Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.64583 * 2 1 4 4 C 1.54326 * 110.71939 * 123.34071 * 2 1 3 5 5 N 1.47284 * 107.31132 * 96.17549 * 4 2 1 6 6 S 1.65599 * 125.79482 * 178.92565 * 5 4 2 7 7 O 1.42099 * 104.27535 * 26.07007 * 6 5 4 8 8 O 1.42100 * 104.27580 * 153.93132 * 6 5 4 9 9 C 1.81408 * 104.44674 * 269.99983 * 6 5 4 10 10 C 1.53002 * 109.46725 * 173.98445 * 9 6 5 11 11 C 1.50703 * 115.55061 * 65.20677 * 10 9 6 12 12 H 1.08004 * 119.99340 * 264.78365 * 11 10 9 13 13 C 1.37871 * 120.00437 * 84.77598 * 11 10 9 14 14 N 1.31515 * 119.99853 * 352.22862 * 13 11 10 15 15 Si 1.86799 * 120.00302 * 172.22670 * 13 11 10 16 16 H 1.48504 * 109.47160 * 59.99967 * 15 13 11 17 17 H 1.48492 * 109.47249 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46733 * 300.00341 * 15 13 11 19 19 C 1.52998 * 117.50406 * 279.53222 * 10 9 6 20 20 C 1.52997 * 117.50010 * 210.87057 * 10 9 6 21 21 C 1.47426 * 108.55371 * 358.92823 * 5 4 2 22 22 C 1.54903 * 104.93388 * 24.15447 * 21 5 4 23 23 H 1.08997 * 111.00700 * 81.04409 * 22 21 5 24 24 C 1.52997 * 111.00805 * 204.86278 * 22 21 5 25 25 H 1.09000 * 109.47821 * 183.14262 * 1 2 3 26 26 H 1.09000 * 109.47177 * 303.14298 * 1 2 3 27 27 H 1.09007 * 109.47216 * 63.13664 * 1 2 3 28 28 H 1.08999 * 109.88331 * 215.58781 * 4 2 1 29 29 H 1.09005 * 109.88057 * 336.59095 * 4 2 1 30 30 H 1.08992 * 109.47409 * 293.98519 * 9 6 5 31 31 H 1.08995 * 109.47099 * 53.99181 * 9 6 5 32 32 H 0.97002 * 119.99681 * 185.02325 * 14 13 11 33 33 H 1.09008 * 117.49472 * 359.97438 * 19 10 9 34 34 H 1.08992 * 117.50139 * 145.02149 * 19 10 9 35 35 H 1.09003 * 117.50191 * 214.98309 * 20 10 9 36 36 H 1.09006 * 117.49844 * 0.02562 * 20 10 9 37 37 H 1.08996 * 110.36617 * 265.25297 * 21 5 4 38 38 H 1.09006 * 110.36333 * 143.05148 * 21 5 4 39 39 H 1.09005 * 109.47255 * 58.54253 * 24 22 21 40 40 H 1.08997 * 109.47668 * 178.54248 * 24 22 21 41 41 H 1.09005 * 109.47183 * 298.54517 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0759 -0.7933 1.2059 5 7 2.3725 -2.1571 0.7353 6 16 3.0043 -3.3824 1.6528 7 8 2.6121 -3.0637 2.9809 8 8 2.5455 -4.5680 1.0179 9 6 4.8001 -3.2116 1.4610 10 6 5.5083 -4.2026 2.3870 11 6 5.2887 -5.6594 2.0698 12 1 4.5149 -6.2126 2.5812 13 6 6.0756 -6.2859 1.1268 14 7 6.9120 -5.5819 0.3957 15 14 5.9537 -8.1345 0.8875 16 1 4.5675 -8.4922 0.4929 17 1 6.8972 -8.5590 -0.1776 18 1 6.2999 -8.8218 2.1576 19 6 5.6525 -3.8143 3.8598 20 6 6.8762 -3.7986 2.9405 21 6 2.0124 -2.2497 -0.6913 22 6 2.0789 -0.7935 -1.2152 23 1 3.1059 -0.5052 -1.4390 24 6 1.1815 -0.6099 -2.4406 25 1 -0.3635 -1.0261 0.0563 26 1 -0.3633 0.5619 0.8605 27 1 -0.3634 0.4644 -0.9168 28 1 2.9867 -0.3235 1.5770 29 1 1.3272 -0.8266 1.9974 30 1 5.0765 -3.4190 0.4273 31 1 5.0982 -2.1957 1.7201 32 1 7.4121 -6.0100 -0.3167 33 1 5.2431 -2.8525 4.1691 34 1 5.5888 -4.6124 4.5993 35 1 7.6172 -4.5865 3.0756 36 1 7.2715 -2.8266 2.6453 37 1 1.0038 -2.6474 -0.8030 38 1 2.7278 -2.8772 -1.2231 39 1 0.1538 -0.8631 -2.1797 40 1 1.2269 0.4274 -2.7723 41 1 1.5241 -1.2633 -3.2431 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336265074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -55.564056 kcal Electronic energy + Delta-G solvation = -22153.054599 eV Core-core repulsion = 18967.556109 eV Total energy + Delta-G solvation = -3185.498491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.10585 -36.74305 -36.22180 -35.04721 -32.92405 -32.03644 -30.81060 -28.13618 -26.39728 -25.96110 -25.41027 -21.91943 -21.20362 -19.52094 -19.32380 -18.33528 -17.09351 -16.54883 -15.91199 -15.23163 -14.89490 -14.57978 -14.44401 -13.95881 -13.80802 -13.59237 -13.07967 -12.79289 -12.66260 -12.31639 -12.10439 -11.91591 -11.81792 -11.74103 -11.27598 -11.18529 -11.03922 -10.91194 -10.89988 -10.74147 -10.58974 -10.53432 -10.48036 -10.44521 -10.10516 -9.70508 -8.96435 -8.72508 -8.55447 -8.04682 -6.13148 -4.23771 1.05220 3.33259 3.34920 3.41460 3.41826 4.35320 4.38123 4.51689 4.61561 4.80443 4.98049 5.11490 5.14889 5.21510 5.31922 5.37449 5.44172 5.50576 5.59630 5.70455 5.73868 5.79861 5.81655 5.91176 5.95580 5.98544 6.12199 6.16140 6.23976 6.32165 6.36618 6.47487 6.62548 6.71546 6.74455 6.99735 7.26026 7.39491 7.81060 8.21215 8.81357 9.47270 10.94592 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.005593 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.118401 B = 5004.711778 C = 5475.989440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.125 3.875 5 N -1.022 6.022 6 S 2.620 3.380 7 O -0.970 6.970 8 O -0.946 6.946 9 C -0.552 4.552 10 C 0.043 3.957 11 C -0.517 4.517 12 H 0.068 0.932 13 C 0.082 3.918 14 N -0.875 5.875 15 Si 0.891 3.109 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.208 4.208 20 C -0.141 4.141 21 C 0.127 3.873 22 C -0.102 4.102 23 H 0.085 0.915 24 C -0.144 4.144 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 12.618 -4.207 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.859 5.859 6 S 2.719 3.281 7 O -0.960 6.960 8 O -0.936 6.936 9 C -0.685 4.685 10 C 0.040 3.960 11 C -0.554 4.554 12 H 0.086 0.914 13 C -0.123 4.123 14 N -0.511 5.511 15 Si 0.718 3.282 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.245 4.245 20 C -0.180 4.180 21 C 0.001 3.999 22 C -0.122 4.122 23 H 0.103 0.897 24 C -0.202 4.202 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.681 11.893 -3.771 15.200 hybrid contribution 0.741 -0.557 -0.549 1.077 sum -7.941 11.336 -4.321 14.499 Atomic orbital electron populations 1.21889 0.94509 1.02307 1.01663 1.22210 0.96263 0.98968 0.94314 0.89741 1.21737 0.99990 0.81811 0.96582 1.59149 1.79603 1.25695 1.21434 1.04882 0.78020 0.72132 0.73023 1.93482 1.82134 1.83989 1.36431 1.93534 1.79749 1.44216 1.76101 1.30014 1.21934 1.05583 1.11003 1.18292 0.96892 0.92992 0.87807 1.20487 1.18800 0.91995 1.24081 0.91416 1.24950 0.93889 0.98479 0.94955 1.69972 1.25953 1.36204 1.18956 0.86651 0.78489 0.85094 0.78013 1.19455 1.21101 1.19848 1.23196 1.04981 1.01222 0.95148 1.22550 0.91826 1.00161 1.03474 1.21957 1.00818 0.96635 0.80492 1.22430 1.00209 0.95006 0.94582 0.89705 1.21789 0.99877 1.01637 0.96893 0.92207 0.92585 0.92050 0.92064 0.91253 0.84930 0.88516 0.92679 0.90704 0.89516 0.89576 0.91560 0.91629 0.90649 0.91865 0.92425 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.93 37.15 0.29 -1.03 16 2 C -0.10 -0.99 3.47 -88.78 -0.31 -1.30 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.12 1.64 6.50 -2.92 -0.02 1.62 16 5 N -1.02 -16.64 3.63 -111.22 -0.40 -17.04 16 6 S 2.62 55.36 5.39 -107.50 -0.58 54.78 16 7 O -0.97 -22.02 17.61 -57.54 -1.01 -23.04 16 8 O -0.95 -23.28 17.26 -57.54 -0.99 -24.28 16 9 C -0.55 -11.93 6.03 37.16 0.22 -11.70 16 10 C 0.04 1.06 1.32 -155.66 -0.21 0.85 16 11 C -0.52 -14.34 8.17 -34.44 -0.28 -14.62 16 12 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 13 C 0.08 2.27 5.38 -17.82 -0.10 2.17 16 14 N -0.88 -24.32 12.98 55.43 0.72 -23.60 16 15 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.21 -4.66 9.96 -26.70 -0.27 -4.92 16 20 C -0.14 -3.26 9.49 -26.70 -0.25 -3.51 16 21 C 0.13 1.77 6.04 -2.53 -0.02 1.76 16 22 C -0.10 -1.08 3.51 -88.47 -0.31 -1.39 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 24 C -0.14 -1.22 8.46 37.16 0.31 -0.91 16 25 H 0.06 0.62 7.57 -51.93 -0.39 0.22 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.46 6.64 -51.93 -0.34 0.12 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 30 H 0.13 2.98 8.14 -51.93 -0.42 2.56 16 31 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 32 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 33 H 0.07 1.53 8.14 -51.92 -0.42 1.10 16 34 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 35 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 0.89 7.69 -51.93 -0.40 0.49 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.51 6.34 -51.93 -0.33 0.19 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.44 342.04 -9.97 -42.41 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.91 Total: 2.07 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: -0.92 Total: -32.98 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.32 Total: -40.64 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -2.01 Total: -47.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 55.36 SS G_CDS: -0.58 Total: 54.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.44 -9.97 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336265074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.155 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds