Wall clock time and date at job start Tue Mar 31 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00427 * 2 1 4 4 C 1.53001 * 109.46915 * 90.00012 * 3 2 1 5 5 C 1.52998 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.46616 * 299.99951 * 5 4 3 7 7 N 1.46495 * 109.47167 * 299.99937 * 6 5 4 8 8 C 1.46502 * 120.00164 * 359.19231 * 7 6 5 9 9 C 1.34778 * 119.99920 * 179.19555 * 7 6 5 10 10 O 1.21285 * 119.99929 * 359.97438 * 9 7 6 11 11 C 1.50699 * 119.99866 * 179.97438 * 9 7 6 12 12 S 1.81003 * 109.47031 * 179.97438 * 11 9 7 13 13 C 1.76200 * 100.00100 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99793 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99859 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00395 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99694 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47435 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46990 * 119.99861 * 17 15 13 20 20 H 1.48491 * 109.47364 * 239.99878 * 17 15 13 21 21 C 1.53001 * 109.47046 * 60.00341 * 6 5 4 22 22 C 1.52993 * 109.47527 * 210.00050 * 3 2 1 23 23 H 1.08992 * 109.47225 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46944 * 299.99643 * 1 2 3 25 25 H 1.08999 * 109.47045 * 59.99323 * 1 2 3 26 26 H 1.09004 * 109.46776 * 330.00706 * 3 2 1 27 27 H 1.08998 * 109.47502 * 60.00164 * 4 3 2 28 28 H 1.09006 * 109.47498 * 300.00600 * 4 3 2 29 29 H 1.09000 * 109.47606 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47455 * 59.99818 * 5 4 3 31 31 H 1.09001 * 109.46603 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.47158 * 95.91937 * 8 7 6 33 33 H 1.09001 * 109.46990 * 215.91814 * 8 7 6 34 34 H 1.09005 * 109.47031 * 335.91794 * 8 7 6 35 35 H 1.08996 * 109.47252 * 299.99817 * 11 9 7 36 36 H 1.09006 * 109.47282 * 59.99904 * 11 9 7 37 37 H 0.96998 * 120.00375 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47382 * 59.99358 * 21 6 5 39 39 H 1.08999 * 109.46870 * 180.02562 * 21 6 5 40 40 H 1.09001 * 109.46949 * 60.00320 * 22 3 2 41 41 H 1.08995 * 109.47079 * 300.00257 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2178 1.7713 1.4425 5 6 2.8396 3.1692 1.4426 6 6 4.1883 3.1274 0.7212 7 7 5.0827 2.1950 1.4116 8 6 4.6238 1.4934 2.6130 9 6 6.3279 1.9827 0.9415 10 8 6.7077 2.5633 -0.0533 11 6 7.2482 1.0240 1.6521 12 16 8.8352 0.9560 0.7844 13 6 9.6899 -0.2028 1.8000 14 1 9.1989 -0.6310 2.6614 15 6 10.9941 -0.5652 1.4930 16 7 11.5926 -0.0430 0.4435 17 14 11.8999 -1.7942 2.5694 18 1 11.0126 -2.2300 3.6775 19 1 12.2890 -2.9733 1.7546 20 1 13.1178 -1.1570 3.1312 21 6 3.9808 2.6616 -0.7214 22 6 3.3589 1.2632 -0.7212 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.3450 1.9994 -0.5138 27 1 2.8830 1.0774 1.9564 28 1 1.2570 1.8013 1.9565 29 1 2.9878 3.5009 2.4703 30 1 2.1741 3.8629 0.9290 31 1 4.6315 4.1232 0.7216 32 1 4.2542 0.5056 2.3379 33 1 5.4535 1.3892 3.3121 34 1 3.8222 2.0634 3.0827 35 1 7.4075 1.3641 2.6753 36 1 6.7988 0.0310 1.6651 37 1 12.5042 -0.2960 0.2292 38 1 3.3152 3.3553 -1.2350 39 1 4.9416 2.6315 -1.2351 40 1 3.2111 0.9314 -1.7489 41 1 4.0241 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330817939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:58 Heat of formation + Delta-G solvation = -71.959129 kcal Electronic energy + Delta-G solvation = -21488.352304 eV Core-core repulsion = 18302.142869 eV Total energy + Delta-G solvation = -3186.209434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61360 -38.51681 -36.74490 -33.96079 -32.40403 -31.28131 -30.41805 -28.45631 -26.86614 -26.05104 -25.43652 -22.84900 -22.19296 -20.54817 -18.69364 -17.60148 -16.87176 -16.46397 -16.30828 -15.73973 -15.31529 -14.97545 -14.78094 -14.25357 -14.14895 -13.93996 -13.37683 -13.13385 -13.04533 -12.61603 -12.42399 -12.35004 -12.15069 -11.90918 -11.81248 -11.68533 -11.10699 -11.05237 -10.98794 -10.80439 -10.73092 -10.65748 -10.32012 -9.76712 -9.64652 -9.13535 -9.04783 -8.39850 -8.18520 -6.46506 -6.19171 -3.89093 2.97632 3.12682 3.23388 3.28353 3.33177 3.55476 3.66745 4.23001 4.44980 4.55263 4.81606 4.85371 5.01636 5.05681 5.08720 5.15351 5.15889 5.16655 5.24405 5.30032 5.36194 5.41795 5.42265 5.49853 5.60507 5.68952 5.71013 5.84097 5.92412 5.98099 6.03988 6.15419 6.19233 6.25453 6.33696 6.80134 7.06153 7.61221 7.63224 8.38124 8.63724 9.26367 10.88316 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.003727 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.552277 B = 7511.720266 C = 7816.181263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.092 3.908 4 C -0.169 4.169 5 C -0.122 4.122 6 C 0.152 3.848 7 N -0.616 5.616 8 C 0.071 3.929 9 C 0.535 3.465 10 O -0.514 6.514 11 C -0.150 4.150 12 S -0.062 6.062 13 C -0.533 4.533 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.135 4.135 22 C -0.111 4.111 23 H 0.083 0.917 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.267 0.733 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.824 4.259 3.097 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.035 3.965 4 C -0.206 4.206 5 C -0.160 4.160 6 C 0.049 3.951 7 N -0.353 5.353 8 C -0.072 4.072 9 C 0.323 3.677 10 O -0.389 6.389 11 C -0.300 4.300 12 S 0.164 5.836 13 C -0.682 4.682 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.744 3.256 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.174 4.174 22 C -0.149 4.149 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.997 4.968 1.515 22.602 hybrid contribution -0.198 -1.278 1.931 2.324 sum -22.195 3.691 3.446 22.762 Atomic orbital electron populations 1.22749 0.81597 1.02514 0.99638 1.87948 1.19179 1.28175 1.95033 1.22172 0.95008 0.83992 0.95346 1.22689 1.01996 0.97820 0.98116 1.21783 0.95717 0.97303 1.01161 1.20940 0.89194 0.93017 0.91984 1.47884 1.13500 1.45303 1.28606 1.22105 1.00873 0.96823 0.87425 1.20250 0.80884 0.82190 0.84422 1.90652 1.74303 1.48796 1.25142 1.23561 1.02390 1.00356 1.03724 1.85365 1.02456 1.58213 1.37527 1.22904 1.01251 1.29220 1.14806 0.90938 1.24985 0.96453 0.96577 0.95577 1.70024 1.13185 1.41769 1.25326 0.86127 0.79318 0.80238 0.79875 1.19619 1.20577 1.20598 1.21965 1.02952 0.95761 0.96672 1.21505 0.94727 0.98134 1.00522 0.89840 0.94304 0.94286 0.92644 0.88292 0.92063 0.90794 0.90555 0.90663 0.92131 0.91282 0.90293 0.89395 0.89383 0.92278 0.91476 0.88489 0.91532 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.45 10.35 -35.23 -0.36 -4.81 16 3 C 0.09 0.96 2.61 -26.73 -0.07 0.89 16 4 C -0.17 -1.52 4.88 -26.73 -0.13 -1.65 16 5 C -0.12 -1.04 4.91 -26.73 -0.13 -1.17 16 6 C 0.15 1.83 2.95 -67.93 -0.20 1.63 16 7 N -0.62 -8.64 2.25 -173.93 -0.39 -9.03 16 8 C 0.07 0.76 8.00 59.85 0.48 1.24 16 9 C 0.53 10.12 7.40 -10.99 -0.08 10.04 16 10 O -0.51 -11.49 13.91 5.55 0.08 -11.41 16 11 C -0.15 -3.09 4.78 36.01 0.17 -2.91 16 12 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 13 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 14 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 17 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.14 -1.70 5.23 -26.71 -0.14 -1.84 16 22 C -0.11 -1.40 5.42 -26.71 -0.14 -1.54 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 25 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 26 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 27 H 0.10 0.97 3.66 -51.93 -0.19 0.78 16 28 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 29 H 0.07 0.56 6.89 -51.93 -0.36 0.20 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.65 6.70 -51.93 -0.35 0.30 16 33 H 0.07 0.75 6.69 -51.93 -0.35 0.41 16 34 H 0.08 0.66 4.95 -51.93 -0.26 0.40 16 35 H 0.09 1.69 7.42 -51.92 -0.39 1.30 16 36 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.56 6.11 -51.93 -0.32 1.24 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.09 7.61 -51.93 -0.39 0.69 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -33.95 329.73 -7.48 -41.43 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.32 Total: -1.18 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 1.05 Total: -7.00 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.34 Total: -34.63 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.29 Total: -16.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.95 -7.48 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330817939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.528 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds