Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.66385 * 2 1 4 4 C 1.51315 * 110.60728 * 237.06617 * 2 1 3 5 5 O 1.21227 * 125.39685 * 61.74551 * 4 2 1 6 6 N 1.33878 * 109.20912 * 241.48306 * 4 2 1 7 7 C 1.46499 * 122.76603 * 179.97438 * 6 4 2 8 8 C 1.50707 * 109.46506 * 90.00290 * 7 6 4 9 9 C 1.38640 * 119.74829 * 269.72252 * 8 7 6 10 10 C 1.37614 * 120.24547 * 179.76847 * 9 8 7 11 11 C 1.40715 * 119.74795 * 0.48859 * 10 9 8 12 12 C 1.41393 * 120.24532 * 179.79120 * 11 10 9 13 13 H 1.07996 * 120.00244 * 24.37018 * 12 11 10 14 14 C 1.39945 * 119.99779 * 204.36704 * 12 11 10 15 15 N 1.30818 * 120.00309 * 17.85174 * 14 12 11 16 16 Si 1.86801 * 119.99835 * 197.85589 * 14 12 11 17 17 H 1.48499 * 109.47235 * 60.00155 * 16 14 12 18 18 H 1.48497 * 109.47241 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 299.99913 * 16 14 12 20 20 C 1.40718 * 119.51041 * 359.76949 * 11 10 9 21 21 C 1.37624 * 119.74493 * 359.97438 * 20 11 10 22 22 C 1.33879 * 114.47417 * 359.97438 * 6 4 2 23 23 O 1.21223 * 125.39884 * 180.02562 * 22 6 4 24 24 C 1.51312 * 109.20741 * 359.97438 * 22 6 4 25 25 H 1.08999 * 110.60767 * 118.67133 * 24 22 6 26 26 C 1.52998 * 110.60952 * 241.48171 * 24 22 6 27 27 H 1.08999 * 109.47206 * 181.48035 * 1 2 3 28 28 H 1.08997 * 109.47309 * 301.47957 * 1 2 3 29 29 H 1.08995 * 109.47089 * 61.47858 * 1 2 3 30 30 H 1.08996 * 109.47186 * 210.00210 * 7 6 4 31 31 H 1.08996 * 109.46986 * 330.00878 * 7 6 4 32 32 H 1.08002 * 119.87196 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.12512 * 180.28047 * 10 9 8 34 34 H 0.97000 * 120.00494 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.12706 * 180.02562 * 20 11 10 36 36 H 1.07994 * 119.87606 * 179.97438 * 21 20 11 37 37 H 1.09003 * 109.47007 * 58.54299 * 26 24 22 38 38 H 1.08995 * 109.47418 * 178.54291 * 26 24 22 39 39 H 1.09004 * 109.47483 * 298.54944 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0625 -0.7700 -1.1887 5 8 1.8718 -0.4863 -2.3518 6 7 2.7825 -1.8110 -0.7525 7 6 3.4367 -2.7579 -1.6589 8 6 4.8298 -2.2745 -1.9701 9 6 5.0428 -1.4461 -3.0613 10 6 6.3098 -0.9948 -3.3521 11 6 7.3930 -1.3855 -2.5432 12 6 8.6999 -0.9316 -2.8350 13 1 8.8423 -0.0167 -3.3908 14 6 9.8089 -1.6680 -2.4035 15 7 9.6660 -2.9193 -2.0499 16 14 11.4936 -0.8640 -2.3322 17 1 11.4500 0.2953 -1.4052 18 1 12.4921 -1.8492 -1.8451 19 1 11.8778 -0.3986 -3.6891 20 6 7.1658 -2.2310 -1.4415 21 6 5.8894 -2.6659 -1.1663 22 6 2.8554 -1.9155 0.5802 23 8 3.4533 -2.7791 1.1852 24 6 2.0741 -0.7839 1.2117 25 1 1.2558 -1.1737 1.8170 26 6 2.9938 0.0994 2.0572 27 1 -0.3633 -1.0273 0.0265 28 1 -0.3634 0.5366 0.8764 29 1 -0.3633 0.4907 -0.9029 30 1 3.4897 -3.7377 -1.1843 31 1 2.8631 -2.8322 -2.5827 32 1 4.2105 -1.1506 -3.6828 33 1 6.4728 -0.3459 -4.1999 34 1 10.4347 -3.4299 -1.7512 35 1 7.9897 -2.5367 -0.8138 36 1 5.7126 -3.3151 -0.3216 37 1 3.7906 0.4993 1.4301 38 1 2.4181 0.9218 2.4816 39 1 3.4280 -0.4937 2.8621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336372097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = -60.973930 kcal Electronic energy + Delta-G solvation = -22615.436733 eV Core-core repulsion = 19294.259701 eV Total energy + Delta-G solvation = -3321.177032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82782 -38.33670 -37.63659 -35.89819 -35.03885 -33.59991 -30.64714 -30.53896 -29.29139 -27.61842 -25.07238 -24.54759 -23.39950 -21.49596 -20.80947 -20.30463 -19.09665 -17.32788 -16.87919 -16.72588 -15.97853 -15.32102 -14.94067 -14.62633 -14.23055 -14.02960 -13.78968 -13.64737 -13.62786 -13.41653 -12.62877 -12.53519 -12.45527 -11.98621 -11.91266 -11.72280 -11.61405 -11.54318 -11.33208 -11.15721 -11.07965 -10.79812 -10.53298 -10.10339 -9.92154 -9.69739 -9.42059 -9.16944 -9.13505 -7.49649 -7.38884 -6.81934 -4.41576 1.73075 2.47130 2.91742 3.00333 3.03467 3.06305 3.07699 3.29463 3.88673 4.00523 4.26070 4.31120 4.57597 4.65632 5.01761 5.14470 5.17707 5.45574 5.51813 5.61352 5.62279 5.63203 5.70512 5.78420 5.86680 5.95958 6.03204 6.21052 6.38488 6.40130 6.93924 7.01387 7.12233 7.26818 7.33915 7.57158 7.59335 7.81099 8.00952 8.05708 8.08809 8.25844 8.59727 8.83848 8.92757 10.12011 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.004226 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.789603 B = 6624.254119 C = 6885.763538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 H 0.122 0.878 4 C 0.530 3.470 5 O -0.482 6.482 6 N -0.562 5.562 7 C 0.161 3.839 8 C -0.251 4.251 9 C -0.065 4.065 10 C -0.232 4.232 11 C 0.118 3.882 12 C -0.460 4.460 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.787 5.787 16 Si 0.909 3.091 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.171 4.171 21 C -0.076 4.076 22 C 0.529 3.471 23 O -0.480 6.480 24 C -0.126 4.126 25 H 0.119 0.881 26 C -0.137 4.137 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.283 0.717 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.369 4.302 7.118 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 H 0.140 0.860 4 C 0.318 3.682 5 O -0.354 6.354 6 N -0.303 5.303 7 C 0.043 3.957 8 C -0.254 4.254 9 C -0.084 4.084 10 C -0.251 4.251 11 C 0.116 3.884 12 C -0.489 4.489 13 H 0.097 0.903 14 C -0.143 4.143 15 N -0.411 5.411 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.191 4.191 21 C -0.095 4.095 22 C 0.317 3.683 23 O -0.351 6.351 24 C -0.147 4.147 25 H 0.137 0.863 26 C -0.194 4.194 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.995 3.716 6.855 15.155 hybrid contribution 0.961 0.196 -0.085 0.984 sum -12.035 3.912 6.770 14.352 Atomic orbital electron populations 1.21655 0.91198 1.02842 1.03440 1.22215 0.98841 1.01544 0.92341 0.86007 1.20678 0.76885 0.80329 0.90306 1.90723 1.57130 1.68258 1.19242 1.47165 1.46129 1.27738 1.09247 1.20454 0.92288 0.90648 0.92314 1.19042 0.92510 1.10930 1.02878 1.20460 0.95974 0.96222 0.95751 1.20955 0.93186 1.08817 1.02176 1.17674 0.92451 0.89157 0.89164 1.19623 0.90266 1.07919 1.31051 0.90348 1.25947 1.01643 0.94099 0.92562 1.69818 1.33196 1.07137 1.30996 0.86350 0.80480 0.80001 0.79824 1.18758 1.20236 1.18915 1.21294 0.95121 1.03488 0.99171 1.20608 0.93103 0.98503 0.97308 1.20701 0.79690 0.85841 0.82092 1.90733 1.40955 1.36812 1.66606 1.22192 0.99906 0.95226 0.97360 0.86266 1.21680 0.98960 0.99018 0.99788 0.92124 0.90880 0.91012 0.89830 0.89904 0.89059 0.88956 0.90650 0.86431 0.89085 0.91602 0.90940 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.10 37.15 0.34 -0.70 16 2 C -0.13 -1.34 3.34 -90.83 -0.30 -1.64 16 3 H 0.12 1.14 7.74 -51.93 -0.40 0.74 16 4 C 0.53 8.13 7.41 -11.08 -0.08 8.04 16 5 O -0.48 -8.76 17.48 5.60 0.10 -8.66 16 6 N -0.56 -9.29 2.54 -116.63 -0.30 -9.58 16 7 C 0.16 2.99 5.67 -5.19 -0.03 2.96 16 8 C -0.25 -5.64 5.49 -104.32 -0.57 -6.22 16 9 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 10 C -0.23 -5.86 9.80 -38.87 -0.38 -6.24 16 11 C 0.12 3.20 5.58 -106.82 -0.60 2.61 16 12 C -0.46 -12.28 9.05 -37.74 -0.34 -12.62 16 13 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 14 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 15 N -0.79 -20.43 10.95 55.55 0.61 -19.82 16 16 Si 0.91 18.64 29.60 -169.99 -5.03 13.60 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.17 -4.55 8.70 -38.87 -0.34 -4.89 16 21 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 22 C 0.53 8.21 7.41 -11.09 -0.08 8.13 16 23 O -0.48 -8.91 17.48 5.61 0.10 -8.82 16 24 C -0.13 -1.32 3.33 -90.83 -0.30 -1.63 16 25 H 0.12 0.96 7.75 -51.93 -0.40 0.55 16 26 C -0.14 -1.33 9.10 37.16 0.34 -0.99 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.49 7.77 -51.93 -0.40 1.09 16 31 H 0.08 1.46 7.77 -51.93 -0.40 1.05 16 32 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.12 3.23 6.16 -52.48 -0.32 2.90 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -30.54 334.19 -7.98 -38.52 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.29 Total: 5.23 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -3.21 Total: -15.51 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.31 Total: -29.41 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.20 Total: -17.48 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.54 -7.98 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336372097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.455 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds