001 -6.4036 -5.7289 17 1 5.1728 -7.7378 -5.9069 18 1 4.9522 -5.3677 -6.3717 19 1 7.1455 -6.4019 -6.3576 20 6 5.7709 -7.3851 -0.5600 21 6 6.5806 -8.6364 -0.9051 22 6 5.1452 -8.7710 -0.3907 23 6 4.3237 -2.4769 -0.0011 24 6 3.6414 -1.2786 -0.0007 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3632 -0.8900 -0.5138 28 1 0.4674 -2.4926 -0.0101 29 1 1.7082 -4.6154 -0.0031 30 1 5.3339 -4.8487 0.5104 31 1 3.7925 -5.7387 0.5094 32 1 6.8712 -4.2837 -4.1656 33 1 6.0442 -6.8424 0.3449 34 1 6.7589 -8.8456 -1.9598 35 1 7.3865 -8.9173 -0.2269 36 1 5.0073 -9.1402 0.6255 37 1 4.3790 -9.0681 -1.1068 38 1 5.4036 -2.4818 -0.0008 39 1 4.1857 -0.3457 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299317536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = -9.343124 kcal Electronic energy + Delta-G solvation = -22220.492148 eV Core-core repulsion = 18901.553997 eV Total energy + Delta-G solvation = -3318.938152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87524 -38.80279 -37.82982 -36.03105 -33.11110 -32.41752 -31.15525 -30.82135 -29.81767 -27.44870 -24.81832 -22.58873 -22.25046 -21.72198 -21.15966 -19.72917 -19.14400 -16.87303 -16.43294 -16.07258 -15.61636 -15.16827 -14.92192 -14.68460 -14.34337 -14.20975 -13.87846 -13.56554 -13.39058 -13.19049 -12.85992 -12.39944 -12.21943 -12.03837 -11.78134 -11.52502 -11.21171 -11.09521 -10.91819 -10.89296 -10.74808 -10.46860 -10.17311 -10.00496 -9.77477 -9.66892 -8.77524 -8.68752 -8.49520 -7.99101 -7.04967 -6.13273 -3.89006 0.87888 1.69808 2.56754 3.28112 3.37612 3.40295 4.01027 4.09418 4.14927 4.27177 4.73128 4.83724 4.94090 5.01784 5.17177 5.19020 5.27104 5.30534 5.42214 5.54711 5.62523 5.67226 5.68922 5.73468 5.85278 5.95174 5.98640 6.10387 6.18091 6.20355 6.32148 6.42983 6.51328 6.65594 6.71475 6.89913 6.93720 7.18356 7.58920 7.60332 8.25227 9.03989 9.13513 9.63900 10.26480 10.95839 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.004549 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.602554 B = 6154.116714 C = 7050.970033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.470 6.470 4 C -0.191 4.191 5 C -0.073 4.073 6 C -0.124 4.124 7 C -0.003 4.003 8 C -0.109 4.109 9 C 0.487 3.513 10 O -0.524 6.524 11 N -0.429 5.429 12 C -0.349 4.349 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.833 5.833 16 Si 0.911 3.089 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.285 1.285 20 C 0.074 3.926 21 C -0.174 4.174 22 C -0.208 4.208 23 C -0.116 4.116 24 C -0.058 4.058 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.264 0.736 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 0.683 10.339 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.278 3.722 3 O -0.347 6.347 4 C -0.192 4.192 5 C -0.091 4.091 6 C -0.142 4.142 7 C -0.004 4.004 8 C -0.149 4.149 9 C 0.274 3.726 10 O -0.401 6.401 11 N -0.150 5.150 12 C -0.475 4.475 13 H 0.095 0.905 14 C -0.136 4.136 15 N -0.466 5.466 16 Si 0.738 3.262 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.032 4.032 21 C -0.211 4.211 22 C -0.247 4.247 23 C -0.134 4.134 24 C -0.076 4.076 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.256 1.822 9.766 12.302 hybrid contribution 0.154 -0.367 -0.905 0.989 sum -7.102 1.455 8.860 11.448 Atomic orbital electron populations 1.22231 0.94216 1.04805 1.04463 1.22494 0.91483 0.87782 0.70448 1.90506 1.72245 1.34504 1.37426 1.20334 0.94620 0.94375 1.09890 1.21306 0.99479 0.91496 0.96843 1.20944 0.93706 0.98010 1.01546 1.19792 0.93576 0.94638 0.92352 1.20863 1.00556 0.94434 0.99073 1.19543 0.81169 0.83475 0.88420 1.90568 1.51475 1.52357 1.45679 1.42761 1.48584 1.19951 1.03727 1.18864 1.48785 0.96291 0.83601 0.90522 1.25232 0.93637 0.95164 0.99576 1.69816 1.32484 1.09529 1.34765 0.86178 0.77585 0.78490 0.83969 1.19577 1.20668 1.21180 1.21713 1.01708 0.86681 0.93139 1.23068 0.93145 1.02127 1.02776 1.23328 0.97097 1.03156 1.01126 1.21013 1.00354 0.91551 1.00497 1.21297 0.93057 0.98378 0.94906 0.88677 0.89706 0.89448 0.85466 0.85706 0.89489 0.89430 0.92637 0.88041 0.87495 0.89810 0.89801 0.89128 0.85545 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 9.76 36.01 0.35 -1.51 16 2 C 0.40 5.55 7.23 -30.68 -0.22 5.33 16 3 O -0.47 -8.01 17.09 5.58 0.10 -7.92 16 4 C -0.19 -2.90 5.87 -105.07 -0.62 -3.52 16 5 C -0.07 -1.01 9.37 -39.10 -0.37 -1.37 16 6 C -0.12 -1.94 9.68 -39.65 -0.38 -2.32 16 7 C 0.00 -0.05 4.38 -104.50 -0.46 -0.51 16 8 C -0.11 -1.97 4.44 -29.04 -0.13 -2.10 16 9 C 0.49 11.81 6.96 -10.98 -0.08 11.73 16 10 O -0.52 -15.01 13.81 5.54 0.08 -14.94 16 11 N -0.43 -10.35 2.83 -107.73 -0.31 -10.65 16 12 C -0.35 -9.32 7.91 -14.93 -0.12 -9.44 16 13 H 0.08 2.00 7.26 -52.49 -0.38 1.62 16 14 C 0.07 2.07 4.39 -17.47 -0.08 2.00 16 15 N -0.83 -24.42 11.74 55.50 0.65 -23.76 16 16 Si 0.91 21.84 29.59 -169.99 -5.03 16.81 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.07 1.40 5.87 -67.93 -0.40 1.01 16 21 C -0.17 -3.01 9.80 -26.69 -0.26 -3.27 16 22 C -0.21 -3.37 10.36 -26.69 -0.28 -3.64 16 23 C -0.12 -2.04 9.68 -39.65 -0.38 -2.43 16 24 C -0.06 -0.97 9.60 -39.11 -0.38 -1.34 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.69 6.46 -51.93 -0.34 0.35 16 28 H 0.13 1.28 6.35 -52.49 -0.33 0.95 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.44 7.51 -51.93 -0.39 1.05 16 31 H 0.09 1.34 8.05 -51.93 -0.42 0.93 16 32 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 33 H 0.10 1.69 6.96 -51.93 -0.36 1.33 16 34 H 0.11 2.08 6.73 -51.93 -0.35 1.73 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.13 2.02 7.65 -52.48 -0.40 1.62 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -34.18 333.79 -8.34 -42.51 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.06 Total: 4.29 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.79 Total: -11.38 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.35 Total: -34.41 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.17 Total: -22.85 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.18 -8.34 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299317536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.172 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds