Wall clock time and date at job start Tue Mar 31 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46886 * 2 1 4 4 C 1.50700 * 109.47230 * 119.99999 * 2 1 3 5 5 H 1.07995 * 120.00246 * 120.00155 * 4 2 1 6 6 C 1.37875 * 120.00176 * 299.99822 * 4 2 1 7 7 N 1.31526 * 119.99692 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00606 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46850 * 59.99758 * 8 6 4 10 10 H 1.48497 * 109.47393 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46862 * 300.00525 * 8 6 4 12 12 N 1.46503 * 109.46934 * 240.00009 * 2 1 3 13 13 C 1.34769 * 120.00227 * 85.00199 * 12 2 1 14 14 O 1.21290 * 119.99818 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00282 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47244 * 179.97438 * 15 13 12 17 17 C 1.50707 * 109.47242 * 179.97438 * 16 15 13 18 18 C 1.33998 * 124.91908 * 89.99849 * 17 16 15 19 19 C 1.46785 * 106.18190 * 180.02562 * 18 17 16 20 20 C 1.39405 * 134.36624 * 179.97438 * 19 18 17 21 21 C 1.36748 * 119.71388 * 179.97438 * 20 19 18 22 22 C 1.38738 * 120.41266 * 0.04525 * 21 20 19 23 23 C 1.37848 * 120.69043 * 359.97438 * 22 21 20 24 24 C 1.38937 * 119.81556 * 0.02562 * 23 22 21 25 25 O 1.34443 * 124.92313 * 270.02750 * 17 16 15 26 26 H 1.08996 * 109.47520 * 60.00274 * 1 2 3 27 27 H 1.08997 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46787 * 299.99577 * 1 2 3 29 29 H 0.96996 * 119.99476 * 179.97438 * 7 6 4 30 30 H 0.97004 * 119.99421 * 264.99482 * 12 2 1 31 31 H 1.09000 * 109.47550 * 59.99238 * 15 13 12 32 32 H 1.09000 * 109.47055 * 299.99470 * 15 13 12 33 33 H 1.09002 * 109.47532 * 60.00018 * 16 15 13 34 34 H 1.08998 * 109.46991 * 299.99278 * 16 15 13 35 35 H 1.08001 * 126.91274 * 0.02562 * 18 17 16 36 36 H 1.07996 * 120.14611 * 359.97438 * 20 19 18 37 37 H 1.07993 * 119.79240 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.65346 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.09001 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8076 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2205 11 1 1.8281 -2.5197 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6487 -0.7289 -3.5877 16 6 2.6998 0.2541 -4.7590 17 6 3.2021 -0.4563 -5.9896 18 6 2.4259 -1.0836 -6.8837 19 6 3.3321 -1.6253 -7.9034 20 6 3.1543 -2.3645 -9.0719 21 6 4.2417 -2.7207 -9.8207 22 6 5.5189 -2.3518 -9.4240 23 6 5.7142 -1.6213 -8.2715 24 6 4.6229 -1.2492 -7.4962 25 8 4.4940 -0.5530 -6.3489 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7082 1.1609 3.4844 30 1 2.2490 -1.6318 -1.1525 31 1 1.9759 -1.5507 -3.8325 32 1 3.6479 -1.1214 -3.3986 33 1 3.3725 1.0762 -4.5145 34 1 1.7005 0.6462 -4.9481 35 1 1.3498 -1.1726 -6.8592 36 1 2.1621 -2.6547 -9.3844 37 1 4.1054 -3.2930 -10.7264 38 1 6.3690 -2.6393 -10.0250 39 1 6.7128 -1.3397 -7.9716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338069094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:47 Heat of formation + Delta-G solvation = -42.974776 kcal Electronic energy + Delta-G solvation = -21153.518138 eV Core-core repulsion = 17833.121608 eV Total energy + Delta-G solvation = -3320.396530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.45027 -40.59812 -38.82149 -36.81689 -35.17314 -34.30935 -33.21743 -31.33685 -31.11216 -29.50392 -27.34388 -26.04027 -23.85508 -22.99631 -22.54003 -21.76684 -21.07896 -18.95843 -18.31315 -17.91236 -17.36752 -17.25110 -17.00576 -16.43220 -16.18155 -15.92658 -15.11815 -14.83543 -14.62663 -14.49086 -14.33122 -14.00885 -13.61579 -13.53658 -13.26635 -13.04403 -12.94721 -12.85886 -12.75620 -12.70403 -12.26546 -12.15999 -12.12846 -11.80646 -11.11590 -11.09147 -10.74066 -10.56733 -9.74091 -9.58058 -9.09982 -8.17652 -6.35286 -0.04744 0.41057 1.33665 1.44769 1.46708 1.54573 1.69732 1.82412 2.36228 2.65923 2.79154 3.12474 3.40021 3.73418 3.84524 4.00610 4.08150 4.12918 4.21233 4.35870 4.44261 4.54151 4.58975 4.67578 4.77469 4.89311 4.93248 4.94651 5.02413 5.10567 5.27329 5.36898 5.44328 5.50066 5.53144 5.61563 5.70155 5.79505 5.91052 6.10794 6.22499 6.72746 6.96784 7.32403 7.56463 8.88327 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.035813 B = 0.002571 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.655641 B =10888.078871 C =11207.728056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.707 5.707 13 C 0.499 3.501 14 O -0.600 6.600 15 C -0.122 4.122 16 C -0.023 4.023 17 C 0.032 3.968 18 C -0.206 4.206 19 C -0.152 4.152 20 C -0.082 4.082 21 C -0.135 4.135 22 C -0.091 4.091 23 C -0.123 4.123 24 C 0.019 3.981 25 O -0.212 6.212 26 H 0.014 0.986 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.265 0.735 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.178 0.822 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 -10.173 -23.798 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.355 5.355 13 C 0.287 3.713 14 O -0.482 6.482 15 C -0.161 4.161 16 C -0.061 4.061 17 C -0.015 4.015 18 C -0.225 4.225 19 C -0.153 4.153 20 C -0.100 4.100 21 C -0.153 4.153 22 C -0.108 4.108 23 C -0.141 4.141 24 C -0.028 4.028 25 O -0.115 6.115 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.195 0.805 36 H 0.163 0.837 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.309 -9.123 -23.525 26.009 hybrid contribution 0.103 -0.217 1.216 1.240 sum 6.412 -9.340 -22.308 25.020 Atomic orbital electron populations 1.21893 0.98204 0.99504 0.99651 1.18341 0.91219 0.91896 0.82035 0.98436 1.21535 1.32636 1.13599 0.90894 0.90895 1.25816 0.94898 0.95607 1.02366 1.70052 1.36931 1.23921 1.24663 0.85394 0.78604 0.78729 0.77582 1.19653 1.21180 1.18824 1.46304 1.65101 1.14337 1.09792 1.21208 0.77410 0.87070 0.85654 1.90648 1.53247 1.18301 1.86015 1.21605 1.04750 0.99383 0.90401 1.19886 1.02744 0.96410 0.87036 1.22399 0.80326 1.00670 0.98132 1.22565 1.00989 1.03986 0.94974 1.20296 0.92701 1.03593 0.98696 1.20655 1.01112 0.96156 0.92068 1.21223 0.91829 1.01096 1.01153 1.21379 0.98988 0.95860 0.94615 1.20342 0.96544 1.01976 0.95254 1.20177 0.97163 0.97895 0.87574 1.83934 1.28634 1.62421 1.36524 0.96662 0.94037 0.91604 0.92547 0.75893 0.85944 0.87409 0.90404 0.87347 0.80502 0.83652 0.82268 0.81617 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.09 16 2 C 0.27 13.93 2.56 44.24 0.11 14.04 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 4 C -0.55 -29.05 8.73 25.60 0.22 -28.83 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.71 -28.76 5.07 -446.10 -2.26 -31.02 16 13 C 0.50 19.08 7.79 87.66 0.68 19.76 16 14 O -0.60 -28.42 15.65 -3.06 -0.05 -28.47 16 15 C -0.12 -3.16 5.68 29.85 0.17 -2.99 16 16 C -0.02 -0.60 5.01 29.85 0.15 -0.45 16 17 C 0.03 0.80 6.49 24.72 0.16 0.96 16 18 C -0.21 -4.63 11.01 23.54 0.26 -4.37 16 19 C -0.15 -3.45 6.40 -20.21 -0.13 -3.58 16 20 C -0.08 -1.37 10.05 22.20 0.22 -1.15 16 21 C -0.14 -1.73 9.98 22.04 0.22 -1.51 16 22 C -0.09 -1.19 10.01 22.30 0.22 -0.97 16 23 C -0.12 -2.28 10.07 22.34 0.23 -2.06 16 24 C 0.02 0.46 7.42 22.99 0.17 0.63 16 25 O -0.21 -5.93 10.58 -8.93 -0.09 -6.03 16 26 H 0.01 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.41 13.73 8.54 -92.71 -0.79 12.93 16 31 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 34 H 0.11 2.73 8.10 -2.39 -0.02 2.71 16 35 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -70.76 336.51 3.94 -66.82 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.27 Total: 22.64 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 3.81 Total: -15.42 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.02 Total: -83.58 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.14 Total: -34.50 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.76 3.94 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338069094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.841 kcal (2) G-P(sol) polarization free energy of solvation -70.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds