Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.88762 * 2 1 4 4 C 1.55548 * 110.99667 * 123.90823 * 2 1 3 5 5 C 1.54324 * 102.75926 * 153.61638 * 4 2 1 6 6 H 1.09005 * 109.87644 * 218.26231 * 5 4 2 7 7 C 1.52994 * 109.88546 * 97.25368 * 5 4 2 8 8 N 1.47016 * 107.40041 * 337.75423 * 5 4 2 9 9 S 1.65601 * 125.64848 * 179.05758 * 8 5 4 10 10 O 1.42101 * 104.28071 * 206.07322 * 9 8 5 11 11 O 1.42108 * 104.27701 * 333.92942 * 9 8 5 12 12 C 1.81397 * 104.45137 * 89.99961 * 9 8 5 13 13 C 1.52998 * 109.47328 * 174.01129 * 12 9 8 14 14 C 1.50707 * 115.54883 * 65.27822 * 13 12 9 15 15 H 1.07999 * 119.99764 * 268.54395 * 14 13 12 16 16 C 1.37877 * 120.00001 * 88.54534 * 14 13 12 17 17 N 1.31516 * 119.99599 * 174.70125 * 16 14 13 18 18 Si 1.86795 * 119.99995 * 354.70104 * 16 14 13 19 19 H 1.48505 * 109.47216 * 92.55429 * 18 16 14 20 20 H 1.48503 * 109.47117 * 212.55198 * 18 16 14 21 21 H 1.48496 * 109.47419 * 332.55141 * 18 16 14 22 22 C 1.52993 * 117.50179 * 279.60944 * 13 12 9 23 23 C 1.53001 * 117.50159 * 210.94584 * 13 12 9 24 24 C 1.47424 * 108.70332 * 359.02082 * 8 5 4 25 25 H 1.09007 * 109.47125 * 182.43049 * 1 2 3 26 26 H 1.08997 * 109.47205 * 302.42795 * 1 2 3 27 27 H 1.08996 * 109.47137 * 62.43328 * 1 2 3 28 28 H 1.08996 * 110.78660 * 35.32056 * 4 2 1 29 29 H 1.09009 * 110.82996 * 271.92768 * 4 2 1 30 30 H 1.09005 * 109.46950 * 301.71100 * 7 5 4 31 31 H 1.09004 * 109.47038 * 181.71792 * 7 5 4 32 32 H 1.08999 * 109.47483 * 61.71614 * 7 5 4 33 33 H 1.08996 * 109.47252 * 294.01341 * 12 9 8 34 34 H 1.09004 * 109.46950 * 54.01447 * 12 9 8 35 35 H 0.97001 * 119.99680 * 179.97438 * 17 16 14 36 36 H 1.09000 * 117.50040 * 359.97438 * 22 13 12 37 37 H 1.09005 * 117.50291 * 145.02034 * 22 13 12 38 38 H 1.09004 * 117.49724 * 214.97878 * 23 13 12 39 39 H 1.08996 * 117.49486 * 359.97438 * 23 13 12 40 40 H 1.09002 * 110.36394 * 142.96748 * 24 8 5 41 41 H 1.09004 * 110.36740 * 265.17381 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0874 -0.8101 1.2052 5 6 3.4683 -1.2732 0.6952 6 1 3.6692 -2.2879 1.0391 7 6 4.5560 -0.3262 1.2058 8 7 3.4275 -1.2420 -0.7740 9 16 4.6812 -1.6327 -1.7829 10 8 4.4179 -0.8976 -2.9702 11 8 5.8458 -1.3807 -1.0085 12 6 4.4864 -3.4116 -2.0793 13 6 5.5061 -3.8693 -3.1241 14 6 6.9514 -3.7711 -2.7084 15 1 7.5153 -2.8753 -2.9229 16 6 7.5537 -4.8248 -2.0542 17 7 8.8402 -4.7821 -1.7842 18 14 6.5426 -6.3129 -1.5516 19 1 6.6039 -7.3382 -2.6241 20 1 7.0889 -6.8802 -0.2927 21 1 5.1313 -5.9033 -1.3384 22 6 5.1751 -3.6104 -4.5951 23 6 5.1106 -5.0334 -4.0347 24 6 2.0852 -0.8063 -1.2005 25 1 -0.3634 -1.0268 0.0436 26 1 -0.3633 0.5511 0.8674 27 1 -0.3633 0.4756 -0.9110 28 1 1.4497 -1.6667 1.4235 29 1 2.1943 -0.1738 2.0838 30 1 4.3421 0.6882 0.8688 31 1 5.5243 -0.6416 0.8169 32 1 4.5767 -0.3503 2.2953 33 1 4.6507 -3.9551 -1.1488 34 1 3.4786 -3.6111 -2.4435 35 1 9.2639 -5.5233 -1.3237 36 1 4.2306 -3.1144 -4.8187 37 1 6.0026 -3.3694 -5.2625 38 1 5.8958 -5.7280 -4.3335 39 1 4.1241 -5.4734 -3.8892 40 1 2.1554 -0.1715 -2.0839 41 1 1.4528 -1.6703 -1.4045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336270577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -72.778341 kcal Electronic energy + Delta-G solvation = -22383.357455 eV Core-core repulsion = 19197.112497 eV Total energy + Delta-G solvation = -3186.244958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91749 -38.87760 -38.04349 -36.82063 -34.31871 -33.68298 -32.08738 -30.11101 -27.68823 -27.55745 -26.27516 -23.39295 -22.52671 -21.33063 -21.09843 -19.73581 -18.59187 -18.38376 -17.21446 -16.97662 -16.84016 -16.29066 -15.61606 -15.29174 -14.85696 -14.75830 -14.54854 -14.23566 -14.03318 -13.96996 -13.85736 -13.40777 -13.23554 -12.97455 -12.89552 -12.72862 -12.70753 -12.49134 -12.40748 -12.14111 -12.08103 -11.78373 -11.71409 -11.65895 -11.38871 -11.23462 -10.99781 -10.75446 -10.37811 -9.83339 -8.34458 -6.47628 -0.63099 1.33126 1.34620 1.47988 1.91349 2.33408 2.90519 2.97943 3.13178 3.21468 3.54697 3.74698 3.81670 4.00155 4.13458 4.22928 4.29106 4.33691 4.41867 4.52976 4.53682 4.59496 4.66624 4.81609 4.84597 4.85873 4.95063 4.99434 5.02214 5.12916 5.17654 5.22271 5.33007 5.39549 5.41257 5.51861 5.56502 5.59111 5.66707 6.17125 6.63323 7.24902 8.81963 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.006115 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.285893 B = 4577.890511 C = 4855.331442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.109 4.109 5 C 0.136 3.864 6 H 0.076 0.924 7 C -0.190 4.190 8 N -1.015 6.015 9 S 2.629 3.371 10 O -0.991 6.991 11 O -0.982 6.982 12 C -0.571 4.571 13 C -0.034 4.034 14 C -0.513 4.513 15 H 0.027 0.973 16 C 0.027 3.973 17 N -0.941 5.941 18 Si 0.934 3.066 19 H -0.261 1.261 20 H -0.293 1.293 21 H -0.218 1.218 22 C -0.174 4.174 23 C -0.167 4.167 24 C 0.106 3.894 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.269 0.731 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.681 4.335 6.180 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.148 4.148 5 C 0.031 3.969 6 H 0.094 0.906 7 C -0.248 4.248 8 N -0.854 5.854 9 S 2.729 3.271 10 O -0.982 6.982 11 O -0.972 6.972 12 C -0.703 4.703 13 C -0.036 4.036 14 C -0.550 4.550 15 H 0.045 0.955 16 C -0.173 4.173 17 N -0.579 5.579 18 Si 0.756 3.244 19 H -0.186 1.186 20 H -0.220 1.220 21 H -0.140 1.140 22 C -0.211 4.211 23 C -0.206 4.206 24 C -0.019 4.019 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.087 0.913 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.795 4.867 5.874 22.150 hybrid contribution 0.718 -1.061 0.146 1.290 sum -20.078 3.805 6.020 21.303 Atomic orbital electron populations 1.21686 0.91864 1.03016 1.02766 1.22414 0.97270 0.98764 0.93357 0.90514 1.22869 0.92836 1.00949 0.98142 1.21547 0.97822 0.99611 0.77966 0.90603 1.22589 0.99891 0.99810 1.02537 1.58729 1.27260 1.82547 1.16867 1.04195 0.72350 0.77956 0.72610 1.93445 1.85225 1.70310 1.49189 1.93482 1.48770 1.84932 1.70027 1.30200 1.07491 1.23846 1.08785 1.18796 0.92237 1.03983 0.88619 1.20430 0.93666 1.02160 1.38773 0.95451 1.25944 0.95510 1.01732 0.94064 1.70069 1.12227 1.33812 1.41787 0.85963 0.81747 0.78853 0.77832 1.18610 1.21987 1.14006 1.23097 1.02717 0.99299 0.96011 1.23093 1.02443 0.91113 1.03933 1.22414 0.81509 0.99285 0.98665 0.91393 0.91057 0.92027 0.88590 0.88541 0.92657 0.92435 0.89464 0.85309 0.83053 0.92220 0.87072 0.90153 0.90109 0.86403 0.91254 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.30 71.98 0.67 -0.77 16 2 C -0.10 -1.59 3.65 -9.26 -0.03 -1.63 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -1.71 5.99 31.92 0.19 -1.52 16 5 C 0.14 3.38 3.68 45.34 0.17 3.55 16 6 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 7 C -0.19 -5.36 8.96 71.98 0.64 -4.72 16 8 N -1.02 -29.65 3.34 -484.29 -1.62 -31.27 16 9 S 2.63 106.23 5.37 -56.49 -0.30 105.93 16 10 O -0.99 -43.53 17.28 -127.65 -2.21 -45.74 16 11 O -0.98 -48.85 14.52 -127.65 -1.85 -50.70 16 12 C -0.57 -21.39 5.65 71.98 0.41 -20.98 16 13 C -0.03 -1.54 0.79 -52.93 -0.04 -1.58 16 14 C -0.51 -30.02 8.77 25.60 0.22 -29.79 16 15 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 16 C 0.03 1.56 5.47 84.65 0.46 2.02 16 17 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 18 Si 0.93 42.62 24.96 68.60 1.71 44.33 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.22 -8.49 5.68 99.48 0.57 -7.92 16 22 C -0.17 -7.00 9.96 30.62 0.30 -6.69 16 23 C -0.17 -6.44 7.67 30.62 0.23 -6.20 16 24 C 0.11 2.31 6.54 86.85 0.57 2.88 16 25 H 0.07 0.61 8.12 -2.38 -0.02 0.59 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 1.14 8.02 -2.39 -0.02 1.12 16 29 H 0.10 1.22 7.83 -2.38 -0.02 1.21 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 2.15 5.49 -2.38 -0.01 2.14 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.13 4.73 6.53 -2.39 -0.02 4.71 16 34 H 0.15 4.16 8.09 -2.39 -0.02 4.14 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 38 H 0.08 3.31 7.34 -2.38 -0.02 3.29 16 39 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.07 1.67 7.67 -2.39 -0.02 1.65 16 41 H 0.09 1.47 8.04 -2.38 -0.02 1.45 16 Total: -1.00 -78.93 332.53 0.68 -78.25 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.85 Total: 24.47 kcal Atomic # 6 Polarization: -69.24 SS G_CDS: 3.80 Total: -65.44 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -1.32 Total: -91.09 kcal Atomic # 8 Polarization: -92.39 SS G_CDS: -4.06 Total: -96.45 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.71 Total: 44.33 kcal Atomic # 16 Polarization: 106.23 SS G_CDS: -0.30 Total: 105.93 kcal Total: -78.93 0.68 -78.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336270577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.472 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds