Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.70383 * 2 1 4 4 C 1.53192 * 109.58543 * 239.63973 * 2 1 3 5 5 C 1.53039 * 109.31328 * 185.57785 * 4 2 1 6 6 C 1.53045 * 109.53639 * 61.36755 * 5 4 2 7 7 C 1.53622 * 109.24115 * 298.51034 * 6 5 4 8 8 N 1.46928 * 109.58370 * 120.35478 * 2 1 3 9 9 S 1.65602 * 120.63274 * 353.37024 * 8 2 1 10 10 O 1.42093 * 104.27591 * 327.24429 * 9 8 2 11 11 O 1.42097 * 104.27657 * 199.38590 * 9 8 2 12 12 C 1.81400 * 104.44877 * 83.31378 * 9 8 2 13 13 C 1.52997 * 109.47227 * 173.12513 * 12 9 8 14 14 C 1.50706 * 115.56115 * 39.03844 * 13 12 9 15 15 H 1.07993 * 119.99991 * 264.12658 * 14 13 12 16 16 C 1.37879 * 119.99624 * 84.12618 * 14 13 12 17 17 N 1.31508 * 120.00442 * 2.42898 * 16 14 13 18 18 Si 1.86799 * 119.99446 * 182.42333 * 16 14 13 19 19 H 1.48498 * 109.47336 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46708 * 120.00459 * 18 16 14 21 21 H 1.48495 * 109.47250 * 239.99968 * 18 16 14 22 22 C 1.53000 * 117.49843 * 184.72702 * 13 12 9 23 23 C 1.53002 * 60.03091 * 107.50183 * 22 13 12 24 24 H 1.08999 * 109.47046 * 315.50843 * 1 2 3 25 25 H 1.09001 * 109.46650 * 75.50971 * 1 2 3 26 26 H 1.09003 * 109.47271 * 195.50592 * 1 2 3 27 27 H 1.08994 * 109.50272 * 305.53093 * 4 2 1 28 28 H 1.09002 * 109.49737 * 65.59779 * 4 2 1 29 29 H 1.09000 * 109.46585 * 181.38721 * 5 4 2 30 30 H 1.08996 * 109.46233 * 301.34857 * 5 4 2 31 31 H 1.09003 * 109.49953 * 58.58606 * 6 5 4 32 32 H 1.08994 * 109.49777 * 178.65216 * 6 5 4 33 33 H 1.08998 * 109.74620 * 295.12110 * 7 6 5 34 34 H 1.09001 * 109.66474 * 174.54711 * 7 6 5 35 35 H 1.09008 * 109.47092 * 53.12175 * 12 9 8 36 36 H 1.09002 * 109.47273 * 293.12779 * 12 9 8 37 37 H 0.97002 * 120.00606 * 185.01561 * 17 16 14 38 38 H 1.08994 * 117.50234 * 0.02562 * 22 13 12 39 39 H 1.09003 * 117.49805 * 215.00150 * 22 13 12 40 40 H 1.09006 * 117.49828 * 107.47760 * 23 22 13 41 41 H 1.09004 * 117.49832 * 252.47510 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8481 -1.1701 6 6 3.9569 -1.6658 0.0636 7 6 3.4657 -0.9420 1.3264 8 7 2.0225 -0.6996 1.1945 9 16 0.9719 -1.1991 2.3730 10 8 -0.0556 -0.2176 2.3653 11 8 1.7933 -1.3908 3.5165 12 6 0.3384 -2.7885 1.7706 13 6 -0.5201 -3.4401 2.8565 14 6 -1.3967 -2.5002 3.6436 15 1 -1.0578 -2.1136 4.5933 16 6 -2.6313 -2.1339 3.1511 17 7 -3.0643 -2.6417 2.0179 18 14 -3.6890 -0.9164 4.0936 19 1 -2.9791 -0.4960 5.3283 20 1 -3.9506 0.2732 3.2441 21 1 -4.9778 -1.5581 4.4572 22 6 -1.0586 -4.8458 2.5827 23 6 0.0692 -4.6434 3.5967 24 1 -0.3633 0.7331 0.7202 25 1 -0.3633 0.2571 -0.9950 26 1 -0.3634 -0.9903 0.2747 27 1 1.6030 -1.7254 -1.2913 28 1 1.7656 -0.1673 -2.1369 29 1 3.9379 -1.3450 -2.0668 30 1 4.0062 0.1472 -1.0993 31 1 3.4983 -2.6530 0.0054 32 1 5.0411 -1.7702 0.1035 33 1 3.9877 0.0089 1.4324 34 1 3.6532 -1.5637 2.2019 35 1 1.1745 -3.4439 1.5264 36 1 -0.2667 -2.6241 0.8789 37 1 -3.8991 -2.3302 1.6343 38 1 -0.8009 -5.3066 1.6292 39 1 -2.0470 -5.0907 2.9716 40 1 -0.1773 -4.7548 4.6526 41 1 1.0685 -4.9713 3.3101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335996122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -69.362353 kcal Electronic energy + Delta-G solvation = -23030.323782 eV Core-core repulsion = 19844.226952 eV Total energy + Delta-G solvation = -3186.096830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.66708 -38.55019 -38.06117 -36.65689 -34.11400 -33.68291 -33.01244 -29.96112 -28.03816 -27.54655 -24.92561 -23.11803 -22.95685 -21.65127 -20.94517 -19.59807 -18.56495 -17.89268 -17.34747 -16.86641 -16.54770 -15.69343 -15.56831 -15.38475 -15.14696 -15.12413 -14.85212 -14.34742 -14.16461 -13.76246 -13.45626 -13.34552 -12.99590 -12.93901 -12.75342 -12.73359 -12.59572 -12.46669 -12.23317 -12.08999 -11.90070 -11.79858 -11.63865 -11.52138 -11.42046 -11.04945 -10.94212 -10.46776 -10.03372 -9.70455 -8.24116 -6.42381 -0.42452 1.32516 1.38919 1.46793 2.06756 2.38452 3.06429 3.12176 3.30901 3.54143 3.61075 3.93068 4.01684 4.06651 4.13766 4.31296 4.33973 4.36928 4.50319 4.57066 4.58256 4.74047 4.77342 4.80661 4.90954 4.93735 4.96207 5.06516 5.13590 5.19149 5.25923 5.30244 5.35525 5.38939 5.55660 5.61194 5.62117 5.67616 5.87039 6.19855 6.67348 7.35866 8.82957 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.007317 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.868322 B = 3825.931937 C = 4232.181440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.154 3.846 3 H 0.087 0.913 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.133 4.133 7 C 0.107 3.893 8 N -1.006 6.006 9 S 2.630 3.370 10 O -0.977 6.977 11 O -1.007 7.007 12 C -0.556 4.556 13 C 0.014 3.986 14 C -0.555 4.555 15 H 0.045 0.955 16 C 0.064 3.936 17 N -0.881 5.881 18 Si 0.924 3.076 19 H -0.275 1.275 20 H -0.275 1.275 21 H -0.268 1.268 22 C -0.137 4.137 23 C -0.194 4.194 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.266 0.734 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.822 2.128 -9.996 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.049 3.951 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.150 4.150 6 C -0.172 4.172 7 C -0.018 4.018 8 N -0.845 5.845 9 S 2.729 3.271 10 O -0.967 6.967 11 O -0.998 6.998 12 C -0.688 4.688 13 C 0.012 3.988 14 C -0.593 4.593 15 H 0.063 0.937 16 C -0.141 4.141 17 N -0.516 5.516 18 Si 0.749 3.251 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.193 1.193 22 C -0.175 4.175 23 C -0.231 4.231 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.466 2.590 -9.288 15.760 hybrid contribution -1.127 0.045 0.294 1.166 sum 11.339 2.635 -8.994 14.711 Atomic orbital electron populations 1.22731 0.94794 1.03238 1.04274 1.21089 0.93047 0.96503 0.84435 0.89549 1.22038 0.97134 1.01069 0.96682 1.21479 0.94571 1.00994 0.97976 1.22037 1.02203 0.99016 0.93976 1.21747 0.78803 1.01622 0.99584 1.58027 1.17722 1.72152 1.36634 1.04184 0.72653 0.77121 0.73128 1.93498 1.59397 1.57517 1.86288 1.93387 1.68838 1.88068 1.49473 1.30030 1.08736 1.20832 1.09212 1.18351 0.97217 0.88269 0.94962 1.20755 1.02515 1.29831 1.06152 0.93685 1.25344 0.97480 0.95651 0.95604 1.70012 1.22037 1.40500 1.19003 0.86028 0.79243 0.80194 0.79615 1.20013 1.20047 1.19333 1.22431 0.96339 1.00407 0.98363 1.23215 0.97663 1.04694 0.97483 0.90492 0.88977 0.94065 0.92105 0.88910 0.90004 0.90887 0.91929 0.88528 0.90085 0.90233 0.85589 0.85947 0.92418 0.89740 0.91609 0.90275 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.35 7.70 71.98 0.55 -5.80 16 2 C 0.15 4.19 3.46 44.98 0.16 4.35 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.13 -2.61 5.32 30.67 0.16 -2.45 16 5 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 6 C -0.13 -2.43 6.10 30.82 0.19 -2.25 16 7 C 0.11 2.71 6.38 86.51 0.55 3.26 16 8 N -1.01 -31.98 3.21 -489.98 -1.57 -33.55 16 9 S 2.63 114.24 3.92 -56.49 -0.22 114.02 16 10 O -0.98 -48.83 13.01 -127.65 -1.66 -50.49 16 11 O -1.01 -48.42 16.50 -127.65 -2.11 -50.52 16 12 C -0.56 -23.49 6.00 71.98 0.43 -23.06 16 13 C 0.01 0.69 1.71 -52.90 -0.09 0.60 16 14 C -0.55 -31.46 6.90 25.60 0.18 -31.28 16 15 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 16 C 0.06 3.62 5.43 84.66 0.46 4.08 16 17 N -0.88 -49.04 12.74 21.45 0.27 -48.76 16 18 Si 0.92 45.85 29.54 68.60 2.03 47.88 16 19 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 C -0.14 -6.25 9.28 30.60 0.28 -5.96 16 23 C -0.19 -8.38 9.88 30.62 0.30 -8.08 16 24 H 0.08 2.99 6.25 -2.39 -0.01 2.98 16 25 H 0.09 2.42 8.06 -2.39 -0.02 2.40 16 26 H 0.04 1.56 4.55 -2.39 -0.01 1.55 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.20 6.89 -2.39 -0.02 2.18 16 35 H 0.13 4.36 7.94 -2.39 -0.02 4.34 16 36 H 0.12 5.25 6.21 -2.39 -0.01 5.23 16 37 H 0.27 14.09 8.32 -92.71 -0.77 13.32 16 38 H 0.08 3.45 8.14 -2.39 -0.02 3.44 16 39 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 41 H 0.10 3.63 8.08 -2.39 -0.02 3.61 16 Total: -1.00 -69.02 327.95 1.09 -67.92 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.00 Total: 21.71 kcal Atomic # 6 Polarization: -71.56 SS G_CDS: 3.36 Total: -68.21 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.30 Total: -82.31 kcal Atomic # 8 Polarization: -97.24 SS G_CDS: -3.77 Total: -101.01 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: 114.24 SS G_CDS: -0.22 Total: 114.02 kcal Total: -69.02 1.09 -67.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335996122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.439 kcal (2) G-P(sol) polarization free energy of solvation -69.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds