Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.64296 * 2 1 4 4 C 1.55158 * 110.71894 * 236.66781 * 2 1 3 5 5 C 1.55130 * 101.48355 * 205.96908 * 4 2 1 6 6 H 1.09003 * 110.49763 * 278.45613 * 5 4 2 7 7 C 1.52997 * 110.34438 * 156.06055 * 5 4 2 8 8 N 1.47421 * 104.72178 * 37.29388 * 5 4 2 9 9 S 1.65609 * 125.64900 * 155.81553 * 8 5 4 10 10 O 1.42102 * 104.27484 * 25.78865 * 9 8 5 11 11 O 1.42091 * 104.27998 * 153.64468 * 9 8 5 12 12 C 1.81393 * 104.44908 * 269.71968 * 9 8 5 13 13 C 1.53000 * 109.47171 * 174.48001 * 12 9 8 14 14 C 1.50704 * 115.54984 * 65.21472 * 13 12 9 15 15 H 1.08007 * 119.99649 * 264.78285 * 14 13 12 16 16 C 1.37867 * 120.00097 * 84.78428 * 14 13 12 17 17 N 1.31517 * 120.00036 * 352.22372 * 16 14 13 18 18 Si 1.86800 * 120.00273 * 172.22270 * 16 14 13 19 19 H 1.48495 * 109.47136 * 59.99553 * 18 16 14 20 20 H 1.48494 * 109.47719 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46853 * 300.00080 * 18 16 14 22 22 C 1.53007 * 117.49970 * 279.54465 * 13 12 9 23 23 C 1.53000 * 117.49888 * 210.88470 * 13 12 9 24 24 C 1.47017 * 108.70742 * 335.55260 * 8 5 4 25 25 H 1.09003 * 109.47191 * 298.31352 * 1 2 3 26 26 H 1.08998 * 109.46983 * 58.30643 * 1 2 3 27 27 H 1.08996 * 109.47467 * 178.31006 * 1 2 3 28 28 H 1.08993 * 111.00390 * 324.20427 * 4 2 1 29 29 H 1.09003 * 111.00294 * 88.06199 * 4 2 1 30 30 H 1.09001 * 109.47237 * 304.73935 * 7 5 4 31 31 H 1.08998 * 109.47458 * 64.73525 * 7 5 4 32 32 H 1.09000 * 109.47256 * 184.73772 * 7 5 4 33 33 H 1.09001 * 109.47436 * 294.48138 * 12 9 8 34 34 H 1.09003 * 109.47554 * 54.48333 * 12 9 8 35 35 H 0.97002 * 119.99808 * 185.02785 * 17 16 14 36 36 H 1.08999 * 117.49714 * 359.97438 * 22 13 12 37 37 H 1.09000 * 117.49633 * 145.01558 * 22 13 12 38 38 H 1.09007 * 117.49756 * 214.97394 * 23 13 12 39 39 H 1.08993 * 117.50429 * 359.97438 * 23 13 12 40 40 H 1.09003 * 109.88497 * 120.70130 * 24 8 5 41 41 H 1.09003 * 109.88329 * 241.86990 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0789 -0.7974 -1.2125 5 6 3.4665 -1.2467 -0.6841 6 1 4.1947 -0.4427 -0.7921 7 6 3.9390 -2.4980 -1.4269 8 7 3.2444 -1.5494 0.7415 9 16 4.1633 -2.5713 1.6657 10 8 5.4364 -2.5653 1.0345 11 8 4.0006 -2.0865 2.9914 12 6 3.3673 -4.1904 1.4779 13 6 4.2090 -5.2572 2.1811 14 6 4.3111 -5.1218 3.6785 15 1 5.1547 -4.6104 4.1182 16 6 3.3276 -5.6507 4.4871 17 7 2.2283 -6.1368 3.9534 18 14 3.5565 -5.6769 6.3409 19 1 3.7218 -4.2878 6.8389 20 1 2.3652 -6.2933 6.9781 21 1 4.7647 -6.4711 6.6792 22 6 5.4311 -5.7976 1.4357 23 6 4.1856 -6.6722 1.5996 24 6 2.0760 -0.7892 1.2086 25 1 -0.3634 0.4874 0.9047 26 1 -0.3633 0.5399 -0.8744 27 1 -0.3634 -1.0272 -0.0303 28 1 1.4452 -1.6559 -1.4347 29 1 2.1849 -0.1552 -2.0868 30 1 3.1820 -3.2778 -1.3432 31 1 4.0985 -2.2580 -2.4781 32 1 4.8730 -2.8497 -0.9888 33 1 2.3729 -4.1604 1.9232 34 1 3.2838 -4.4336 0.4186 35 1 1.5059 -6.4419 4.5242 36 1 5.6352 -5.3934 0.4442 37 1 6.3087 -6.0554 2.0285 38 1 4.2444 -7.5052 2.3002 39 1 3.5702 -6.8434 0.7165 40 1 1.3129 -1.4732 1.5800 41 1 2.3741 -0.0991 1.9979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336270576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = -55.882001 kcal Electronic energy + Delta-G solvation = -22458.988858 eV Core-core repulsion = 19273.476580 eV Total energy + Delta-G solvation = -3185.512278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.85840 -36.75549 -36.28391 -35.04133 -32.90866 -32.03221 -30.94179 -28.18924 -26.90081 -25.43716 -25.11463 -21.37853 -21.19527 -20.35653 -19.36076 -18.20170 -16.99850 -16.38765 -16.14423 -15.07687 -14.91075 -14.58846 -14.31635 -13.85311 -13.69459 -13.37570 -13.18236 -12.91391 -12.75060 -12.26090 -12.08058 -11.87116 -11.81296 -11.60624 -11.27170 -11.07913 -11.04797 -10.91783 -10.89756 -10.73541 -10.70713 -10.57616 -10.45100 -10.37995 -10.09871 -9.69961 -8.95453 -8.71548 -8.55079 -8.04403 -6.12744 -4.23275 1.07000 3.33381 3.35012 3.40225 3.42011 4.38397 4.42312 4.54840 4.62170 4.81144 5.02594 5.14714 5.18554 5.21573 5.30501 5.33023 5.49695 5.54424 5.58018 5.69288 5.73707 5.82611 5.89493 5.96648 5.97432 6.02909 6.19332 6.23486 6.28967 6.36166 6.39412 6.53252 6.62962 6.72308 6.80123 6.99996 7.26509 7.39496 7.81431 8.21528 8.81682 9.47674 10.94917 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.006326 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.613664 B = 4425.066805 C = 4980.685600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.153 3.847 6 H 0.074 0.926 7 C -0.197 4.197 8 N -1.020 6.020 9 S 2.621 3.379 10 O -0.969 6.969 11 O -0.948 6.948 12 C -0.553 4.553 13 C 0.044 3.956 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.082 3.918 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.208 4.208 23 C -0.141 4.141 24 C 0.124 3.876 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 9.212 -11.188 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.047 3.953 6 H 0.092 0.908 7 C -0.255 4.255 8 N -0.856 5.856 9 S 2.720 3.280 10 O -0.959 6.959 11 O -0.939 6.939 12 C -0.686 4.686 13 C 0.041 3.959 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.123 4.123 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.246 4.246 23 C -0.180 4.180 24 C -0.002 4.002 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.996 9.312 -10.575 14.406 hybrid contribution -0.654 -0.498 0.694 1.076 sum -3.651 8.814 -9.881 13.735 Atomic orbital electron populations 1.21770 0.94143 1.02314 1.01828 1.22211 0.96007 0.99299 0.94727 0.90015 1.23003 0.95872 1.00124 0.97266 1.21515 0.96640 0.97254 0.79932 0.90844 1.22536 1.03611 0.97754 1.01572 1.59163 1.44906 1.60491 1.21058 1.04844 0.74106 0.76223 0.72807 1.93458 1.38426 1.87294 1.76746 1.93522 1.85963 1.78698 1.35693 1.30079 1.13398 1.18730 1.06379 1.18284 0.93297 0.90994 0.93319 1.20489 1.08871 1.38132 0.87892 0.91442 1.24947 0.94848 0.93506 0.98983 1.69972 1.04962 1.40550 1.35555 0.86658 0.77762 0.78970 0.84910 1.19465 1.21087 1.19840 1.23197 0.93388 1.07459 1.00508 1.22548 0.98735 0.95924 1.00819 1.21716 0.87256 0.94773 0.96454 0.92304 0.92453 0.92183 0.90400 0.90497 0.91831 0.90800 0.89405 0.85022 0.88356 0.92690 0.90690 0.89536 0.89593 0.91557 0.91592 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.13 37.16 0.34 -0.93 16 2 C -0.10 -1.08 3.54 -88.78 -0.31 -1.39 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.26 5.96 -24.46 -0.15 -1.41 16 5 C 0.15 2.03 3.62 -66.30 -0.24 1.79 16 6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.20 -2.56 8.60 37.16 0.32 -2.24 16 8 N -1.02 -16.80 3.50 -104.33 -0.37 -17.16 16 9 S 2.62 55.69 4.80 -107.50 -0.52 55.17 16 10 O -0.97 -21.58 15.52 -57.54 -0.89 -22.47 16 11 O -0.95 -23.69 17.23 -57.54 -0.99 -24.69 16 12 C -0.55 -11.95 6.03 37.16 0.22 -11.72 16 13 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 14 C -0.52 -14.37 8.15 -34.44 -0.28 -14.65 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C 0.08 2.27 5.38 -17.82 -0.10 2.17 16 17 N -0.88 -24.31 12.98 55.43 0.72 -23.59 16 18 Si 0.89 21.59 29.55 -169.99 -5.02 16.57 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.21 -4.62 9.96 -26.69 -0.27 -4.88 16 23 C -0.14 -3.25 9.49 -26.69 -0.25 -3.50 16 24 C 0.12 1.77 6.49 -3.07 -0.02 1.75 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.79 7.16 -51.93 -0.37 0.42 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.36 5.87 -51.93 -0.30 1.05 16 33 H 0.13 2.99 8.14 -51.92 -0.42 2.56 16 34 H 0.10 1.81 6.76 -51.92 -0.35 1.46 16 35 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -32.15 340.13 -9.77 -41.92 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.89 Total: 3.26 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: -0.94 Total: -34.14 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.35 Total: -40.75 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.88 Total: -47.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 55.69 SS G_CDS: -0.52 Total: 55.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.15 -9.77 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336270576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.962 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds