Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00031 * 2 1 4 4 H 1.09009 * 112.84387 * 18.80750 * 3 2 1 5 5 C 1.53778 * 113.61651 * 247.50218 * 3 2 1 6 6 H 1.09000 * 113.61275 * 156.33433 * 5 3 2 7 7 C 1.53002 * 113.61353 * 25.42923 * 5 3 2 8 8 C 1.53781 * 87.07849 * 270.88179 * 5 3 2 9 9 H 1.09003 * 113.69034 * 220.01086 * 8 5 3 10 10 N 1.46496 * 113.61614 * 89.11738 * 8 5 3 11 11 C 1.34777 * 120.00271 * 107.49783 * 10 8 5 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47114 * 120.00091 * 19 17 15 22 22 H 1.48505 * 109.46890 * 239.99700 * 19 17 15 23 23 C 1.53777 * 113.61343 * 149.99844 * 3 2 1 24 24 C 1.52998 * 113.61939 * 334.57417 * 23 3 2 25 25 C 1.53008 * 113.61397 * 203.66567 * 23 3 2 26 26 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46786 * 299.99677 * 1 2 3 28 28 H 1.08999 * 109.47074 * 59.99659 * 1 2 3 29 29 H 1.08998 * 109.47169 * 322.50207 * 7 5 3 30 30 H 1.09001 * 109.46757 * 82.50826 * 7 5 3 31 31 H 1.09000 * 109.46718 * 202.50576 * 7 5 3 32 32 H 0.97005 * 120.00266 * 287.50366 * 10 8 5 33 33 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 34 34 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 35 35 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47300 * 157.49517 * 24 23 3 37 37 H 1.09008 * 109.46982 * 277.49536 * 24 23 3 38 38 H 1.09002 * 109.47181 * 37.48874 * 24 23 3 39 39 H 1.09001 * 109.46756 * 322.50583 * 25 23 3 40 40 H 1.08996 * 109.46698 * 82.50678 * 25 23 3 41 41 H 1.08996 * 109.47012 * 202.50776 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3137 2.0789 0.3239 5 6 2.7534 1.6490 -1.3018 6 1 2.8388 2.7199 -1.4862 7 6 2.2469 0.8734 -2.5195 8 6 4.0061 1.0332 -0.6565 9 1 4.9222 1.5866 -0.8632 10 7 4.1437 -0.4052 -0.8978 11 6 5.0852 -0.8588 -1.7489 12 8 5.8188 -0.0761 -2.3146 13 6 5.2263 -2.3384 -1.9975 14 16 6.5676 -2.6266 -3.1782 15 6 6.5116 -4.3846 -3.2819 16 1 5.7851 -4.9368 -2.7041 17 6 7.4004 -5.0598 -4.1068 18 7 8.2848 -4.3868 -4.8122 19 14 7.3405 -6.9236 -4.2172 20 1 6.2640 -7.4375 -3.3329 21 1 7.0652 -7.3278 -5.6194 22 1 8.6453 -7.4871 -3.7867 23 6 3.3755 1.3719 0.7045 24 6 3.5742 0.2824 1.7602 25 6 3.7343 2.7688 1.2155 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.9930 -0.1441 -2.2224 30 1 1.3617 1.3662 -2.9217 31 1 3.0253 0.8457 -3.2820 32 1 3.5571 -1.0313 -0.4451 33 1 4.2936 -2.7291 -2.4043 34 1 5.4537 -2.8444 -1.0592 35 1 8.9062 -4.8588 -5.3884 36 1 4.6403 0.1266 1.9254 37 1 3.1031 0.5907 2.6936 38 1 3.1206 -0.6462 1.4138 39 1 3.3886 3.5166 0.5017 40 1 3.2542 2.9374 2.1794 41 1 4.8154 2.8475 1.3293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332048706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -89.390108 kcal Electronic energy + Delta-G solvation = -21440.927361 eV Core-core repulsion = 18253.962063 eV Total energy + Delta-G solvation = -3186.965298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03556 -39.87268 -37.29217 -34.60045 -34.42765 -32.98378 -30.76418 -28.41117 -28.39435 -27.70641 -27.01657 -25.22447 -22.07364 -21.30418 -20.09702 -19.52532 -18.06336 -17.19065 -16.97082 -16.88036 -16.56878 -16.37059 -16.07136 -15.82073 -15.13776 -14.80263 -14.52725 -14.45559 -14.07425 -13.67220 -13.55723 -13.46498 -13.16691 -13.09972 -13.00457 -12.91356 -12.62596 -12.52662 -12.27923 -12.12883 -11.78127 -11.69994 -11.41228 -11.15932 -11.02641 -10.85925 -10.28100 -10.27033 -9.88077 -8.66783 -8.34944 -6.12998 1.26704 1.41223 1.46589 1.58373 1.63352 2.24617 2.28687 2.74102 2.99172 3.31955 3.44960 3.57728 3.73498 3.99660 4.02710 4.25199 4.29084 4.37585 4.43047 4.48470 4.57019 4.61350 4.67254 4.72669 4.76258 4.83603 4.93497 4.94569 5.02239 5.04751 5.13253 5.20983 5.36960 5.41664 5.43834 5.47006 5.66312 6.19864 6.34454 6.59756 7.06319 7.30145 8.74670 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.003731 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.699594 B = 7503.487988 C = 7790.730753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.087 3.913 4 H 0.099 0.901 5 C -0.144 4.144 6 H 0.117 0.883 7 C -0.130 4.130 8 C 0.121 3.879 9 H 0.075 0.925 10 N -0.684 5.684 11 C 0.536 3.464 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.146 6.146 15 C -0.547 4.547 16 H 0.081 0.919 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.084 4.084 24 C -0.131 4.131 25 C -0.124 4.124 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.413 0.587 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.271 0.729 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 12.093 14.952 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C 0.028 3.972 4 H 0.117 0.883 5 C -0.163 4.163 6 H 0.135 0.865 7 C -0.187 4.187 8 C 0.015 3.985 9 H 0.093 0.907 10 N -0.337 5.337 11 C 0.322 3.678 12 O -0.445 6.445 13 C -0.280 4.280 14 S 0.081 5.919 15 C -0.695 4.695 16 H 0.099 0.901 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.085 4.085 24 C -0.188 4.188 25 C -0.181 4.181 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.252 0.748 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.224 13.208 13.918 25.784 hybrid contribution -0.762 -1.973 0.206 2.125 sum -17.986 11.234 14.124 25.480 Atomic orbital electron populations 1.22945 0.79522 1.03547 1.00749 1.87755 1.21136 1.26711 1.94225 1.23201 0.94080 0.85675 0.94225 0.88317 1.23571 0.96238 1.00931 0.95599 0.86530 1.21389 0.99920 1.00880 0.96515 1.22121 0.98160 0.81127 0.97059 0.90700 1.45361 1.35284 1.08035 1.44984 1.20003 0.79788 0.89496 0.78505 1.90667 1.45324 1.58332 1.50192 1.23351 1.04248 0.95892 1.04473 1.85530 1.42255 1.08766 1.55385 1.23240 1.22756 0.91586 1.31911 0.90089 1.26124 0.93794 1.05245 0.93881 1.70191 1.19451 1.38291 1.26855 0.84898 0.78665 0.75857 0.78467 1.18114 1.19823 1.19807 1.22481 0.94502 0.98165 0.93353 1.21526 1.01121 0.98168 0.98014 1.21573 1.02123 0.92295 1.02103 0.89032 0.92566 0.93711 0.92265 0.91639 0.95654 0.74833 0.87783 0.87634 0.91964 0.93565 0.90907 0.92047 0.91021 0.90016 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 113.37 1.23 1.56 16 2 O -0.38 -6.43 6.47 -148.98 -0.96 -7.39 16 3 C 0.09 1.34 3.64 31.12 0.11 1.45 16 4 H 0.10 1.07 7.83 -2.38 -0.02 1.05 16 5 C -0.14 -2.90 3.97 -10.27 -0.04 -2.94 16 6 H 0.12 1.97 7.65 -2.39 -0.02 1.96 16 7 C -0.13 -3.12 8.97 71.98 0.65 -2.47 16 8 C 0.12 3.04 3.64 45.52 0.17 3.20 16 9 H 0.07 2.27 7.42 -2.39 -0.02 2.25 16 10 N -0.68 -19.91 3.55 -440.04 -1.56 -21.47 16 11 C 0.54 21.34 7.85 87.66 0.69 22.03 16 12 O -0.57 -27.59 15.46 -3.02 -0.05 -27.63 16 13 C -0.13 -5.45 6.16 71.24 0.44 -5.02 16 14 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 15 C -0.55 -32.07 9.50 67.95 0.65 -31.42 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.83 5.49 84.86 0.47 1.29 16 18 N -0.91 -56.85 13.22 21.65 0.29 -56.57 16 19 Si 1.00 44.36 29.55 68.60 2.03 46.39 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C -0.08 -1.43 1.34 -51.65 -0.07 -1.50 16 24 C -0.13 -2.26 8.44 71.98 0.61 -1.66 16 25 C -0.12 -1.57 9.07 71.98 0.65 -0.92 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 1.50 6.59 -2.39 -0.02 1.48 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.41 10.45 6.10 -92.70 -0.57 9.88 16 33 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 34 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 35 H 0.27 15.63 8.31 -92.70 -0.77 14.85 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 1.14 5.68 -2.39 -0.01 1.13 16 39 H 0.07 0.77 7.34 -2.39 -0.02 0.75 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.99 343.35 4.57 -71.42 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.45 Total: 21.22 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 5.54 Total: -16.40 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.28 Total: -78.04 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.01 Total: -35.02 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -75.99 4.57 -71.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332048706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.970 kcal (2) G-P(sol) polarization free energy of solvation -75.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds