Wall clock time and date at job start Tue Mar 31 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00427 * 2 1 4 4 C 1.53001 * 109.46915 * 90.00012 * 3 2 1 5 5 C 1.52998 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.46616 * 299.99951 * 5 4 3 7 7 N 1.46495 * 109.47167 * 299.99937 * 6 5 4 8 8 C 1.46502 * 120.00164 * 359.19231 * 7 6 5 9 9 C 1.34778 * 119.99920 * 179.19555 * 7 6 5 10 10 O 1.21285 * 119.99929 * 359.97438 * 9 7 6 11 11 C 1.50699 * 119.99866 * 179.97438 * 9 7 6 12 12 S 1.81003 * 109.47031 * 179.97438 * 11 9 7 13 13 C 1.76200 * 100.00100 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99793 * 0.02562 * 13 12 11 15 15 C 1.38800 * 119.99859 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00395 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99694 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47435 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46990 * 119.99861 * 17 15 13 20 20 H 1.48491 * 109.47364 * 239.99878 * 17 15 13 21 21 C 1.53001 * 109.47046 * 60.00341 * 6 5 4 22 22 C 1.52993 * 109.47527 * 210.00050 * 3 2 1 23 23 H 1.08992 * 109.47225 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46944 * 299.99643 * 1 2 3 25 25 H 1.08999 * 109.47045 * 59.99323 * 1 2 3 26 26 H 1.09004 * 109.46776 * 330.00706 * 3 2 1 27 27 H 1.08998 * 109.47502 * 60.00164 * 4 3 2 28 28 H 1.09006 * 109.47498 * 300.00600 * 4 3 2 29 29 H 1.09000 * 109.47606 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47455 * 59.99818 * 5 4 3 31 31 H 1.09001 * 109.46603 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.47158 * 95.91937 * 8 7 6 33 33 H 1.09001 * 109.46990 * 215.91814 * 8 7 6 34 34 H 1.09005 * 109.47031 * 335.91794 * 8 7 6 35 35 H 1.08996 * 109.47252 * 299.99817 * 11 9 7 36 36 H 1.09006 * 109.47282 * 59.99904 * 11 9 7 37 37 H 0.96998 * 120.00375 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47382 * 59.99358 * 21 6 5 39 39 H 1.08999 * 109.46870 * 180.02562 * 21 6 5 40 40 H 1.09001 * 109.46949 * 60.00320 * 22 3 2 41 41 H 1.08995 * 109.47079 * 300.00257 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2178 1.7713 1.4425 5 6 2.8396 3.1692 1.4426 6 6 4.1883 3.1274 0.7212 7 7 5.0827 2.1950 1.4116 8 6 4.6238 1.4934 2.6130 9 6 6.3279 1.9827 0.9415 10 8 6.7077 2.5633 -0.0533 11 6 7.2482 1.0240 1.6521 12 16 8.8352 0.9560 0.7844 13 6 9.6899 -0.2028 1.8000 14 1 9.1989 -0.6310 2.6614 15 6 10.9941 -0.5652 1.4930 16 7 11.5926 -0.0430 0.4435 17 14 11.8999 -1.7942 2.5694 18 1 11.0126 -2.2300 3.6775 19 1 12.2890 -2.9733 1.7546 20 1 13.1178 -1.1570 3.1312 21 6 3.9808 2.6616 -0.7214 22 6 3.3589 1.2632 -0.7212 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.3450 1.9994 -0.5138 27 1 2.8830 1.0774 1.9564 28 1 1.2570 1.8013 1.9565 29 1 2.9878 3.5009 2.4703 30 1 2.1741 3.8629 0.9290 31 1 4.6315 4.1232 0.7216 32 1 4.2542 0.5056 2.3379 33 1 5.4535 1.3892 3.3121 34 1 3.8222 2.0634 3.0827 35 1 7.4075 1.3641 2.6753 36 1 6.7988 0.0310 1.6651 37 1 12.5042 -0.2960 0.2292 38 1 3.3152 3.3553 -1.2350 39 1 4.9416 2.6315 -1.2351 40 1 3.2111 0.9314 -1.7489 41 1 4.0241 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330817939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:58 Heat of formation + Delta-G solvation = -94.416640 kcal Electronic energy + Delta-G solvation = -21489.326134 eV Core-core repulsion = 18302.142869 eV Total energy + Delta-G solvation = -3187.183265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70608 -39.60547 -37.79763 -35.10324 -34.59022 -32.15708 -31.56791 -29.78248 -27.69222 -27.64156 -26.89694 -23.71776 -23.17618 -21.58077 -20.11775 -19.41360 -17.91260 -17.59253 -17.30522 -16.96777 -16.88109 -16.22411 -16.07327 -15.74592 -15.28008 -14.94174 -14.58498 -14.53005 -14.13163 -14.08806 -13.55487 -13.34571 -13.15096 -13.11659 -12.96285 -12.91076 -12.70848 -12.55769 -12.48620 -11.96216 -11.70074 -11.67576 -11.55471 -11.23544 -11.15929 -10.60303 -10.34451 -10.26616 -9.57752 -8.67063 -8.35013 -6.13061 1.26532 1.41054 1.46251 1.57671 1.63315 2.15112 2.27621 2.84072 2.99042 3.26671 3.58352 3.74357 3.89549 4.02344 4.13107 4.17392 4.20807 4.30588 4.36245 4.44134 4.46537 4.48405 4.55087 4.58798 4.61853 4.65551 4.85850 4.86963 4.96277 5.04327 5.11488 5.15879 5.21171 5.32100 5.34866 5.41355 5.74347 6.19535 6.34032 6.35527 7.06188 7.21234 8.74531 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.003727 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.552277 B = 7511.720266 C = 7816.181263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.111 4.111 6 C 0.145 3.855 7 N -0.601 5.601 8 C 0.062 3.938 9 C 0.531 3.469 10 O -0.559 6.559 11 C -0.124 4.124 12 S -0.151 6.151 13 C -0.546 4.546 14 H 0.081 0.919 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.273 1.273 21 C -0.132 4.132 22 C -0.109 4.109 23 H 0.090 0.910 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.451 4.087 5.517 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.038 3.962 4 C -0.203 4.203 5 C -0.148 4.148 6 C 0.043 3.957 7 N -0.335 5.335 8 C -0.080 4.080 9 C 0.318 3.682 10 O -0.437 6.437 11 C -0.275 4.275 12 S 0.076 5.924 13 C -0.693 4.693 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.198 1.198 21 C -0.170 4.170 22 C -0.147 4.147 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.683 4.798 3.966 25.456 hybrid contribution 0.471 -1.202 1.139 1.721 sum -24.212 3.597 5.104 25.004 Atomic orbital electron populations 1.22938 0.79752 1.03479 1.00854 1.87910 1.21273 1.28851 1.95255 1.22138 0.93591 0.84196 0.96293 1.22664 1.03067 0.97562 0.97012 1.21775 0.93275 0.97731 1.02017 1.21187 0.90763 0.91856 0.91941 1.47863 1.11844 1.44770 1.29031 1.22423 1.02017 0.97448 0.86063 1.20013 0.82378 0.81852 0.83961 1.90642 1.75616 1.50511 1.26958 1.23383 0.98703 1.01829 1.03578 1.85530 1.07662 1.58831 1.40372 1.23222 1.01859 1.29305 1.14950 0.90095 1.26132 0.97358 0.98635 0.97016 1.70187 1.13727 1.43482 1.27368 0.84898 0.77860 0.77176 0.77964 1.18040 1.19924 1.19793 1.21872 1.01300 0.96603 0.97207 1.21438 0.95962 0.97167 1.00094 0.89175 0.92638 0.93429 0.90821 0.89198 0.89637 0.88780 0.88144 0.91372 0.91627 0.91198 0.86748 0.87615 0.88260 0.91988 0.88876 0.92811 0.92500 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -8.77 10.35 -148.98 -1.54 -10.31 16 3 C 0.10 1.75 2.61 30.59 0.08 1.83 16 4 C -0.17 -2.34 4.88 30.59 0.15 -2.19 16 5 C -0.11 -1.43 4.91 30.60 0.15 -1.28 16 6 C 0.15 3.27 2.95 45.00 0.13 3.40 16 7 N -0.60 -16.29 2.25 -822.57 -1.85 -18.14 16 8 C 0.06 1.18 8.00 127.77 1.02 2.20 16 9 C 0.53 20.56 7.40 87.66 0.65 21.21 16 10 O -0.56 -26.33 13.91 -3.05 -0.04 -26.38 16 11 C -0.12 -5.18 4.78 71.24 0.34 -4.84 16 12 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 13 C -0.55 -31.83 9.50 67.95 0.65 -31.19 16 14 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.77 5.49 84.86 0.47 1.23 16 16 N -0.91 -56.77 13.22 21.65 0.29 -56.49 16 17 Si 1.00 44.26 29.55 68.60 2.03 46.29 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.13 -3.31 5.23 30.61 0.16 -3.15 16 22 C -0.11 -2.72 5.42 30.61 0.17 -2.56 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 0.54 7.87 -2.39 -0.02 0.53 16 25 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.07 1.09 7.79 -2.38 -0.02 1.08 16 27 H 0.09 1.46 3.66 -2.39 -0.01 1.45 16 28 H 0.09 0.87 7.87 -2.38 -0.02 0.85 16 29 H 0.09 0.92 6.89 -2.39 -0.02 0.90 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.25 6.70 -2.39 -0.02 1.24 16 33 H 0.07 1.35 6.69 -2.39 -0.02 1.34 16 34 H 0.11 1.41 4.95 -2.38 -0.01 1.40 16 35 H 0.11 4.01 7.42 -2.40 -0.02 3.99 16 36 H 0.10 3.89 8.11 -2.39 -0.02 3.87 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.84 6.11 -2.39 -0.01 1.83 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.31 7.61 -2.39 -0.02 1.29 16 Total: -1.00 -78.12 329.73 3.92 -74.20 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.02 Total: 14.37 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.19 Total: -13.75 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.56 Total: -74.63 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.58 Total: -36.68 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -78.12 3.92 -74.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330817939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.221 kcal (2) G-P(sol) polarization free energy of solvation -78.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds