Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00031 * 2 1 4 4 H 1.09009 * 112.84387 * 18.80750 * 3 2 1 5 5 C 1.53778 * 113.61651 * 247.50218 * 3 2 1 6 6 H 1.09000 * 113.61275 * 156.33433 * 5 3 2 7 7 C 1.53002 * 113.61353 * 25.42923 * 5 3 2 8 8 C 1.53781 * 87.07849 * 270.88179 * 5 3 2 9 9 H 1.09003 * 113.69034 * 220.01086 * 8 5 3 10 10 N 1.46496 * 113.61614 * 89.11738 * 8 5 3 11 11 C 1.34777 * 120.00271 * 107.49783 * 10 8 5 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47114 * 120.00091 * 19 17 15 22 22 H 1.48505 * 109.46890 * 239.99700 * 19 17 15 23 23 C 1.53777 * 113.61343 * 149.99844 * 3 2 1 24 24 C 1.52998 * 113.61939 * 334.57417 * 23 3 2 25 25 C 1.53008 * 113.61397 * 203.66567 * 23 3 2 26 26 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46786 * 299.99677 * 1 2 3 28 28 H 1.08999 * 109.47074 * 59.99659 * 1 2 3 29 29 H 1.08998 * 109.47169 * 322.50207 * 7 5 3 30 30 H 1.09001 * 109.46757 * 82.50826 * 7 5 3 31 31 H 1.09000 * 109.46718 * 202.50576 * 7 5 3 32 32 H 0.97005 * 120.00266 * 287.50366 * 10 8 5 33 33 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 34 34 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 35 35 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47300 * 157.49517 * 24 23 3 37 37 H 1.09008 * 109.46982 * 277.49536 * 24 23 3 38 38 H 1.09002 * 109.47181 * 37.48874 * 24 23 3 39 39 H 1.09001 * 109.46756 * 322.50583 * 25 23 3 40 40 H 1.08996 * 109.46698 * 82.50678 * 25 23 3 41 41 H 1.08996 * 109.47012 * 202.50776 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3137 2.0789 0.3239 5 6 2.7534 1.6490 -1.3018 6 1 2.8388 2.7199 -1.4862 7 6 2.2469 0.8734 -2.5195 8 6 4.0061 1.0332 -0.6565 9 1 4.9222 1.5866 -0.8632 10 7 4.1437 -0.4052 -0.8978 11 6 5.0852 -0.8588 -1.7489 12 8 5.8188 -0.0761 -2.3146 13 6 5.2263 -2.3384 -1.9975 14 16 6.5676 -2.6266 -3.1782 15 6 6.5116 -4.3846 -3.2819 16 1 5.7851 -4.9368 -2.7041 17 6 7.4004 -5.0598 -4.1068 18 7 8.2848 -4.3868 -4.8122 19 14 7.3405 -6.9236 -4.2172 20 1 6.2640 -7.4375 -3.3329 21 1 7.0652 -7.3278 -5.6194 22 1 8.6453 -7.4871 -3.7867 23 6 3.3755 1.3719 0.7045 24 6 3.5742 0.2824 1.7602 25 6 3.7343 2.7688 1.2155 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.9930 -0.1441 -2.2224 30 1 1.3617 1.3662 -2.9217 31 1 3.0253 0.8457 -3.2820 32 1 3.5571 -1.0313 -0.4451 33 1 4.2936 -2.7291 -2.4043 34 1 5.4537 -2.8444 -1.0592 35 1 8.9062 -4.8588 -5.3884 36 1 4.6403 0.1266 1.9254 37 1 3.1031 0.5907 2.6936 38 1 3.1206 -0.6462 1.4138 39 1 3.3886 3.5166 0.5017 40 1 3.2542 2.9374 2.1794 41 1 4.8154 2.8475 1.3293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332048706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -67.395944 kcal Electronic energy + Delta-G solvation = -21439.973623 eV Core-core repulsion = 18253.962063 eV Total energy + Delta-G solvation = -3186.011560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07881 -38.43347 -36.50675 -33.12220 -32.38674 -32.06275 -29.14741 -27.76005 -27.55220 -26.31565 -25.45569 -24.27138 -20.95856 -20.07470 -18.91912 -17.75890 -16.84621 -16.02695 -15.88174 -15.67877 -15.28580 -14.93548 -14.76716 -14.12712 -13.92248 -13.80073 -13.46237 -13.04124 -12.84741 -12.68169 -12.50395 -12.34440 -12.26190 -11.90393 -11.81020 -11.48773 -11.23942 -11.04130 -10.99311 -10.96518 -10.72162 -10.51093 -10.14858 -9.74484 -9.52373 -9.27455 -9.03524 -8.62691 -8.17031 -6.44287 -6.17718 -3.87296 3.07518 3.19648 3.24353 3.29035 3.33459 3.43769 3.82641 4.24658 4.32248 4.36627 4.64712 4.78592 4.98456 5.00960 5.12453 5.16880 5.17547 5.26623 5.31895 5.41296 5.45376 5.48200 5.56706 5.64834 5.68813 5.79656 5.81757 5.88649 5.97802 5.99845 6.02074 6.22971 6.24997 6.27746 6.42259 6.86085 7.02175 7.64180 7.93739 8.39809 8.77093 9.27863 10.89786 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003731 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.699594 B = 7503.487988 C = 7790.730753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.074 3.926 4 H 0.071 0.929 5 C -0.145 4.145 6 H 0.099 0.901 7 C -0.134 4.134 8 C 0.144 3.856 9 H 0.100 0.900 10 N -0.709 5.709 11 C 0.534 3.466 12 O -0.521 6.521 13 C -0.152 4.152 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.096 4.096 24 C -0.131 4.131 25 C -0.125 4.125 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.267 0.733 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 12.368 13.050 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.016 3.984 4 H 0.089 0.911 5 C -0.165 4.165 6 H 0.118 0.882 7 C -0.191 4.191 8 C 0.037 3.963 9 H 0.118 0.882 10 N -0.363 5.363 11 C 0.321 3.679 12 O -0.396 6.396 13 C -0.302 4.302 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.097 4.097 24 C -0.189 4.189 25 C -0.182 4.182 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.239 0.761 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.696 13.469 11.974 23.254 hybrid contribution -1.455 -2.142 0.745 2.695 sum -16.151 11.327 12.719 23.472 Atomic orbital electron populations 1.22790 0.80927 1.02787 0.99817 1.87778 1.19555 1.26368 1.94270 1.23281 0.93897 0.85033 0.96186 0.91060 1.23505 0.97288 1.00367 0.95360 0.88243 1.21451 1.00241 1.00720 0.96697 1.21797 0.98027 0.82955 0.93513 0.88192 1.45615 1.37069 1.06557 1.47020 1.20272 0.79184 0.90521 0.77974 1.90682 1.43204 1.57679 1.48020 1.23517 1.06663 0.94177 1.05894 1.85368 1.38135 1.07694 1.52189 1.22923 1.22244 0.91602 1.31439 0.90920 1.24981 0.94574 0.99343 0.94682 1.70032 1.18508 1.35811 1.26011 0.86130 0.78111 0.83288 0.78044 1.19623 1.20597 1.20594 1.22484 0.94910 0.97060 0.95279 1.21529 1.01825 0.98379 0.97132 1.21542 1.02310 0.93512 1.00854 0.89552 0.94206 0.94006 0.91446 0.93614 0.92213 0.76050 0.89341 0.89376 0.92299 0.92304 0.92857 0.91364 0.92112 0.92031 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.36 -3.55 6.47 -35.23 -0.23 -3.78 16 3 C 0.07 0.69 3.64 -25.92 -0.09 0.60 16 4 H 0.07 0.56 7.83 -51.92 -0.41 0.15 16 5 C -0.15 -1.58 3.97 -89.81 -0.36 -1.94 16 6 H 0.10 0.95 7.65 -51.93 -0.40 0.55 16 7 C -0.13 -1.66 8.97 37.16 0.33 -1.32 16 8 C 0.14 1.83 3.64 -67.12 -0.24 1.59 16 9 H 0.10 1.47 7.42 -51.93 -0.39 1.08 16 10 N -0.71 -10.37 3.55 -53.02 -0.19 -10.56 16 11 C 0.53 10.38 7.85 -10.98 -0.09 10.29 16 12 O -0.52 -12.10 15.46 5.56 0.09 -12.02 16 13 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.47 9.50 30.94 0.29 -15.17 16 16 H 0.07 2.00 7.80 -52.48 -0.41 1.60 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 19 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.10 -0.92 1.34 -153.69 -0.21 -1.13 16 24 C -0.13 -1.28 8.44 37.16 0.31 -0.96 16 25 C -0.12 -0.96 9.07 37.16 0.34 -0.62 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 5.30 6.10 -40.82 -0.25 5.05 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.07 0.71 5.68 -51.93 -0.29 0.41 16 39 H 0.06 0.42 7.34 -51.93 -0.38 0.04 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -33.75 343.35 -6.80 -40.55 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.65 Total: 1.90 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 1.51 Total: -8.28 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.55 Total: -36.32 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.14 Total: -15.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.75 -6.80 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332048706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.850 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds