Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.64296 * 2 1 4 4 C 1.55158 * 110.71894 * 236.66781 * 2 1 3 5 5 C 1.55130 * 101.48355 * 205.96908 * 4 2 1 6 6 H 1.09003 * 110.49763 * 278.45613 * 5 4 2 7 7 C 1.52997 * 110.34438 * 156.06055 * 5 4 2 8 8 N 1.47421 * 104.72178 * 37.29388 * 5 4 2 9 9 S 1.65609 * 125.64900 * 155.81553 * 8 5 4 10 10 O 1.42102 * 104.27484 * 25.78865 * 9 8 5 11 11 O 1.42091 * 104.27998 * 153.64468 * 9 8 5 12 12 C 1.81393 * 104.44908 * 269.71968 * 9 8 5 13 13 C 1.53000 * 109.47171 * 174.48001 * 12 9 8 14 14 C 1.50704 * 115.54984 * 65.21472 * 13 12 9 15 15 H 1.08007 * 119.99649 * 264.78285 * 14 13 12 16 16 C 1.37867 * 120.00097 * 84.78428 * 14 13 12 17 17 N 1.31517 * 120.00036 * 352.22372 * 16 14 13 18 18 Si 1.86800 * 120.00273 * 172.22270 * 16 14 13 19 19 H 1.48495 * 109.47136 * 59.99553 * 18 16 14 20 20 H 1.48494 * 109.47719 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46853 * 300.00080 * 18 16 14 22 22 C 1.53007 * 117.49970 * 279.54465 * 13 12 9 23 23 C 1.53000 * 117.49888 * 210.88470 * 13 12 9 24 24 C 1.47017 * 108.70742 * 335.55260 * 8 5 4 25 25 H 1.09003 * 109.47191 * 298.31352 * 1 2 3 26 26 H 1.08998 * 109.46983 * 58.30643 * 1 2 3 27 27 H 1.08996 * 109.47467 * 178.31006 * 1 2 3 28 28 H 1.08993 * 111.00390 * 324.20427 * 4 2 1 29 29 H 1.09003 * 111.00294 * 88.06199 * 4 2 1 30 30 H 1.09001 * 109.47237 * 304.73935 * 7 5 4 31 31 H 1.08998 * 109.47458 * 64.73525 * 7 5 4 32 32 H 1.09000 * 109.47256 * 184.73772 * 7 5 4 33 33 H 1.09001 * 109.47436 * 294.48138 * 12 9 8 34 34 H 1.09003 * 109.47554 * 54.48333 * 12 9 8 35 35 H 0.97002 * 119.99808 * 185.02785 * 17 16 14 36 36 H 1.08999 * 117.49714 * 359.97438 * 22 13 12 37 37 H 1.09000 * 117.49633 * 145.01558 * 22 13 12 38 38 H 1.09007 * 117.49756 * 214.97394 * 23 13 12 39 39 H 1.08993 * 117.50429 * 359.97438 * 23 13 12 40 40 H 1.09003 * 109.88497 * 120.70130 * 24 8 5 41 41 H 1.09003 * 109.88329 * 241.86990 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0789 -0.7974 -1.2125 5 6 3.4665 -1.2467 -0.6841 6 1 4.1947 -0.4427 -0.7921 7 6 3.9390 -2.4980 -1.4269 8 7 3.2444 -1.5494 0.7415 9 16 4.1633 -2.5713 1.6657 10 8 5.4364 -2.5653 1.0345 11 8 4.0006 -2.0865 2.9914 12 6 3.3673 -4.1904 1.4779 13 6 4.2090 -5.2572 2.1811 14 6 4.3111 -5.1218 3.6785 15 1 5.1547 -4.6104 4.1182 16 6 3.3276 -5.6507 4.4871 17 7 2.2283 -6.1368 3.9534 18 14 3.5565 -5.6769 6.3409 19 1 3.7218 -4.2878 6.8389 20 1 2.3652 -6.2933 6.9781 21 1 4.7647 -6.4711 6.6792 22 6 5.4311 -5.7976 1.4357 23 6 4.1856 -6.6722 1.5996 24 6 2.0760 -0.7892 1.2086 25 1 -0.3634 0.4874 0.9047 26 1 -0.3633 0.5399 -0.8744 27 1 -0.3634 -1.0272 -0.0303 28 1 1.4452 -1.6559 -1.4347 29 1 2.1849 -0.1552 -2.0868 30 1 3.1820 -3.2778 -1.3432 31 1 4.0985 -2.2580 -2.4781 32 1 4.8730 -2.8497 -0.9888 33 1 2.3729 -4.1604 1.9232 34 1 3.2838 -4.4336 0.4186 35 1 1.5059 -6.4419 4.5242 36 1 5.6352 -5.3934 0.4442 37 1 6.3087 -6.0554 2.0285 38 1 4.2444 -7.5052 2.3002 39 1 3.5702 -6.8434 0.7165 40 1 1.3129 -1.4732 1.5800 41 1 2.3741 -0.0991 1.9979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336270576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = -76.619520 kcal Electronic energy + Delta-G solvation = -22459.888104 eV Core-core repulsion = 19273.476580 eV Total energy + Delta-G solvation = -3186.411524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88751 -38.60687 -38.04080 -36.82144 -34.11874 -33.84952 -32.05179 -29.91794 -27.82922 -27.43093 -26.18514 -23.02728 -22.53412 -21.30894 -21.15164 -19.71033 -18.52361 -18.20890 -17.40289 -16.89736 -16.62695 -16.32526 -15.64635 -15.25183 -15.08906 -14.75998 -14.46908 -13.94388 -13.78378 -13.73594 -13.68740 -13.32427 -13.16353 -12.96202 -12.88087 -12.86730 -12.70621 -12.64449 -12.43926 -12.24228 -12.07809 -11.93630 -11.68882 -11.57615 -11.54172 -11.33129 -10.90550 -10.58034 -10.16388 -9.72798 -8.22138 -6.37158 -0.57475 1.36515 1.38545 1.45804 1.93050 2.37347 2.96149 3.04108 3.22255 3.36027 3.56010 3.75170 3.93016 3.99605 4.18434 4.27505 4.36798 4.42685 4.47745 4.55738 4.64135 4.68412 4.74732 4.80673 4.82983 4.91464 4.94630 5.08144 5.08852 5.17643 5.19656 5.27755 5.36684 5.40691 5.44089 5.52945 5.56225 5.65287 5.68282 6.19334 6.68427 7.34955 8.84786 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.006326 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.613664 B = 4425.066805 C = 4980.685600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.113 4.113 5 C 0.139 3.861 6 H 0.078 0.922 7 C -0.201 4.201 8 N -1.018 6.018 9 S 2.633 3.367 10 O -0.984 6.984 11 O -0.997 6.997 12 C -0.546 4.546 13 C 0.009 3.991 14 C -0.538 4.538 15 H 0.046 0.954 16 C 0.042 3.958 17 N -0.892 5.892 18 Si 0.935 3.065 19 H -0.279 1.279 20 H -0.271 1.271 21 H -0.266 1.266 22 C -0.195 4.195 23 C -0.137 4.137 24 C 0.109 3.891 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 9.989 -13.375 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.114 0.886 4 C -0.152 4.152 5 C 0.034 3.966 6 H 0.096 0.904 7 C -0.258 4.258 8 N -0.857 5.857 9 S 2.733 3.267 10 O -0.975 6.975 11 O -0.988 6.988 12 C -0.679 4.679 13 C 0.007 3.993 14 C -0.575 4.575 15 H 0.065 0.935 16 C -0.161 4.161 17 N -0.528 5.528 18 Si 0.760 3.240 19 H -0.204 1.204 20 H -0.196 1.196 21 H -0.191 1.191 22 C -0.232 4.232 23 C -0.176 4.176 24 C -0.016 4.016 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.938 10.072 -12.760 16.726 hybrid contribution -0.341 -0.688 1.322 1.529 sum -4.278 9.384 -11.438 15.401 Atomic orbital electron populations 1.21766 0.92684 1.02394 1.02960 1.22232 0.97049 0.99315 0.92759 0.88605 1.23022 0.93465 1.00778 0.97886 1.21914 0.99012 0.97743 0.77909 0.90386 1.22580 1.02251 0.97683 1.03323 1.58789 1.45062 1.59381 1.22495 1.04103 0.74152 0.76346 0.72116 1.93430 1.39754 1.87576 1.76713 1.93454 1.86760 1.79567 1.38974 1.29942 1.11805 1.18385 1.07792 1.18415 0.95732 0.92780 0.92417 1.20673 1.08408 1.38194 0.90209 0.93533 1.25538 0.94787 0.93455 1.02325 1.70018 1.05217 1.40972 1.36558 0.85963 0.78458 0.78492 0.81096 1.20419 1.19568 1.19054 1.23242 0.92602 1.06154 1.01200 1.22510 0.99552 0.94513 1.00990 1.22018 0.86453 0.94759 0.98360 0.92265 0.90200 0.92722 0.89831 0.87206 0.91405 0.87542 0.92134 0.86562 0.85182 0.92468 0.88223 0.89899 0.91457 0.89325 0.92102 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.13 71.98 0.66 -1.42 16 2 C -0.09 -1.71 3.54 -9.60 -0.03 -1.75 16 3 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 4 C -0.11 -1.87 5.96 32.06 0.19 -1.68 16 5 C 0.14 3.36 3.62 45.54 0.17 3.53 16 6 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 7 C -0.20 -4.68 8.60 71.98 0.62 -4.06 16 8 N -1.02 -32.85 3.50 -483.98 -1.70 -34.55 16 9 S 2.63 113.37 4.80 -56.49 -0.27 113.10 16 10 O -0.98 -44.08 15.52 -127.65 -1.98 -46.06 16 11 O -1.00 -51.79 17.23 -127.65 -2.20 -53.99 16 12 C -0.55 -23.59 6.03 71.98 0.43 -23.16 16 13 C 0.01 0.44 1.32 -52.92 -0.07 0.37 16 14 C -0.54 -30.66 8.15 25.60 0.21 -30.45 16 15 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 16 C 0.04 2.35 5.38 84.65 0.46 2.81 16 17 N -0.89 -49.99 12.98 21.44 0.28 -49.71 16 18 Si 0.94 44.81 29.55 68.60 2.03 46.83 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.19 -8.51 9.96 30.62 0.30 -8.21 16 23 C -0.14 -6.21 9.49 30.62 0.29 -5.92 16 24 C 0.11 3.06 6.49 86.73 0.56 3.62 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 28 H 0.08 1.33 7.95 -2.39 -0.02 1.31 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.50 7.16 -2.39 -0.02 1.48 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.77 5.87 -2.39 -0.01 1.76 16 33 H 0.12 5.37 8.14 -2.39 -0.02 5.35 16 34 H 0.13 4.60 6.76 -2.39 -0.02 4.59 16 35 H 0.27 14.16 8.32 -92.71 -0.77 13.39 16 36 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 37 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 38 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 39 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.06 1.73 7.82 -2.39 -0.02 1.71 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.77 340.13 0.93 -69.84 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.99 Total: 20.86 kcal Atomic # 6 Polarization: -70.10 SS G_CDS: 3.79 Total: -66.32 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.42 Total: -84.26 kcal Atomic # 8 Polarization: -95.87 SS G_CDS: -4.18 Total: -100.05 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 113.37 SS G_CDS: -0.27 Total: 113.10 kcal Total: -70.77 0.93 -69.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336270576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.783 kcal (2) G-P(sol) polarization free energy of solvation -70.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds