Wall clock time and date at job start Tue Mar 31 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.70383 * 2 1 4 4 C 1.53192 * 109.58543 * 239.63973 * 2 1 3 5 5 C 1.53039 * 109.31328 * 185.57785 * 4 2 1 6 6 C 1.53045 * 109.53639 * 61.36755 * 5 4 2 7 7 C 1.53622 * 109.24115 * 298.51034 * 6 5 4 8 8 N 1.46928 * 109.58370 * 120.35478 * 2 1 3 9 9 S 1.65602 * 120.63274 * 353.37024 * 8 2 1 10 10 O 1.42093 * 104.27591 * 327.24429 * 9 8 2 11 11 O 1.42097 * 104.27657 * 199.38590 * 9 8 2 12 12 C 1.81400 * 104.44877 * 83.31378 * 9 8 2 13 13 C 1.52997 * 109.47227 * 173.12513 * 12 9 8 14 14 C 1.50706 * 115.56115 * 39.03844 * 13 12 9 15 15 H 1.07993 * 119.99991 * 264.12658 * 14 13 12 16 16 C 1.37879 * 119.99624 * 84.12618 * 14 13 12 17 17 N 1.31508 * 120.00442 * 2.42898 * 16 14 13 18 18 Si 1.86799 * 119.99446 * 182.42333 * 16 14 13 19 19 H 1.48498 * 109.47336 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46708 * 120.00459 * 18 16 14 21 21 H 1.48495 * 109.47250 * 239.99968 * 18 16 14 22 22 C 1.53000 * 117.49843 * 184.72702 * 13 12 9 23 23 C 1.53002 * 60.03091 * 107.50183 * 22 13 12 24 24 H 1.08999 * 109.47046 * 315.50843 * 1 2 3 25 25 H 1.09001 * 109.46650 * 75.50971 * 1 2 3 26 26 H 1.09003 * 109.47271 * 195.50592 * 1 2 3 27 27 H 1.08994 * 109.50272 * 305.53093 * 4 2 1 28 28 H 1.09002 * 109.49737 * 65.59779 * 4 2 1 29 29 H 1.09000 * 109.46585 * 181.38721 * 5 4 2 30 30 H 1.08996 * 109.46233 * 301.34857 * 5 4 2 31 31 H 1.09003 * 109.49953 * 58.58606 * 6 5 4 32 32 H 1.08994 * 109.49777 * 178.65216 * 6 5 4 33 33 H 1.08998 * 109.74620 * 295.12110 * 7 6 5 34 34 H 1.09001 * 109.66474 * 174.54711 * 7 6 5 35 35 H 1.09008 * 109.47092 * 53.12175 * 12 9 8 36 36 H 1.09002 * 109.47273 * 293.12779 * 12 9 8 37 37 H 0.97002 * 120.00606 * 185.01561 * 17 16 14 38 38 H 1.08994 * 117.50234 * 0.02562 * 22 13 12 39 39 H 1.09003 * 117.49805 * 215.00150 * 22 13 12 40 40 H 1.09006 * 117.49828 * 107.47760 * 23 22 13 41 41 H 1.09004 * 117.49832 * 252.47510 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8481 -1.1701 6 6 3.9569 -1.6658 0.0636 7 6 3.4657 -0.9420 1.3264 8 7 2.0225 -0.6996 1.1945 9 16 0.9719 -1.1991 2.3730 10 8 -0.0556 -0.2176 2.3653 11 8 1.7933 -1.3908 3.5165 12 6 0.3384 -2.7885 1.7706 13 6 -0.5201 -3.4401 2.8565 14 6 -1.3967 -2.5002 3.6436 15 1 -1.0578 -2.1136 4.5933 16 6 -2.6313 -2.1339 3.1511 17 7 -3.0643 -2.6417 2.0179 18 14 -3.6890 -0.9164 4.0936 19 1 -2.9791 -0.4960 5.3283 20 1 -3.9506 0.2732 3.2441 21 1 -4.9778 -1.5581 4.4572 22 6 -1.0586 -4.8458 2.5827 23 6 0.0692 -4.6434 3.5967 24 1 -0.3633 0.7331 0.7202 25 1 -0.3633 0.2571 -0.9950 26 1 -0.3634 -0.9903 0.2747 27 1 1.6030 -1.7254 -1.2913 28 1 1.7656 -0.1673 -2.1369 29 1 3.9379 -1.3450 -2.0668 30 1 4.0062 0.1472 -1.0993 31 1 3.4983 -2.6530 0.0054 32 1 5.0411 -1.7702 0.1035 33 1 3.9877 0.0089 1.4324 34 1 3.6532 -1.5637 2.2019 35 1 1.1745 -3.4439 1.5264 36 1 -0.2667 -2.6241 0.8789 37 1 -3.8991 -2.3302 1.6343 38 1 -0.8009 -5.3066 1.6292 39 1 -2.0470 -5.0907 2.9716 40 1 -0.1773 -4.7548 4.6526 41 1 1.0685 -4.9713 3.3101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335996122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:17 Heat of formation + Delta-G solvation = -49.703246 kcal Electronic energy + Delta-G solvation = -23029.471299 eV Core-core repulsion = 19844.226952 eV Total energy + Delta-G solvation = -3185.244347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.58122 -36.69883 -36.34482 -34.90186 -32.62825 -32.03063 -31.89111 -28.25202 -26.88400 -25.49019 -23.87023 -21.97197 -21.15668 -20.42775 -19.26080 -18.08279 -16.84773 -16.28877 -15.84133 -15.06590 -14.63087 -14.43097 -14.22793 -14.13733 -13.94925 -13.75691 -13.25765 -13.05294 -12.55422 -12.20831 -11.88825 -11.80332 -11.51495 -11.33437 -11.07789 -11.03134 -11.00091 -10.85133 -10.80258 -10.54989 -10.53332 -10.46676 -10.30866 -10.02964 -9.73584 -9.58128 -9.02396 -8.62322 -8.47507 -8.04591 -6.14230 -4.29766 1.20954 3.33578 3.42620 3.48548 3.51544 4.42687 4.71032 4.75198 4.83659 4.95163 5.05691 5.14978 5.16711 5.26775 5.34558 5.44171 5.52197 5.66825 5.73847 5.81920 5.86268 5.90114 6.00526 6.02135 6.04495 6.09952 6.26032 6.31850 6.37248 6.47309 6.53151 6.67232 6.72957 6.92117 7.01794 7.07676 7.22074 7.45774 7.79741 8.20999 8.80217 9.48056 10.93113 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.007317 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.868322 B = 3825.931937 C = 4232.181440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.071 0.929 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.137 4.137 7 C 0.119 3.881 8 N -1.012 6.012 9 S 2.626 3.374 10 O -0.940 6.940 11 O -0.977 6.977 12 C -0.563 4.563 13 C 0.048 3.952 14 C -0.540 4.540 15 H 0.069 0.931 16 C 0.098 3.902 17 N -0.867 5.867 18 Si 0.892 3.108 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.285 1.285 22 C -0.140 4.140 23 C -0.206 4.206 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.263 0.737 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.950 2.299 -7.997 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.172 4.172 5 C -0.153 4.153 6 C -0.176 4.176 7 C -0.007 4.007 8 N -0.848 5.848 9 S 2.724 3.276 10 O -0.930 6.930 11 O -0.967 6.967 12 C -0.695 4.695 13 C 0.046 3.954 14 C -0.578 4.578 15 H 0.087 0.913 16 C -0.109 4.109 17 N -0.501 5.501 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.211 1.211 22 C -0.179 4.179 23 C -0.243 4.243 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.603 2.768 -7.303 13.169 hybrid contribution -0.591 -0.034 -0.325 0.675 sum 10.012 2.734 -7.628 12.881 Atomic orbital electron populations 1.22785 0.92769 1.05682 1.03642 1.20868 0.94611 0.95313 0.84024 0.91142 1.22034 0.95854 1.01615 0.97721 1.21459 0.96012 1.00211 0.97624 1.22020 1.00671 0.99587 0.95289 1.21418 0.80654 1.00410 0.98202 1.58400 1.17116 1.72360 1.36966 1.04648 0.72869 0.77274 0.72764 1.93530 1.57628 1.56398 1.85423 1.93438 1.68326 1.87720 1.47241 1.30159 1.08270 1.20425 1.10641 1.18208 0.95890 0.87886 0.93378 1.20660 1.01606 1.28930 1.06560 0.91300 1.24881 0.96671 0.94529 0.94843 1.69992 1.21660 1.39936 1.18525 0.86519 0.79635 0.81301 0.80689 1.19232 1.20140 1.21077 1.22508 0.96927 1.01283 0.97166 1.23132 0.96487 1.06829 0.97894 0.87563 0.91736 0.91587 0.91355 0.91178 0.92146 0.92024 0.91524 0.91196 0.91733 0.89044 0.88754 0.85596 0.92684 0.91818 0.89415 0.89758 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 7.70 37.16 0.29 -2.90 16 2 C 0.16 2.29 3.46 -67.59 -0.23 2.06 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -1.56 5.32 -26.61 -0.14 -1.70 16 5 C -0.12 -1.18 5.88 -26.69 -0.16 -1.33 16 6 C -0.14 -1.50 6.10 -26.39 -0.16 -1.66 16 7 C 0.12 1.63 6.38 -3.48 -0.02 1.61 16 8 N -1.01 -16.70 3.21 -106.22 -0.34 -17.04 16 9 S 2.63 56.50 3.92 -107.50 -0.42 56.08 16 10 O -0.94 -22.71 13.01 -57.54 -0.75 -23.46 16 11 O -0.98 -23.14 16.50 -57.54 -0.95 -24.09 16 12 C -0.56 -12.03 6.00 37.16 0.22 -11.80 16 13 C 0.05 1.19 1.71 -155.62 -0.27 0.93 16 14 C -0.54 -14.92 6.90 -34.44 -0.24 -15.16 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.10 2.69 5.43 -17.82 -0.10 2.60 16 17 N -0.87 -23.84 12.74 55.43 0.71 -23.13 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.14 -3.24 9.28 -26.73 -0.25 -3.49 16 23 C -0.21 -4.57 9.88 -26.69 -0.26 -4.83 16 24 H 0.11 2.01 6.25 -51.93 -0.32 1.68 16 25 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 26 H 0.07 1.24 4.55 -51.93 -0.24 1.00 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.32 6.89 -51.93 -0.36 0.96 16 35 H 0.09 1.72 7.94 -51.92 -0.41 1.31 16 36 H 0.13 2.70 6.21 -51.92 -0.32 2.37 16 37 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 40 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -31.24 327.95 -9.84 -41.08 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.69 Total: 4.23 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: -1.32 Total: -35.69 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.37 Total: -40.18 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.70 Total: -47.55 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 56.50 SS G_CDS: -0.42 Total: 56.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.24 -9.84 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335996122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.625 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds