Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.88091 * 2 1 4 4 C 1.54325 * 109.88020 * 238.98067 * 2 1 3 5 5 H 1.09002 * 110.87493 * 336.82749 * 4 2 1 6 6 C 1.53003 * 110.72003 * 100.03276 * 4 2 1 7 7 C 1.55160 * 102.94250 * 218.39220 * 4 2 1 8 8 C 1.54912 * 101.57965 * 35.50145 * 7 4 2 9 9 N 1.47289 * 109.87171 * 121.14111 * 2 1 3 10 10 S 1.65605 * 125.79075 * 298.35267 * 9 2 1 11 11 O 1.42103 * 104.27630 * 26.09598 * 10 9 2 12 12 O 1.42098 * 104.27532 * 153.95541 * 10 9 2 13 13 C 1.81401 * 104.45020 * 270.02687 * 10 9 2 14 14 C 1.52995 * 109.47174 * 173.98461 * 13 10 9 15 15 C 1.50702 * 115.54898 * 65.20092 * 14 13 10 16 16 H 1.08003 * 119.99951 * 264.77799 * 15 14 13 17 17 C 1.37871 * 120.00289 * 84.78682 * 15 14 13 18 18 N 1.31520 * 119.99988 * 352.22653 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 172.22796 * 17 15 14 20 20 H 1.48495 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47241 * 119.99969 * 19 17 15 22 22 H 1.48501 * 109.47301 * 239.99420 * 19 17 15 23 23 C 1.53003 * 117.49859 * 279.53040 * 14 13 10 24 24 C 1.53005 * 117.50169 * 210.87093 * 14 13 10 25 25 H 1.08994 * 109.47824 * 181.01681 * 1 2 3 26 26 H 1.08998 * 109.47107 * 301.01930 * 1 2 3 27 27 H 1.09007 * 109.47190 * 61.01241 * 1 2 3 28 28 H 1.08997 * 109.47444 * 174.97701 * 6 4 2 29 29 H 1.09002 * 109.46683 * 294.97570 * 6 4 2 30 30 H 1.09000 * 109.47031 * 54.97265 * 6 4 2 31 31 H 1.09001 * 111.00629 * 277.43142 * 7 4 2 32 32 H 1.08997 * 111.04043 * 153.59148 * 7 4 2 33 33 H 1.09003 * 110.36298 * 81.83129 * 8 7 4 34 34 H 1.09000 * 110.36485 * 204.03865 * 8 7 4 35 35 H 1.08994 * 109.47273 * 293.98579 * 13 10 9 36 36 H 1.09004 * 109.47446 * 53.98433 * 13 10 9 37 37 H 0.97000 * 120.00075 * 185.02291 * 18 17 15 38 38 H 1.08993 * 117.50065 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49649 * 145.02416 * 23 14 13 40 40 H 1.08996 * 117.50050 * 214.98605 * 24 14 13 41 41 H 1.09006 * 117.49453 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0547 -0.7479 -1.2437 5 1 1.3063 -1.4436 -1.6231 6 6 2.4733 0.2411 -2.3335 7 6 3.2875 -1.5134 -0.6944 8 6 2.8143 -1.8805 0.7342 9 7 2.0306 -0.7163 1.1856 10 16 1.7598 -0.2877 2.7621 11 8 0.5372 0.4354 2.7236 12 8 1.8664 -1.5090 3.4805 13 6 3.1393 0.8159 3.1745 14 6 2.9226 1.4035 4.5703 15 6 2.9543 0.4121 5.7050 16 1 2.0333 -0.0100 6.0791 17 6 4.1590 0.0442 6.2655 18 7 5.2874 0.4366 5.7153 19 14 4.1888 -1.0115 7.8062 20 1 2.7969 -1.3173 8.2236 21 1 4.9101 -2.2786 7.5242 22 1 4.8831 -0.2786 8.8952 23 6 1.9660 2.5910 4.6963 24 6 3.4749 2.8045 4.8407 25 1 -0.3634 -1.0274 0.0182 26 1 -0.3633 0.5296 0.8807 27 1 -0.3634 0.4981 -0.8990 28 1 2.9222 -0.3026 -3.1647 29 1 1.5971 0.7852 -2.6863 30 1 3.1985 0.9454 -1.9260 31 1 4.1653 -0.8681 -0.6615 32 1 3.4857 -2.4094 -1.2826 33 1 2.1884 -2.7725 0.7090 34 1 3.6715 -2.0378 1.3890 35 1 4.0724 0.2529 3.1581 36 1 3.1894 1.6235 2.4441 37 1 6.1341 0.1186 6.0658 38 1 1.4907 2.9533 3.7848 39 1 1.3600 2.6554 5.6000 40 1 3.8609 3.0093 5.8392 41 1 3.9930 3.3074 4.0241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336269030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -76.031967 kcal Electronic energy + Delta-G solvation = -22360.180917 eV Core-core repulsion = 19173.794871 eV Total energy + Delta-G solvation = -3186.386046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93376 -38.59496 -37.98472 -36.79283 -34.11874 -33.41712 -32.19361 -29.89664 -28.50544 -27.50610 -25.08648 -23.06692 -22.92454 -21.37828 -21.19131 -19.69447 -18.41006 -18.30654 -17.34926 -16.78068 -16.71223 -16.18575 -15.64475 -15.01577 -14.91346 -14.69705 -14.58390 -14.17525 -13.79666 -13.72013 -13.63553 -13.39291 -13.12950 -12.92011 -12.87801 -12.82618 -12.62450 -12.49929 -12.45921 -12.26264 -12.11993 -11.93821 -11.74052 -11.57514 -11.47515 -11.20624 -10.90677 -10.58487 -10.17012 -9.72606 -8.22574 -6.37508 -0.56085 1.34698 1.37700 1.49318 1.95007 2.37274 2.98909 3.04300 3.23841 3.36322 3.57277 3.79014 3.94439 3.99955 4.24106 4.27587 4.39439 4.47851 4.52513 4.56098 4.62477 4.69657 4.79538 4.80163 4.82589 4.90444 4.94611 5.11704 5.15658 5.17644 5.21684 5.29942 5.34803 5.43236 5.54248 5.55700 5.58962 5.64291 5.68620 6.19239 6.68906 7.34910 8.84893 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.005776 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.141587 B = 4846.795547 C = 5123.466551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.140 3.860 3 H 0.078 0.922 4 C -0.090 4.090 5 H 0.094 0.906 6 C -0.139 4.139 7 C -0.119 4.119 8 C 0.107 3.893 9 N -1.017 6.017 10 S 2.634 3.366 11 O -0.981 6.981 12 O -0.994 6.994 13 C -0.550 4.550 14 C 0.008 3.992 15 C -0.534 4.534 16 H 0.047 0.953 17 C 0.041 3.959 18 N -0.894 5.894 19 Si 0.937 3.063 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.269 1.269 23 C -0.194 4.194 24 C -0.138 4.138 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -0.534 -17.389 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.110 4.110 5 H 0.113 0.887 6 C -0.197 4.197 7 C -0.157 4.157 8 C -0.018 4.018 9 N -0.856 5.856 10 S 2.734 3.266 11 O -0.971 6.971 12 O -0.984 6.984 13 C -0.683 4.683 14 C 0.006 3.994 15 C -0.572 4.572 16 H 0.065 0.935 17 C -0.162 4.162 18 N -0.530 5.530 19 Si 0.763 3.237 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.231 4.231 24 C -0.177 4.177 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.239 -0.793 -16.711 17.041 hybrid contribution 0.793 -0.314 1.226 1.494 sum -2.446 -1.107 -15.485 15.716 Atomic orbital electron populations 1.22511 0.95165 1.02545 1.03941 1.21735 0.94235 0.96031 0.84502 0.90380 1.22309 0.97579 0.97699 0.93414 0.88729 1.21772 1.01858 0.98489 0.97580 1.22910 0.97912 1.01785 0.93122 1.22167 0.94431 0.87806 0.97372 1.58843 1.67143 1.38034 1.21572 1.04090 0.76266 0.74833 0.71399 1.93423 1.42312 1.75599 1.85807 1.93463 1.87912 1.45146 1.71877 1.29905 1.18366 1.14767 1.05239 1.18434 1.02114 0.88664 0.90183 1.20728 0.93028 1.26282 1.17133 0.93459 1.25552 0.95237 0.96208 0.99187 1.70035 0.97630 1.43744 1.41573 0.85816 0.78424 0.79052 0.80456 1.19746 1.20080 1.19417 1.23232 0.92828 1.04489 1.02565 1.22513 0.94353 1.00003 1.00863 0.92860 0.91948 0.89102 0.90663 0.91584 0.92558 0.90073 0.87618 0.91428 0.91734 0.86488 0.85428 0.92483 0.88272 0.89869 0.91468 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.63 8.98 71.98 0.65 -3.99 16 2 C 0.14 3.45 3.27 45.29 0.15 3.60 16 3 H 0.08 1.79 7.78 -2.39 -0.02 1.77 16 4 C -0.09 -1.54 3.07 -9.60 -0.03 -1.57 16 5 H 0.09 1.44 7.86 -2.39 -0.02 1.42 16 6 C -0.14 -1.76 9.14 71.98 0.66 -1.10 16 7 C -0.12 -2.11 6.53 31.99 0.21 -1.90 16 8 C 0.11 2.86 6.88 86.86 0.60 3.46 16 9 N -1.02 -32.18 3.33 -483.71 -1.61 -33.79 16 10 S 2.63 111.36 5.38 -56.49 -0.30 111.06 16 11 O -0.98 -43.20 15.04 -127.65 -1.92 -45.12 16 12 O -0.99 -50.44 17.26 -127.65 -2.20 -52.64 16 13 C -0.55 -23.67 6.03 71.98 0.43 -23.24 16 14 C 0.01 0.41 1.32 -52.93 -0.07 0.34 16 15 C -0.53 -30.37 8.17 25.60 0.21 -30.16 16 16 H 0.05 2.80 7.83 -2.91 -0.02 2.78 16 17 C 0.04 2.29 5.38 84.65 0.46 2.74 16 18 N -0.89 -50.11 12.98 21.45 0.28 -49.83 16 19 Si 0.94 44.76 29.55 68.60 2.03 46.79 16 20 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.19 -8.49 9.96 30.62 0.30 -8.19 16 24 C -0.14 -6.31 9.49 30.62 0.29 -6.02 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.98 5.71 -2.39 -0.01 1.97 16 27 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.08 1.39 8.05 -2.39 -0.02 1.38 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.12 5.36 8.14 -2.39 -0.02 5.34 16 36 H 0.13 4.51 8.09 -2.39 -0.02 4.49 16 37 H 0.27 14.08 8.32 -92.71 -0.77 13.31 16 38 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 39 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 40 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 Total: -1.00 -69.96 342.54 1.10 -68.85 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.98 Total: 20.71 kcal Atomic # 6 Polarization: -69.88 SS G_CDS: 3.85 Total: -66.02 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.33 Total: -83.63 kcal Atomic # 8 Polarization: -93.64 SS G_CDS: -4.12 Total: -97.76 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 111.36 SS G_CDS: -0.30 Total: 111.06 kcal Total: -69.96 1.10 -68.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336269030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.179 kcal (2) G-P(sol) polarization free energy of solvation -69.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds