Wall clock time and date at job start Tue Mar 31 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46886 * 2 1 4 4 C 1.50700 * 109.47230 * 119.99999 * 2 1 3 5 5 H 1.07995 * 120.00246 * 120.00155 * 4 2 1 6 6 C 1.37875 * 120.00176 * 299.99822 * 4 2 1 7 7 N 1.31526 * 119.99692 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00606 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46850 * 59.99758 * 8 6 4 10 10 H 1.48497 * 109.47393 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46862 * 300.00525 * 8 6 4 12 12 N 1.46503 * 109.46934 * 240.00009 * 2 1 3 13 13 C 1.34769 * 120.00227 * 85.00199 * 12 2 1 14 14 O 1.21290 * 119.99818 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00282 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47244 * 179.97438 * 15 13 12 17 17 C 1.50707 * 109.47242 * 179.97438 * 16 15 13 18 18 C 1.33998 * 124.91908 * 89.99849 * 17 16 15 19 19 C 1.46785 * 106.18190 * 180.02562 * 18 17 16 20 20 C 1.39405 * 134.36624 * 179.97438 * 19 18 17 21 21 C 1.36748 * 119.71388 * 179.97438 * 20 19 18 22 22 C 1.38738 * 120.41266 * 0.04525 * 21 20 19 23 23 C 1.37848 * 120.69043 * 359.97438 * 22 21 20 24 24 C 1.38937 * 119.81556 * 0.02562 * 23 22 21 25 25 O 1.34443 * 124.92313 * 270.02750 * 17 16 15 26 26 H 1.08996 * 109.47520 * 60.00274 * 1 2 3 27 27 H 1.08997 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46787 * 299.99577 * 1 2 3 29 29 H 0.96996 * 119.99476 * 179.97438 * 7 6 4 30 30 H 0.97004 * 119.99421 * 264.99482 * 12 2 1 31 31 H 1.09000 * 109.47550 * 59.99238 * 15 13 12 32 32 H 1.09000 * 109.47055 * 299.99470 * 15 13 12 33 33 H 1.09002 * 109.47532 * 60.00018 * 16 15 13 34 34 H 1.08998 * 109.46991 * 299.99278 * 16 15 13 35 35 H 1.08001 * 126.91274 * 0.02562 * 18 17 16 36 36 H 1.07996 * 120.14611 * 359.97438 * 20 19 18 37 37 H 1.07993 * 119.79240 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.65346 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.09001 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8076 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2205 11 1 1.8281 -2.5197 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6487 -0.7289 -3.5877 16 6 2.6998 0.2541 -4.7590 17 6 3.2021 -0.4563 -5.9896 18 6 2.4259 -1.0836 -6.8837 19 6 3.3321 -1.6253 -7.9034 20 6 3.1543 -2.3645 -9.0719 21 6 4.2417 -2.7207 -9.8207 22 6 5.5189 -2.3518 -9.4240 23 6 5.7142 -1.6213 -8.2715 24 6 4.6229 -1.2492 -7.4962 25 8 4.4940 -0.5530 -6.3489 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7082 1.1609 3.4844 30 1 2.2490 -1.6318 -1.1525 31 1 1.9759 -1.5507 -3.8325 32 1 3.6479 -1.1214 -3.3986 33 1 3.3725 1.0762 -4.5145 34 1 1.7005 0.6462 -4.9481 35 1 1.3498 -1.1726 -6.8592 36 1 2.1621 -2.6547 -9.3844 37 1 4.1054 -3.2930 -10.7264 38 1 6.3690 -2.6393 -10.0250 39 1 6.7128 -1.3397 -7.9716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338069094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:47 Heat of formation + Delta-G solvation = -24.307324 kcal Electronic energy + Delta-G solvation = -21152.708656 eV Core-core repulsion = 17833.121608 eV Total energy + Delta-G solvation = -3319.587048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.60012 -38.99268 -38.08861 -35.00590 -34.03291 -32.46637 -32.24276 -30.61443 -29.50940 -28.31230 -25.30207 -24.89467 -23.02955 -21.94181 -21.27412 -20.63107 -19.39869 -17.53083 -17.36688 -16.83575 -16.22121 -15.93546 -15.29175 -15.20096 -15.08828 -14.33291 -14.21896 -13.86852 -13.29070 -13.19753 -13.04555 -12.61748 -12.42287 -12.37356 -12.10896 -11.91603 -11.68502 -11.24433 -11.09074 -11.00595 -10.93136 -10.72447 -10.34002 -10.26544 -10.24209 -9.10534 -9.06062 -8.82069 -8.56065 -8.28380 -7.93232 -6.13204 -4.22705 0.70814 1.15046 2.19470 2.54689 3.24929 3.30236 3.31221 3.36322 3.50572 3.99600 4.27723 4.40470 4.50156 4.70043 4.90169 4.99711 5.01927 5.04936 5.13172 5.19059 5.24179 5.46942 5.52282 5.64719 5.75205 5.87710 5.97499 6.03464 6.09755 6.20372 6.29282 6.48772 6.81234 6.94990 7.05720 7.13786 7.44277 7.54177 7.68167 7.90139 8.14060 8.64488 8.76265 9.09985 9.44857 10.92703 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.035813 B = 0.002571 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.655641 B =10888.078871 C =11207.728056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.709 5.709 13 C 0.502 3.498 14 O -0.557 6.557 15 C -0.140 4.140 16 C -0.031 4.031 17 C 0.051 3.949 18 C -0.214 4.214 19 C -0.126 4.126 20 C -0.074 4.074 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.106 4.106 24 C 0.048 3.952 25 O -0.191 6.191 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.090 0.910 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 -7.448 -22.016 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.356 5.356 13 C 0.286 3.714 14 O -0.437 6.437 15 C -0.180 4.180 16 C -0.069 4.069 17 C 0.004 3.996 18 C -0.233 4.233 19 C -0.127 4.127 20 C -0.092 4.092 21 C -0.156 4.156 22 C -0.118 4.118 23 C -0.124 4.124 24 C 0.001 3.999 25 O -0.092 6.092 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.177 0.823 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.533 -6.360 -21.712 23.291 hybrid contribution 0.298 -1.060 0.822 1.374 sum 5.831 -7.420 -20.890 22.922 Atomic orbital electron populations 1.22076 0.98455 0.99104 1.00923 1.18747 0.91042 0.93999 0.80031 0.93356 1.21186 1.32529 1.13249 0.90370 0.92135 1.24897 0.94810 0.94962 0.99074 1.69897 1.35772 1.22428 1.24001 0.86499 0.79174 0.79575 0.81787 1.20171 1.21114 1.20163 1.46538 1.64864 1.13608 1.10582 1.20296 0.78774 0.87513 0.84776 1.90667 1.51621 1.16097 1.85272 1.21686 1.03645 0.99274 0.93385 1.20047 1.02978 0.96986 0.86840 1.22565 0.80199 0.99200 0.97658 1.22265 1.00152 1.05272 0.95597 1.19996 0.92928 1.02309 0.97506 1.20296 0.99443 0.96690 0.92763 1.20764 0.92355 1.01934 1.00575 1.20900 0.97641 0.97742 0.95523 1.19963 0.96451 1.01336 0.94657 1.19663 0.95789 0.97048 0.87397 1.83994 1.28111 1.61581 1.35560 0.96629 0.95486 0.89145 0.92506 0.77842 0.88915 0.88965 0.88762 0.87488 0.82348 0.85597 0.85492 0.84926 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.44 5.07 -54.93 -0.28 -14.72 16 13 C 0.50 9.54 7.79 -10.99 -0.09 9.45 16 14 O -0.56 -12.75 15.65 5.55 0.09 -12.66 16 15 C -0.14 -1.88 5.68 -27.89 -0.16 -2.04 16 16 C -0.03 -0.40 5.01 -27.88 -0.14 -0.54 16 17 C 0.05 0.65 6.49 -35.80 -0.23 0.42 16 18 C -0.21 -2.50 11.01 -37.62 -0.41 -2.92 16 19 C -0.13 -1.51 6.40 -105.16 -0.67 -2.18 16 20 C -0.07 -0.71 10.05 -39.69 -0.40 -1.11 16 21 C -0.14 -1.12 9.98 -39.94 -0.40 -1.52 16 22 C -0.10 -0.81 10.01 -39.54 -0.40 -1.20 16 23 C -0.11 -1.05 10.07 -39.47 -0.40 -1.45 16 24 C 0.05 0.61 7.42 -38.48 -0.29 0.32 16 25 O -0.19 -2.63 10.58 3.91 0.04 -2.59 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.11 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -31.57 336.51 -8.52 -40.09 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.24 Total: 5.80 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.81 Total: -12.33 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.35 Total: -38.96 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.13 Total: -15.25 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.57 -8.52 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338069094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.782 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds