Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.64583 * 2 1 4 4 C 1.54326 * 110.71939 * 123.34071 * 2 1 3 5 5 N 1.47284 * 107.31132 * 96.17549 * 4 2 1 6 6 S 1.65599 * 125.79482 * 178.92565 * 5 4 2 7 7 O 1.42099 * 104.27535 * 26.07007 * 6 5 4 8 8 O 1.42100 * 104.27580 * 153.93132 * 6 5 4 9 9 C 1.81408 * 104.44674 * 269.99983 * 6 5 4 10 10 C 1.53002 * 109.46725 * 173.98445 * 9 6 5 11 11 C 1.50703 * 115.55061 * 65.20677 * 10 9 6 12 12 H 1.08004 * 119.99340 * 264.78365 * 11 10 9 13 13 C 1.37871 * 120.00437 * 84.77598 * 11 10 9 14 14 N 1.31515 * 119.99853 * 352.22862 * 13 11 10 15 15 Si 1.86799 * 120.00302 * 172.22670 * 13 11 10 16 16 H 1.48504 * 109.47160 * 59.99967 * 15 13 11 17 17 H 1.48492 * 109.47249 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46733 * 300.00341 * 15 13 11 19 19 C 1.52998 * 117.50406 * 279.53222 * 10 9 6 20 20 C 1.52997 * 117.50010 * 210.87057 * 10 9 6 21 21 C 1.47426 * 108.55371 * 358.92823 * 5 4 2 22 22 C 1.54903 * 104.93388 * 24.15447 * 21 5 4 23 23 H 1.08997 * 111.00700 * 81.04409 * 22 21 5 24 24 C 1.52997 * 111.00805 * 204.86278 * 22 21 5 25 25 H 1.09000 * 109.47821 * 183.14262 * 1 2 3 26 26 H 1.09000 * 109.47177 * 303.14298 * 1 2 3 27 27 H 1.09007 * 109.47216 * 63.13664 * 1 2 3 28 28 H 1.08999 * 109.88331 * 215.58781 * 4 2 1 29 29 H 1.09005 * 109.88057 * 336.59095 * 4 2 1 30 30 H 1.08992 * 109.47409 * 293.98519 * 9 6 5 31 31 H 1.08995 * 109.47099 * 53.99181 * 9 6 5 32 32 H 0.97002 * 119.99681 * 185.02325 * 14 13 11 33 33 H 1.09008 * 117.49472 * 359.97438 * 19 10 9 34 34 H 1.08992 * 117.50139 * 145.02149 * 19 10 9 35 35 H 1.09003 * 117.50191 * 214.98309 * 20 10 9 36 36 H 1.09006 * 117.49844 * 0.02562 * 20 10 9 37 37 H 1.08996 * 110.36617 * 265.25297 * 21 5 4 38 38 H 1.09006 * 110.36333 * 143.05148 * 21 5 4 39 39 H 1.09005 * 109.47255 * 58.54253 * 24 22 21 40 40 H 1.08997 * 109.47668 * 178.54248 * 24 22 21 41 41 H 1.09005 * 109.47183 * 298.54517 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0759 -0.7933 1.2059 5 7 2.3725 -2.1571 0.7353 6 16 3.0043 -3.3824 1.6528 7 8 2.6121 -3.0637 2.9809 8 8 2.5455 -4.5680 1.0179 9 6 4.8001 -3.2116 1.4610 10 6 5.5083 -4.2026 2.3870 11 6 5.2887 -5.6594 2.0698 12 1 4.5149 -6.2126 2.5812 13 6 6.0756 -6.2859 1.1268 14 7 6.9120 -5.5819 0.3957 15 14 5.9537 -8.1345 0.8875 16 1 4.5675 -8.4922 0.4929 17 1 6.8972 -8.5590 -0.1776 18 1 6.2999 -8.8218 2.1576 19 6 5.6525 -3.8143 3.8598 20 6 6.8762 -3.7986 2.9405 21 6 2.0124 -2.2497 -0.6913 22 6 2.0789 -0.7935 -1.2152 23 1 3.1059 -0.5052 -1.4390 24 6 1.1815 -0.6099 -2.4406 25 1 -0.3635 -1.0261 0.0563 26 1 -0.3633 0.5619 0.8605 27 1 -0.3634 0.4644 -0.9168 28 1 2.9867 -0.3235 1.5770 29 1 1.3272 -0.8266 1.9974 30 1 5.0765 -3.4190 0.4273 31 1 5.0982 -2.1957 1.7201 32 1 7.4121 -6.0100 -0.3167 33 1 5.2431 -2.8525 4.1691 34 1 5.5888 -4.6124 4.5993 35 1 7.6172 -4.5865 3.0756 36 1 7.2715 -2.8266 2.6453 37 1 1.0038 -2.6474 -0.8030 38 1 2.7278 -2.8772 -1.2231 39 1 0.1538 -0.8631 -2.1797 40 1 1.2269 0.4274 -2.7723 41 1 1.5241 -1.2633 -3.2431 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336265074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -76.609134 kcal Electronic energy + Delta-G solvation = -22153.967182 eV Core-core repulsion = 18967.556109 eV Total energy + Delta-G solvation = -3186.411074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07845 -38.59811 -37.99762 -36.83022 -34.11648 -33.96423 -31.65733 -29.88567 -27.55934 -27.28902 -26.82813 -23.04901 -22.93779 -21.38473 -20.20193 -19.85586 -18.56043 -18.41586 -17.22316 -16.86640 -16.70138 -16.31278 -15.61852 -15.36485 -15.15551 -14.76073 -14.59852 -13.80149 -13.77663 -13.73849 -13.56807 -13.37726 -13.16968 -12.97387 -12.94971 -12.89588 -12.86886 -12.54066 -12.46063 -12.26058 -12.02618 -11.93073 -11.65078 -11.58255 -11.34246 -11.27472 -10.91220 -10.58011 -10.17191 -9.72767 -8.21970 -6.37057 -0.59365 1.37328 1.39251 1.46544 1.93462 2.37770 2.96649 3.04370 3.20242 3.35955 3.55631 3.70811 3.96297 3.98202 4.22455 4.28660 4.42542 4.47563 4.52406 4.57079 4.63413 4.68147 4.72700 4.80071 4.89349 4.94449 4.96389 5.02994 5.11702 5.17467 5.19540 5.27855 5.35657 5.37693 5.43469 5.55791 5.58187 5.62142 5.68487 6.19369 6.68724 7.35246 8.85114 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.005593 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.118401 B = 5004.711778 C = 5475.989440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.113 0.887 4 C 0.109 3.891 5 N -1.020 6.020 6 S 2.635 3.365 7 O -0.990 6.990 8 O -0.991 6.991 9 C -0.547 4.547 10 C 0.008 3.992 11 C -0.537 4.537 12 H 0.047 0.953 13 C 0.042 3.958 14 N -0.893 5.893 15 Si 0.936 3.064 16 H -0.278 1.278 17 H -0.272 1.272 18 H -0.266 1.266 19 C -0.196 4.196 20 C -0.136 4.136 21 C 0.113 3.887 22 C -0.094 4.094 23 H 0.091 0.909 24 C -0.142 4.142 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.266 0.734 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 14.840 -4.882 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.132 0.868 4 C -0.015 4.015 5 N -0.859 5.859 6 S 2.734 3.266 7 O -0.981 6.981 8 O -0.982 6.982 9 C -0.680 4.680 10 C 0.005 3.995 11 C -0.574 4.574 12 H 0.066 0.934 13 C -0.161 4.161 14 N -0.529 5.529 15 Si 0.761 3.239 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.191 1.191 19 C -0.233 4.233 20 C -0.175 4.175 21 C -0.012 4.012 22 C -0.114 4.114 23 H 0.109 0.891 24 C -0.199 4.199 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.953 14.109 -4.432 17.288 hybrid contribution 0.783 -1.200 -0.329 1.471 sum -8.170 12.909 -4.762 16.002 Atomic orbital electron populations 1.21911 0.93787 1.01551 1.03144 1.22256 0.96823 0.99622 0.92129 0.86847 1.22132 1.00873 0.80399 0.98128 1.58717 1.78792 1.26184 1.22219 1.04070 0.77806 0.72049 0.72625 1.93440 1.82357 1.84381 1.37900 1.93469 1.80475 1.47340 1.76889 1.29880 1.22109 1.06582 1.09446 1.18438 0.98701 0.92425 0.89900 1.20668 1.18486 0.94002 1.24257 0.93447 1.25537 0.93847 1.01787 0.94886 1.70018 1.26349 1.37274 1.19229 0.85948 0.78131 0.81314 0.78512 1.20336 1.19636 1.19124 1.23242 1.04046 1.02142 0.93867 1.22511 0.91095 1.00541 1.03391 1.22251 1.00374 0.99376 0.79194 1.22439 1.01275 0.92124 0.95582 0.89113 1.21791 0.99428 1.02962 0.95732 0.94035 0.91783 0.90012 0.90624 0.91758 0.86248 0.85187 0.92457 0.88318 0.89874 0.91440 0.89331 0.91650 0.91863 0.91583 0.90326 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.93 71.98 0.57 -1.68 16 2 C -0.09 -1.51 3.47 -9.60 -0.03 -1.54 16 3 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.11 2.66 6.50 86.68 0.56 3.23 16 5 N -1.02 -32.54 3.63 -505.80 -1.84 -34.38 16 6 S 2.63 112.26 5.39 -56.49 -0.30 111.96 16 7 O -0.99 -44.96 17.61 -127.65 -2.25 -47.21 16 8 O -0.99 -50.52 17.26 -127.65 -2.20 -52.73 16 9 C -0.55 -23.42 6.03 71.98 0.43 -22.98 16 10 C 0.01 0.38 1.32 -52.93 -0.07 0.31 16 11 C -0.54 -30.45 8.17 25.60 0.21 -30.24 16 12 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16 13 C 0.04 2.37 5.38 84.65 0.46 2.82 16 14 N -0.89 -49.89 12.98 21.45 0.28 -49.61 16 15 Si 0.94 44.60 29.55 68.60 2.03 46.62 16 16 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C -0.20 -8.59 9.96 30.62 0.30 -8.28 16 20 C -0.14 -6.20 9.49 30.62 0.29 -5.91 16 21 C 0.11 3.11 6.04 86.85 0.52 3.63 16 22 C -0.09 -1.76 3.51 -9.40 -0.03 -1.79 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 C -0.14 -1.98 8.46 71.98 0.61 -1.37 16 25 H 0.04 0.79 7.57 -2.39 -0.02 0.77 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 0.93 6.64 -2.38 -0.02 0.92 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.63 7.84 -2.38 -0.02 1.61 16 30 H 0.12 5.42 8.14 -2.39 -0.02 5.40 16 31 H 0.13 4.53 8.09 -2.39 -0.02 4.51 16 32 H 0.27 14.12 8.32 -92.71 -0.77 13.35 16 33 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 34 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 3.57 8.14 -2.38 -0.02 3.55 16 37 H 0.07 1.77 7.69 -2.39 -0.02 1.75 16 38 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 0.90 6.34 -2.38 -0.02 0.88 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -70.54 342.04 0.53 -70.01 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.99 Total: 19.13 kcal Atomic # 6 Polarization: -67.63 SS G_CDS: 3.83 Total: -63.80 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.56 Total: -83.99 kcal Atomic # 8 Polarization: -95.48 SS G_CDS: -4.45 Total: -99.93 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 112.26 SS G_CDS: -0.30 Total: 111.96 kcal Total: -70.54 0.53 -70.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336265074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.596 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds