Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.88091 * 2 1 4 4 C 1.54325 * 109.88020 * 238.98067 * 2 1 3 5 5 H 1.09002 * 110.87493 * 336.82749 * 4 2 1 6 6 C 1.53003 * 110.72003 * 100.03276 * 4 2 1 7 7 C 1.55160 * 102.94250 * 218.39220 * 4 2 1 8 8 C 1.54912 * 101.57965 * 35.50145 * 7 4 2 9 9 N 1.47289 * 109.87171 * 121.14111 * 2 1 3 10 10 S 1.65605 * 125.79075 * 298.35267 * 9 2 1 11 11 O 1.42103 * 104.27630 * 26.09598 * 10 9 2 12 12 O 1.42098 * 104.27532 * 153.95541 * 10 9 2 13 13 C 1.81401 * 104.45020 * 270.02687 * 10 9 2 14 14 C 1.52995 * 109.47174 * 173.98461 * 13 10 9 15 15 C 1.50702 * 115.54898 * 65.20092 * 14 13 10 16 16 H 1.08003 * 119.99951 * 264.77799 * 15 14 13 17 17 C 1.37871 * 120.00289 * 84.78682 * 15 14 13 18 18 N 1.31520 * 119.99988 * 352.22653 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 172.22796 * 17 15 14 20 20 H 1.48495 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47241 * 119.99969 * 19 17 15 22 22 H 1.48501 * 109.47301 * 239.99420 * 19 17 15 23 23 C 1.53003 * 117.49859 * 279.53040 * 14 13 10 24 24 C 1.53005 * 117.50169 * 210.87093 * 14 13 10 25 25 H 1.08994 * 109.47824 * 181.01681 * 1 2 3 26 26 H 1.08998 * 109.47107 * 301.01930 * 1 2 3 27 27 H 1.09007 * 109.47190 * 61.01241 * 1 2 3 28 28 H 1.08997 * 109.47444 * 174.97701 * 6 4 2 29 29 H 1.09002 * 109.46683 * 294.97570 * 6 4 2 30 30 H 1.09000 * 109.47031 * 54.97265 * 6 4 2 31 31 H 1.09001 * 111.00629 * 277.43142 * 7 4 2 32 32 H 1.08997 * 111.04043 * 153.59148 * 7 4 2 33 33 H 1.09003 * 110.36298 * 81.83129 * 8 7 4 34 34 H 1.09000 * 110.36485 * 204.03865 * 8 7 4 35 35 H 1.08994 * 109.47273 * 293.98579 * 13 10 9 36 36 H 1.09004 * 109.47446 * 53.98433 * 13 10 9 37 37 H 0.97000 * 120.00075 * 185.02291 * 18 17 15 38 38 H 1.08993 * 117.50065 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49649 * 145.02416 * 23 14 13 40 40 H 1.08996 * 117.50050 * 214.98605 * 24 14 13 41 41 H 1.09006 * 117.49453 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0547 -0.7479 -1.2437 5 1 1.3063 -1.4436 -1.6231 6 6 2.4733 0.2411 -2.3335 7 6 3.2875 -1.5134 -0.6944 8 6 2.8143 -1.8805 0.7342 9 7 2.0306 -0.7163 1.1856 10 16 1.7598 -0.2877 2.7621 11 8 0.5372 0.4354 2.7236 12 8 1.8664 -1.5090 3.4805 13 6 3.1393 0.8159 3.1745 14 6 2.9226 1.4035 4.5703 15 6 2.9543 0.4121 5.7050 16 1 2.0333 -0.0100 6.0791 17 6 4.1590 0.0442 6.2655 18 7 5.2874 0.4366 5.7153 19 14 4.1888 -1.0115 7.8062 20 1 2.7969 -1.3173 8.2236 21 1 4.9101 -2.2786 7.5242 22 1 4.8831 -0.2786 8.8952 23 6 1.9660 2.5910 4.6963 24 6 3.4749 2.8045 4.8407 25 1 -0.3634 -1.0274 0.0182 26 1 -0.3633 0.5296 0.8807 27 1 -0.3634 0.4981 -0.8990 28 1 2.9222 -0.3026 -3.1647 29 1 1.5971 0.7852 -2.6863 30 1 3.1985 0.9454 -1.9260 31 1 4.1653 -0.8681 -0.6615 32 1 3.4857 -2.4094 -1.2826 33 1 2.1884 -2.7725 0.7090 34 1 3.6715 -2.0378 1.3890 35 1 4.0724 0.2529 3.1581 36 1 3.1894 1.6235 2.4441 37 1 6.1341 0.1186 6.0658 38 1 1.4907 2.9533 3.7848 39 1 1.3600 2.6554 5.6000 40 1 3.8609 3.0093 5.8392 41 1 3.9930 3.3074 4.0241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336269030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -55.742205 kcal Electronic energy + Delta-G solvation = -22359.301087 eV Core-core repulsion = 19173.794871 eV Total energy + Delta-G solvation = -3185.506216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.91981 -36.74374 -36.25087 -35.04301 -32.43902 -32.03841 -31.17567 -28.18408 -27.51154 -25.44441 -24.14602 -21.85710 -21.20490 -20.30183 -19.49449 -18.16496 -16.88248 -16.56610 -16.02280 -15.08645 -14.81508 -14.54577 -14.01392 -13.89869 -13.62684 -13.42456 -13.27667 -13.08900 -12.67935 -12.36574 -11.94011 -11.85483 -11.80133 -11.56428 -11.22198 -11.07068 -11.00968 -10.95451 -10.94178 -10.88186 -10.64261 -10.56967 -10.45754 -10.24248 -10.08016 -9.69082 -8.95301 -8.73674 -8.56742 -8.04794 -6.13720 -4.24086 1.06251 3.28731 3.36472 3.40301 3.44050 4.37774 4.43187 4.55624 4.62775 4.81285 5.02338 5.14514 5.21494 5.26855 5.32224 5.38846 5.43167 5.58200 5.62141 5.69380 5.71827 5.82476 5.94245 5.95629 6.00463 6.02555 6.18205 6.23953 6.28667 6.37147 6.51551 6.62536 6.65535 6.72236 6.79270 6.99802 7.26061 7.39328 7.81012 8.20994 8.81695 9.47040 10.94109 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.005776 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.141587 B = 4846.795547 C = 5123.466551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.154 3.846 3 H 0.070 0.930 4 C -0.099 4.099 5 H 0.083 0.917 6 C -0.142 4.142 7 C -0.129 4.129 8 C 0.122 3.878 9 N -1.019 6.019 10 S 2.620 3.380 11 O -0.966 6.966 12 O -0.947 6.947 13 C -0.553 4.553 14 C 0.042 3.958 15 C -0.515 4.515 16 H 0.069 0.931 17 C 0.081 3.919 18 N -0.875 5.875 19 Si 0.892 3.108 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.282 1.282 23 C -0.207 4.207 24 C -0.142 4.142 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -0.792 -15.001 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.047 3.953 3 H 0.088 0.912 4 C -0.119 4.119 5 H 0.101 0.899 6 C -0.200 4.200 7 C -0.168 4.168 8 C -0.004 4.004 9 N -0.855 5.855 10 S 2.720 3.280 11 O -0.957 6.957 12 O -0.938 6.938 13 C -0.686 4.686 14 C 0.040 3.960 15 C -0.552 4.552 16 H 0.087 0.913 17 C -0.124 4.124 18 N -0.511 5.511 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.245 4.245 24 C -0.181 4.181 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.470 -1.064 -14.336 14.788 hybrid contribution 0.910 -0.234 0.545 1.086 sum -2.560 -1.298 -13.791 14.086 Atomic orbital electron populations 1.22521 0.94935 1.02773 1.03869 1.21333 0.94237 0.95284 0.84405 0.91182 1.22302 0.97639 0.97437 0.94504 0.89864 1.21775 1.01422 0.98853 0.97951 1.22895 0.97813 1.00470 0.95572 1.21864 0.94880 0.88409 0.95200 1.59225 1.66748 1.37118 1.22428 1.04863 0.76758 0.75817 0.70579 1.93441 1.41763 1.75455 1.85033 1.93529 1.87431 1.43255 1.69546 1.30019 1.18778 1.13769 1.06052 1.18300 0.99798 0.88405 0.89497 1.20570 0.93674 1.25299 1.15658 0.91316 1.24961 0.95374 0.95041 0.97000 1.69992 0.97408 1.43003 1.40683 0.86512 0.78705 0.80014 0.82842 1.19193 1.20620 1.20807 1.23190 0.93219 1.06432 1.01629 1.22552 0.93564 1.00853 1.01113 0.92597 0.88921 0.92200 0.92376 0.92436 0.92302 0.90532 0.90364 0.91737 0.90594 0.85009 0.88554 0.92787 0.90679 0.89533 0.89587 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.98 37.15 0.33 -2.13 16 2 C 0.15 2.06 3.27 -66.81 -0.22 1.84 16 3 H 0.07 0.89 7.78 -51.93 -0.40 0.49 16 4 C -0.10 -1.02 3.07 -88.78 -0.27 -1.29 16 5 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 6 C -0.14 -1.19 9.14 37.16 0.34 -0.85 16 7 C -0.13 -1.34 6.53 -24.58 -0.16 -1.50 16 8 C 0.12 1.69 6.88 -2.53 -0.02 1.68 16 9 N -1.02 -16.53 3.33 -104.24 -0.35 -16.88 16 10 S 2.62 54.81 5.38 -107.50 -0.58 54.23 16 11 O -0.97 -21.15 15.04 -57.54 -0.87 -22.02 16 12 O -0.95 -23.25 17.26 -57.54 -0.99 -24.24 16 13 C -0.55 -11.93 6.03 37.16 0.22 -11.71 16 14 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 15 C -0.51 -14.28 8.17 -34.44 -0.28 -14.56 16 16 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 17 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 18 N -0.88 -24.33 12.98 55.43 0.72 -23.61 16 19 Si 0.89 21.60 29.55 -169.99 -5.02 16.58 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.21 -4.61 9.96 -26.69 -0.27 -4.87 16 24 C -0.14 -3.27 9.49 -26.69 -0.25 -3.52 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.50 5.71 -51.93 -0.30 1.21 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.13 2.98 8.14 -51.93 -0.42 2.55 16 36 H 0.10 1.77 8.09 -51.92 -0.42 1.35 16 37 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 38 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -31.95 342.54 -9.78 -41.74 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.99 Total: 2.98 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: -0.87 Total: -33.94 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.37 Total: -40.49 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.86 Total: -46.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 54.81 SS G_CDS: -0.58 Total: 54.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.95 -9.78 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336269030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.005 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds