Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.88762 * 2 1 4 4 C 1.55548 * 110.99667 * 123.90823 * 2 1 3 5 5 C 1.54324 * 102.75926 * 153.61638 * 4 2 1 6 6 H 1.09005 * 109.87644 * 218.26231 * 5 4 2 7 7 C 1.52994 * 109.88546 * 97.25368 * 5 4 2 8 8 N 1.47016 * 107.40041 * 337.75423 * 5 4 2 9 9 S 1.65601 * 125.64848 * 179.05758 * 8 5 4 10 10 O 1.42101 * 104.28071 * 206.07322 * 9 8 5 11 11 O 1.42108 * 104.27701 * 333.92942 * 9 8 5 12 12 C 1.81397 * 104.45137 * 89.99961 * 9 8 5 13 13 C 1.52998 * 109.47328 * 174.01129 * 12 9 8 14 14 C 1.50707 * 115.54883 * 65.27822 * 13 12 9 15 15 H 1.07999 * 119.99764 * 268.54395 * 14 13 12 16 16 C 1.37877 * 120.00001 * 88.54534 * 14 13 12 17 17 N 1.31516 * 119.99599 * 174.70125 * 16 14 13 18 18 Si 1.86795 * 119.99995 * 354.70104 * 16 14 13 19 19 H 1.48505 * 109.47216 * 92.55429 * 18 16 14 20 20 H 1.48503 * 109.47117 * 212.55198 * 18 16 14 21 21 H 1.48496 * 109.47419 * 332.55141 * 18 16 14 22 22 C 1.52993 * 117.50179 * 279.60944 * 13 12 9 23 23 C 1.53001 * 117.50159 * 210.94584 * 13 12 9 24 24 C 1.47424 * 108.70332 * 359.02082 * 8 5 4 25 25 H 1.09007 * 109.47125 * 182.43049 * 1 2 3 26 26 H 1.08997 * 109.47205 * 302.42795 * 1 2 3 27 27 H 1.08996 * 109.47137 * 62.43328 * 1 2 3 28 28 H 1.08996 * 110.78660 * 35.32056 * 4 2 1 29 29 H 1.09009 * 110.82996 * 271.92768 * 4 2 1 30 30 H 1.09005 * 109.46950 * 301.71100 * 7 5 4 31 31 H 1.09004 * 109.47038 * 181.71792 * 7 5 4 32 32 H 1.08999 * 109.47483 * 61.71614 * 7 5 4 33 33 H 1.08996 * 109.47252 * 294.01341 * 12 9 8 34 34 H 1.09004 * 109.46950 * 54.01447 * 12 9 8 35 35 H 0.97001 * 119.99680 * 179.97438 * 17 16 14 36 36 H 1.09000 * 117.50040 * 359.97438 * 22 13 12 37 37 H 1.09005 * 117.50291 * 145.02034 * 22 13 12 38 38 H 1.09004 * 117.49724 * 214.97878 * 23 13 12 39 39 H 1.08996 * 117.49486 * 359.97438 * 23 13 12 40 40 H 1.09002 * 110.36394 * 142.96748 * 24 8 5 41 41 H 1.09004 * 110.36740 * 265.17381 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0874 -0.8101 1.2052 5 6 3.4683 -1.2732 0.6952 6 1 3.6692 -2.2879 1.0391 7 6 4.5560 -0.3262 1.2058 8 7 3.4275 -1.2420 -0.7740 9 16 4.6812 -1.6327 -1.7829 10 8 4.4179 -0.8976 -2.9702 11 8 5.8458 -1.3807 -1.0085 12 6 4.4864 -3.4116 -2.0793 13 6 5.5061 -3.8693 -3.1241 14 6 6.9514 -3.7711 -2.7084 15 1 7.5153 -2.8753 -2.9229 16 6 7.5537 -4.8248 -2.0542 17 7 8.8402 -4.7821 -1.7842 18 14 6.5426 -6.3129 -1.5516 19 1 6.6039 -7.3382 -2.6241 20 1 7.0889 -6.8802 -0.2927 21 1 5.1313 -5.9033 -1.3384 22 6 5.1751 -3.6104 -4.5951 23 6 5.1106 -5.0334 -4.0347 24 6 2.0852 -0.8063 -1.2005 25 1 -0.3634 -1.0268 0.0436 26 1 -0.3633 0.5511 0.8674 27 1 -0.3633 0.4756 -0.9110 28 1 1.4497 -1.6667 1.4235 29 1 2.1943 -0.1738 2.0838 30 1 4.3421 0.6882 0.8688 31 1 5.5243 -0.6416 0.8169 32 1 4.5767 -0.3503 2.2953 33 1 4.6507 -3.9551 -1.1488 34 1 3.4786 -3.6111 -2.4435 35 1 9.2639 -5.5233 -1.3237 36 1 4.2306 -3.1144 -4.8187 37 1 6.0026 -3.3694 -5.2625 38 1 5.8958 -5.7280 -4.3335 39 1 4.1241 -5.4734 -3.8892 40 1 2.1554 -0.1715 -2.0839 41 1 1.4528 -1.6703 -1.4045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336270577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = -48.888535 kcal Electronic energy + Delta-G solvation = -22382.321515 eV Core-core repulsion = 19197.112497 eV Total energy + Delta-G solvation = -3185.209018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.96064 -37.13095 -36.38728 -35.15813 -32.82371 -32.16707 -31.01352 -28.49590 -26.81776 -25.59248 -25.25107 -21.74427 -21.42554 -20.43396 -19.35823 -18.25185 -17.04726 -16.68313 -16.02931 -15.40363 -15.18590 -14.69709 -14.21014 -13.91465 -13.57892 -13.46177 -13.20429 -12.97307 -12.86280 -12.60594 -12.36342 -12.32831 -11.98901 -11.68479 -11.40830 -11.24080 -11.21410 -11.02641 -10.94420 -10.83907 -10.65822 -10.57721 -10.39149 -10.24238 -10.05418 -9.73616 -9.16446 -8.88254 -8.66541 -8.40611 -6.17414 -4.24686 0.90121 3.21630 3.26944 3.31434 3.34405 4.33582 4.35063 4.46461 4.52818 4.74012 4.80425 4.90390 5.07042 5.14514 5.27463 5.31702 5.36356 5.48480 5.51624 5.60144 5.66493 5.72388 5.76081 5.82550 5.92188 5.94181 5.97002 6.02966 6.16255 6.19537 6.24518 6.41678 6.42249 6.63057 6.72748 6.76655 6.88635 7.05568 7.59223 8.36501 8.87887 9.43917 10.94082 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.006115 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.285893 B = 4577.890511 C = 4855.331442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.121 4.121 5 C 0.149 3.851 6 H 0.071 0.929 7 C -0.187 4.187 8 N -1.019 6.019 9 S 2.628 3.372 10 O -0.965 6.965 11 O -0.932 6.932 12 C -0.577 4.577 13 C 0.001 3.999 14 C -0.509 4.509 15 H 0.087 0.913 16 C 0.089 3.911 17 N -0.882 5.882 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.257 1.257 22 C -0.177 4.177 23 C -0.185 4.185 24 C 0.118 3.882 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.267 0.733 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 5.758 5.289 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.160 4.160 5 C 0.042 3.958 6 H 0.089 0.911 7 C -0.246 4.246 8 N -0.855 5.855 9 S 2.725 3.275 10 O -0.955 6.955 11 O -0.922 6.922 12 C -0.708 4.708 13 C -0.002 4.002 14 C -0.545 4.545 15 H 0.105 0.895 16 C -0.116 4.116 17 N -0.518 5.518 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.182 1.182 22 C -0.214 4.214 23 C -0.224 4.224 24 C -0.007 4.007 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.970 6.259 5.010 17.869 hybrid contribution -0.836 -1.651 0.461 1.907 sum -16.806 4.608 5.471 18.265 Atomic orbital electron populations 1.21711 0.94183 1.02062 1.01941 1.22402 0.95560 0.99590 0.94677 0.89799 1.22861 0.95322 0.99916 0.97879 1.21229 0.95838 0.99420 0.79270 0.91103 1.22598 1.01517 0.99569 1.00874 1.59145 1.27057 1.82948 1.16346 1.04660 0.72291 0.77547 0.72958 1.93493 1.84753 1.69472 1.47803 1.93520 1.45490 1.84089 1.69102 1.30348 1.06127 1.24727 1.09595 1.18871 0.94203 1.00479 0.86633 1.20335 0.90887 1.04329 1.38994 0.89522 1.24938 0.94472 0.97969 0.94175 1.69897 1.09765 1.32260 1.39833 0.86935 0.81596 0.83264 0.78148 1.20108 1.21665 1.18156 1.23023 1.01902 0.98450 0.98050 1.22986 1.00829 0.91860 1.06723 1.22035 0.82894 0.97934 0.97852 0.92400 0.92354 0.92320 0.90815 0.90262 0.92648 0.88207 0.92108 0.85674 0.87796 0.92292 0.90057 0.88603 0.88894 0.90709 0.90086 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.30 37.16 0.35 -0.71 16 2 C -0.10 -1.01 3.65 -88.26 -0.32 -1.33 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.19 5.99 -24.68 -0.15 -1.34 16 5 C 0.15 1.99 3.68 -66.96 -0.25 1.75 16 6 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.19 -2.66 8.96 37.15 0.33 -2.33 16 8 N -1.02 -15.67 3.34 -104.43 -0.35 -16.02 16 9 S 2.63 52.81 5.37 -107.50 -0.58 52.24 16 10 O -0.96 -20.97 17.28 -57.54 -0.99 -21.96 16 11 O -0.93 -21.87 14.52 -57.54 -0.84 -22.71 16 12 C -0.58 -11.54 5.65 37.16 0.21 -11.33 16 13 C 0.00 0.02 0.79 -155.66 -0.12 -0.10 16 14 C -0.51 -14.29 8.77 -34.44 -0.30 -14.59 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 16 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 17 N -0.88 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.87 21.12 24.96 -169.99 -4.24 16.87 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.26 -5.74 5.68 56.52 0.32 -5.42 16 22 C -0.18 -3.70 9.96 -26.70 -0.27 -3.97 16 23 C -0.19 -3.89 7.67 -26.69 -0.20 -4.09 16 24 C 0.12 1.46 6.54 -2.53 -0.02 1.45 16 25 H 0.06 0.41 8.12 -51.92 -0.42 -0.01 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 29 H 0.08 0.67 7.83 -51.92 -0.41 0.26 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.77 5.49 -51.93 -0.29 1.49 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.13 2.49 6.53 -51.93 -0.34 2.15 16 34 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 38 H 0.09 2.02 7.34 -51.93 -0.38 1.64 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -33.35 332.53 -8.98 -42.33 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.93 Total: 4.37 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: -0.84 Total: -34.13 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.42 Total: -42.02 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.83 Total: -44.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.24 Total: 16.87 kcal Atomic # 16 Polarization: 52.81 SS G_CDS: -0.58 Total: 52.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.35 -8.98 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336270577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds