Wall clock time and date at job start Tue Mar 31 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 120.00186 * 2 1 4 4 C 1.50697 * 109.46529 * 269.99923 * 3 2 1 5 5 H 1.08002 * 120.00599 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99675 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.34777 * 119.99984 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99907 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99693 * 359.97438 * 12 2 1 15 15 S 1.81401 * 109.46823 * 180.02562 * 14 12 2 16 16 C 1.81399 * 102.99979 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47266 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.47548 * 305.02308 * 17 16 15 19 19 C 1.53095 * 109.48147 * 185.00282 * 17 16 15 20 20 C 1.53177 * 109.16251 * 182.40730 * 19 17 16 21 21 C 1.53184 * 109.03739 * 56.98085 * 20 19 17 22 22 C 1.53096 * 109.15781 * 303.01771 * 21 20 19 23 23 O 1.42901 * 109.47958 * 65.05687 * 17 16 15 24 24 H 1.09001 * 109.47109 * 89.99942 * 1 2 3 25 25 H 1.09002 * 109.47324 * 210.00459 * 1 2 3 26 26 H 1.09004 * 109.47257 * 330.00426 * 1 2 3 27 27 H 1.08995 * 109.46912 * 150.00026 * 3 2 1 28 28 H 1.09007 * 109.46641 * 29.99658 * 3 2 1 29 29 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47404 * 299.99985 * 14 12 2 31 31 H 1.09000 * 109.46937 * 60.00473 * 14 12 2 32 32 H 1.09003 * 109.47187 * 299.99950 * 16 15 14 33 33 H 1.09001 * 109.47073 * 60.00051 * 16 15 14 34 34 H 1.09001 * 109.51957 * 302.31378 * 19 17 16 35 35 H 1.09002 * 109.52580 * 62.49736 * 19 17 16 36 36 H 1.08999 * 109.53966 * 176.84205 * 20 19 17 37 37 H 1.08999 * 109.54572 * 297.02358 * 20 19 17 38 38 H 1.09001 * 109.52314 * 62.91707 * 21 20 19 39 39 H 1.08996 * 109.52509 * 183.05138 * 21 20 19 40 40 H 1.08999 * 109.47679 * 177.59108 * 22 21 20 41 41 H 1.08991 * 109.48276 * 297.61158 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8778 -1.6728 7 7 3.3457 3.2572 -2.9128 8 14 3.7331 3.9291 -0.2531 9 1 2.6812 4.9074 0.1235 10 1 4.0398 3.0596 0.9110 11 1 4.9606 4.6562 -0.6650 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 16 2.5641 -3.8511 0.0029 16 6 1.4858 -5.3098 0.0034 17 6 2.3426 -6.5774 0.0051 18 1 3.0353 -6.5489 -0.8359 19 6 1.4374 -7.8057 -0.1203 20 6 2.2968 -9.0721 -0.0573 21 6 3.0954 -9.0696 1.2498 22 6 3.9366 -7.7924 1.3222 23 8 3.0793 -6.6530 1.2273 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1500 1.1384 0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.8226 4.0831 -3.0900 30 1 0.7590 -2.5294 0.8919 31 1 0.7584 -2.5306 -0.8881 32 1 0.8563 -5.2960 0.8932 33 1 0.8570 -5.2971 -0.8868 34 1 0.7177 -7.8128 0.6983 35 1 0.9075 -7.7720 -1.0722 36 1 1.6533 -9.9513 -0.0897 37 1 2.9821 -9.0903 -0.9048 38 1 2.4091 -9.1021 2.0961 39 1 3.7504 -9.9403 1.2783 40 1 4.4744 -7.7647 2.2699 41 1 4.6504 -7.7802 0.4987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330474632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:36 Heat of formation + Delta-G solvation = -109.800872 kcal Electronic energy + Delta-G solvation = -20327.699978 eV Core-core repulsion = 17139.849602 eV Total energy + Delta-G solvation = -3187.850375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65003 -40.31072 -36.69374 -34.75053 -34.54239 -33.78833 -31.88718 -29.64004 -28.77306 -27.32621 -25.18705 -24.41792 -23.31786 -21.18689 -20.26484 -19.17722 -18.03512 -17.70251 -17.42994 -16.90571 -16.82575 -16.63779 -15.92115 -15.53505 -15.49240 -14.80905 -14.70978 -14.53209 -14.21393 -14.09690 -13.88095 -13.66365 -13.51679 -13.41567 -13.23054 -12.89498 -12.74449 -12.38312 -12.20233 -12.05033 -11.98467 -11.77959 -11.64874 -11.24555 -10.89141 -10.83077 -10.80594 -10.33041 -9.47288 -8.61783 -8.35369 -6.40748 0.47817 1.31073 1.36565 1.47370 1.64615 1.67905 2.29708 2.31295 2.79044 2.98679 3.58884 3.68631 3.92739 3.93666 4.04395 4.05258 4.12117 4.19956 4.26435 4.41533 4.42656 4.49748 4.66358 4.68788 4.73476 4.73602 4.88054 4.92566 4.94539 4.95988 5.07413 5.13553 5.18766 5.39403 5.43807 5.56225 6.20930 6.29895 6.57128 6.60782 7.18120 7.32633 8.81814 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.002923 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.684064 B = 9577.726719 C = 9802.877308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.223 3.777 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.248 1.248 10 H -0.257 1.257 11 H -0.282 1.282 12 C 0.509 3.491 13 O -0.579 6.579 14 C -0.102 4.102 15 S -0.250 6.250 16 C -0.082 4.082 17 C 0.104 3.896 18 H 0.055 0.945 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.152 4.152 22 C 0.051 3.949 23 O -0.395 6.395 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.269 0.731 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 -24.620 9.658 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C 0.101 3.899 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.172 1.172 10 H -0.181 1.181 11 H -0.208 1.208 12 C 0.297 3.703 13 O -0.459 6.459 14 C -0.253 4.253 15 S -0.024 6.024 16 C -0.230 4.230 17 C 0.045 3.955 18 H 0.073 0.927 19 C -0.177 4.177 20 C -0.161 4.161 21 C -0.189 4.189 22 C -0.025 4.025 23 O -0.315 6.315 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.139 -24.255 9.701 27.362 hybrid contribution -0.561 0.727 -0.343 0.980 sum -8.700 -23.529 9.359 26.774 Atomic orbital electron populations 1.22038 0.77142 1.04865 1.02542 1.47875 1.08661 1.05519 1.71415 1.19396 0.92842 0.82260 0.95412 1.21549 1.36977 1.06761 0.92356 0.95450 1.25885 0.95206 0.99010 0.98735 1.70054 1.42713 1.24483 1.21330 0.85683 0.78879 0.78962 0.79268 1.17158 1.18087 1.20776 1.20408 0.87601 0.85840 0.76487 1.90684 1.16216 1.87569 1.51454 1.23449 1.00667 0.92106 1.09045 1.88135 1.15934 1.00092 1.98194 1.23600 0.99779 0.92512 1.07101 1.21805 0.93058 0.93276 0.87334 0.92733 1.22166 0.98269 0.93206 1.04093 1.21624 0.99012 0.97933 0.97518 1.22169 0.99951 0.98033 0.98769 1.22738 0.92049 0.85286 1.02433 1.88006 1.59159 1.45962 1.38329 0.92840 0.87793 0.89769 0.96354 0.92737 0.92219 0.84064 0.85306 0.88161 0.86431 0.90349 0.89067 0.89674 0.91748 0.91072 0.89414 0.88408 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.29 127.77 1.31 3.38 16 2 N -0.60 -24.72 2.86 -851.10 -2.43 -27.15 16 3 C 0.22 11.10 4.27 85.63 0.37 11.47 16 4 C -0.54 -32.35 9.94 25.60 0.25 -32.09 16 5 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 8 Si 0.95 45.15 27.47 68.60 1.88 47.04 16 9 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.26 -11.87 6.54 99.48 0.65 -11.21 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 C 0.51 21.49 7.69 87.66 0.67 22.16 16 13 O -0.58 -31.12 15.44 -3.03 -0.05 -31.16 16 14 C -0.10 -2.91 4.98 71.24 0.35 -2.55 16 15 S -0.25 -7.95 20.66 -56.49 -1.17 -9.11 16 16 C -0.08 -1.59 5.63 71.98 0.41 -1.19 16 17 C 0.10 2.01 2.64 30.63 0.08 2.09 16 18 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 19 C -0.14 -1.72 5.42 30.68 0.17 -1.55 16 20 C -0.12 -1.35 6.03 30.71 0.19 -1.17 16 21 C -0.15 -1.83 6.14 30.69 0.19 -1.64 16 22 C 0.05 0.89 6.84 72.01 0.49 1.39 16 23 O -0.39 -9.29 10.16 -148.98 -1.51 -10.80 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.10 1.84 6.44 -2.39 -0.02 1.83 16 26 H 0.08 2.07 7.89 -2.38 -0.02 2.05 16 27 H 0.02 1.00 6.48 -2.39 -0.02 0.99 16 28 H 0.05 2.41 7.32 -2.38 -0.02 2.39 16 29 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 30 H 0.14 2.90 7.40 -2.39 -0.02 2.88 16 31 H 0.13 3.01 8.11 -2.39 -0.02 2.99 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.75 344.35 2.90 -80.85 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.93 Total: 9.50 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.95 Total: 1.33 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -2.13 Total: -87.64 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.56 Total: -41.97 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.17 Total: -9.11 kcal Total: -83.75 2.90 -80.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330474632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.952 kcal (2) G-P(sol) polarization free energy of solvation -83.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds