Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.66385 * 2 1 4 4 C 1.51315 * 110.60728 * 237.06617 * 2 1 3 5 5 O 1.21227 * 125.39685 * 61.74551 * 4 2 1 6 6 N 1.33878 * 109.20912 * 241.48306 * 4 2 1 7 7 C 1.46499 * 122.76603 * 179.97438 * 6 4 2 8 8 C 1.50707 * 109.46506 * 90.00290 * 7 6 4 9 9 C 1.38640 * 119.74829 * 269.72252 * 8 7 6 10 10 C 1.37614 * 120.24547 * 179.76847 * 9 8 7 11 11 C 1.40715 * 119.74795 * 0.48859 * 10 9 8 12 12 C 1.41393 * 120.24532 * 179.79120 * 11 10 9 13 13 H 1.07996 * 120.00244 * 24.37018 * 12 11 10 14 14 C 1.39945 * 119.99779 * 204.36704 * 12 11 10 15 15 N 1.30818 * 120.00309 * 17.85174 * 14 12 11 16 16 Si 1.86801 * 119.99835 * 197.85589 * 14 12 11 17 17 H 1.48499 * 109.47235 * 60.00155 * 16 14 12 18 18 H 1.48497 * 109.47241 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 299.99913 * 16 14 12 20 20 C 1.40718 * 119.51041 * 359.76949 * 11 10 9 21 21 C 1.37624 * 119.74493 * 359.97438 * 20 11 10 22 22 C 1.33879 * 114.47417 * 359.97438 * 6 4 2 23 23 O 1.21223 * 125.39884 * 180.02562 * 22 6 4 24 24 C 1.51312 * 109.20741 * 359.97438 * 22 6 4 25 25 H 1.08999 * 110.60767 * 118.67133 * 24 22 6 26 26 C 1.52998 * 110.60952 * 241.48171 * 24 22 6 27 27 H 1.08999 * 109.47206 * 181.48035 * 1 2 3 28 28 H 1.08997 * 109.47309 * 301.47957 * 1 2 3 29 29 H 1.08995 * 109.47089 * 61.47858 * 1 2 3 30 30 H 1.08996 * 109.47186 * 210.00210 * 7 6 4 31 31 H 1.08996 * 109.46986 * 330.00878 * 7 6 4 32 32 H 1.08002 * 119.87196 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.12512 * 180.28047 * 10 9 8 34 34 H 0.97000 * 120.00494 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.12706 * 180.02562 * 20 11 10 36 36 H 1.07994 * 119.87606 * 179.97438 * 21 20 11 37 37 H 1.09003 * 109.47007 * 58.54299 * 26 24 22 38 38 H 1.08995 * 109.47418 * 178.54291 * 26 24 22 39 39 H 1.09004 * 109.47483 * 298.54944 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0625 -0.7700 -1.1887 5 8 1.8718 -0.4863 -2.3518 6 7 2.7825 -1.8110 -0.7525 7 6 3.4367 -2.7579 -1.6589 8 6 4.8298 -2.2745 -1.9701 9 6 5.0428 -1.4461 -3.0613 10 6 6.3098 -0.9948 -3.3521 11 6 7.3930 -1.3855 -2.5432 12 6 8.6999 -0.9316 -2.8350 13 1 8.8423 -0.0167 -3.3908 14 6 9.8089 -1.6680 -2.4035 15 7 9.6660 -2.9193 -2.0499 16 14 11.4936 -0.8640 -2.3322 17 1 11.4500 0.2953 -1.4052 18 1 12.4921 -1.8492 -1.8451 19 1 11.8778 -0.3986 -3.6891 20 6 7.1658 -2.2310 -1.4415 21 6 5.8894 -2.6659 -1.1663 22 6 2.8554 -1.9155 0.5802 23 8 3.4533 -2.7791 1.1852 24 6 2.0741 -0.7839 1.2117 25 1 1.2558 -1.1737 1.8170 26 6 2.9938 0.0994 2.0572 27 1 -0.3633 -1.0273 0.0265 28 1 -0.3634 0.5366 0.8764 29 1 -0.3633 0.4907 -0.9029 30 1 3.4897 -3.7377 -1.1843 31 1 2.8631 -2.8322 -2.5827 32 1 4.2105 -1.1506 -3.6828 33 1 6.4728 -0.3459 -4.1999 34 1 10.4347 -3.4299 -1.7512 35 1 7.9897 -2.5367 -0.8138 36 1 5.7126 -3.3151 -0.3216 37 1 3.7906 0.4993 1.4301 38 1 2.4181 0.9218 2.4816 39 1 3.4280 -0.4937 2.8621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336372097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -77.842084 kcal Electronic energy + Delta-G solvation = -22616.168191 eV Core-core repulsion = 19294.259701 eV Total energy + Delta-G solvation = -3321.908490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.02605 -39.63061 -39.53595 -37.08163 -36.47629 -35.31283 -32.40957 -31.30639 -31.25822 -29.26375 -26.52234 -25.66645 -24.73560 -23.08523 -22.21124 -22.07928 -20.36214 -19.30157 -18.14774 -17.96949 -17.36571 -17.04509 -16.20736 -15.98003 -15.71478 -15.51501 -15.31055 -15.24611 -14.63412 -14.48165 -14.25839 -13.92216 -13.54597 -13.34378 -13.31874 -13.20529 -13.06187 -12.76000 -12.69582 -12.52398 -12.37436 -12.24913 -12.08209 -11.72523 -11.37975 -11.28716 -11.04979 -10.89598 -10.67624 -9.48492 -9.36531 -8.71704 -6.43361 0.52644 0.73920 1.04717 1.34913 1.42202 1.48363 1.72070 1.84471 2.16609 2.66469 3.07208 3.22116 3.41947 3.64251 3.86308 4.03303 4.17814 4.31263 4.34817 4.35877 4.46242 4.47023 4.49783 4.70768 4.88048 4.90893 4.94501 4.97077 5.01433 5.07370 5.25834 5.27322 5.32142 5.35230 5.59989 5.83586 5.89136 6.00793 6.13817 6.28081 6.38017 6.59912 6.80436 6.84574 6.92781 8.25158 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.004226 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.789603 B = 6624.254119 C = 6885.763538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.139 0.861 4 C 0.521 3.479 5 O -0.515 6.515 6 N -0.570 5.570 7 C 0.164 3.836 8 C -0.239 4.239 9 C -0.066 4.066 10 C -0.247 4.247 11 C 0.089 3.911 12 C -0.497 4.497 13 H 0.079 0.921 14 C 0.036 3.964 15 N -0.820 5.820 16 Si 0.986 3.014 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.257 1.257 20 C -0.193 4.193 21 C -0.079 4.079 22 C 0.519 3.481 23 O -0.517 6.517 24 C -0.109 4.109 25 H 0.157 0.843 26 C -0.136 4.136 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.291 0.709 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.112 0.888 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 5.700 8.436 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.134 4.134 3 H 0.157 0.843 4 C 0.312 3.688 5 O -0.389 6.389 6 N -0.311 5.311 7 C 0.044 3.956 8 C -0.241 4.241 9 C -0.085 4.085 10 C -0.266 4.266 11 C 0.087 3.913 12 C -0.525 4.525 13 H 0.097 0.903 14 C -0.180 4.180 15 N -0.445 5.445 16 Si 0.806 3.194 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.181 1.181 20 C -0.212 4.212 21 C -0.098 4.098 22 C 0.310 3.690 23 O -0.391 6.391 24 C -0.130 4.130 25 H 0.174 0.826 26 C -0.194 4.194 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.588 5.127 8.181 17.493 hybrid contribution 1.311 -0.299 -0.501 1.435 sum -13.277 4.828 7.680 16.080 Atomic orbital electron populations 1.21716 0.88531 1.03579 1.04889 1.22324 1.00726 1.01231 0.89160 0.84305 1.21626 0.75991 0.79921 0.91287 1.90703 1.58251 1.68929 1.21034 1.47225 1.46280 1.27955 1.09667 1.20278 0.90310 0.91425 0.93635 1.19392 0.94179 1.09098 1.01479 1.20639 0.95719 0.96011 0.96098 1.21144 0.93699 1.09373 1.02397 1.17985 0.93478 0.90037 0.89836 1.19887 0.91130 1.08651 1.32876 0.90303 1.26844 1.05475 0.94296 0.91421 1.69871 1.34820 1.08433 1.31366 0.85202 0.75167 0.78986 0.80084 1.18369 1.18972 1.18112 1.21246 0.95589 1.04828 0.99556 1.20706 0.92899 0.98476 0.97742 1.21679 0.79268 0.86461 0.81632 1.90713 1.42708 1.38617 1.67083 1.22315 1.00129 0.93065 0.97510 0.82550 1.21738 0.98744 0.99863 0.99022 0.91926 0.87346 0.91538 0.89408 0.88914 0.87514 0.88387 0.89863 0.88105 0.88631 0.93832 0.86924 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.10 71.98 0.65 -0.80 16 2 C -0.11 -1.98 3.34 -10.93 -0.04 -2.02 16 3 H 0.14 2.05 7.74 -2.39 -0.02 2.04 16 4 C 0.52 15.15 7.41 87.99 0.65 15.80 16 5 O -0.52 -18.23 17.48 -2.86 -0.05 -18.28 16 6 N -0.57 -18.33 2.54 -760.73 -1.93 -20.26 16 7 C 0.16 6.03 5.67 85.64 0.49 6.51 16 8 C -0.24 -10.88 5.49 -19.67 -0.11 -10.99 16 9 C -0.07 -3.12 9.67 22.22 0.21 -2.91 16 10 C -0.25 -12.83 9.80 22.73 0.22 -12.61 16 11 C 0.09 5.03 5.58 -21.29 -0.12 4.91 16 12 C -0.50 -27.48 9.05 23.46 0.21 -27.27 16 13 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 14 C 0.04 1.82 5.14 85.26 0.44 2.26 16 15 N -0.82 -43.82 10.95 21.83 0.24 -43.58 16 16 Si 0.99 38.50 29.60 68.60 2.03 40.53 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 18 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 C -0.19 -10.70 8.70 22.73 0.20 -10.50 16 21 C -0.08 -3.97 9.67 22.22 0.21 -3.75 16 22 C 0.52 15.45 7.41 87.99 0.65 16.11 16 23 O -0.52 -19.08 17.48 -2.85 -0.05 -19.13 16 24 C -0.11 -1.94 3.33 -10.93 -0.04 -1.98 16 25 H 0.16 1.71 7.75 -2.39 -0.02 1.69 16 26 C -0.14 -2.23 9.10 71.98 0.65 -1.58 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 3.14 7.77 -2.39 -0.02 3.12 16 31 H 0.09 3.21 7.77 -2.39 -0.02 3.20 16 32 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.29 14.00 8.30 -92.71 -0.77 13.24 16 35 H 0.10 5.84 6.16 -2.91 -0.02 5.83 16 36 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -69.94 334.19 5.59 -64.35 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 1.05 Total: 25.18 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.30 Total: -28.81 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -1.69 Total: -63.84 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.10 Total: -37.41 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -69.94 5.59 -64.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336372097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.489 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds