Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00062 * 2 1 4 4 C 1.52994 * 109.47509 * 293.96118 * 3 2 1 5 5 C 1.52998 * 109.47571 * 180.02562 * 4 3 2 6 6 F 1.39907 * 109.46985 * 59.99328 * 5 4 3 7 7 F 1.39899 * 109.47472 * 179.97438 * 5 4 3 8 8 F 1.39899 * 109.46869 * 299.99675 * 5 4 3 9 9 C 1.46899 * 110.99975 * 123.95868 * 2 1 3 10 10 C 1.50701 * 109.47364 * 66.04655 * 9 2 1 11 11 C 1.38631 * 119.74492 * 269.72830 * 10 9 2 12 12 C 1.37628 * 120.24658 * 179.72171 * 11 10 9 13 13 C 1.40713 * 119.74102 * 0.56771 * 12 11 10 14 14 C 1.41396 * 120.24486 * 179.68050 * 13 12 11 15 15 H 1.08000 * 120.00273 * 204.40023 * 14 13 12 16 16 C 1.39952 * 119.99567 * 24.40418 * 14 13 12 17 17 N 1.30819 * 120.00273 * 17.85554 * 16 14 13 18 18 Si 1.86792 * 119.99748 * 197.85465 * 16 14 13 19 19 H 1.48502 * 109.47619 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47123 * 120.00040 * 18 16 14 21 21 H 1.48498 * 109.47671 * 240.00088 * 18 16 14 22 22 C 1.40724 * 119.51507 * 359.70437 * 13 12 11 23 23 C 1.37619 * 119.73858 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47571 * 59.99301 * 1 2 3 25 25 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47058 * 299.99537 * 1 2 3 27 27 H 1.09009 * 109.47165 * 53.95776 * 3 2 1 28 28 H 1.08998 * 109.47464 * 173.95429 * 3 2 1 29 29 H 1.09001 * 109.46855 * 299.99697 * 4 3 2 30 30 H 1.08998 * 109.47320 * 59.99223 * 4 3 2 31 31 H 1.09008 * 109.47194 * 186.04300 * 9 2 1 32 32 H 1.08999 * 109.47247 * 306.04439 * 9 2 1 33 33 H 1.08007 * 119.88160 * 359.97289 * 11 10 9 34 34 H 1.07992 * 120.12819 * 180.27620 * 12 11 10 35 35 H 0.96991 * 120.00408 * 180.02562 * 17 16 14 36 36 H 1.07988 * 120.12642 * 179.97438 * 22 13 12 37 37 H 1.08005 * 119.86819 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3181 5 6 2.1802 3.4856 -1.3184 6 9 3.5720 3.4504 -1.1797 7 9 1.8478 4.1128 -2.5239 8 9 1.6233 4.1994 -0.2518 9 6 1.9955 -0.7661 1.1375 10 6 1.6370 -2.2205 0.9727 11 6 0.4491 -2.7004 1.5023 12 6 0.1088 -4.0255 1.3529 13 6 0.9775 -4.8966 0.6699 14 6 0.6416 -6.2615 0.5161 15 1 1.4194 -6.9954 0.3651 16 6 -0.6989 -6.6613 0.5595 17 7 -1.6504 -5.7795 0.3909 18 14 -1.1295 -8.4542 0.8581 19 1 0.1185 -9.2433 1.0170 20 1 -1.9469 -8.5680 2.0927 21 1 -1.9023 -8.9769 -0.2972 22 6 2.1833 -4.3996 0.1414 23 6 2.5004 -3.0696 0.2980 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5612 1.9273 0.8310 28 1 3.0797 1.3444 0.1082 29 1 2.0657 1.5017 -2.1491 30 1 0.5471 2.0845 -1.4263 31 1 3.0798 -0.6612 1.1755 32 1 1.5612 -0.3874 2.0628 33 1 -0.2137 -2.0310 2.0307 34 1 -0.8192 -4.3964 1.7624 35 1 -2.5794 -6.0565 0.4213 36 1 2.8575 -5.0595 -0.3842 37 1 3.4255 -2.6860 -0.1064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342725101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -143.791500 kcal Electronic energy + Delta-G solvation = -22148.321232 eV Core-core repulsion = 18281.696221 eV Total energy + Delta-G solvation = -3866.625011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.23559 -47.74070 -47.70728 -38.35490 -36.83992 -33.88598 -32.38556 -30.04738 -29.34064 -27.27126 -26.49123 -24.47398 -22.68215 -21.22225 -20.82915 -19.77250 -18.68836 -18.48852 -17.49066 -17.31200 -15.58085 -15.41125 -15.02112 -14.72275 -14.56363 -14.54340 -14.15364 -13.95430 -13.89982 -13.86328 -13.72126 -13.26489 -13.07676 -12.48174 -12.21839 -12.01519 -11.92126 -11.57634 -11.37331 -11.35369 -11.12392 -11.04728 -10.93310 -10.53109 -10.33420 -9.59369 -9.40443 -9.15269 -8.11060 -7.45096 -7.31284 -6.78506 -4.36677 2.58926 2.73076 3.05141 3.07277 3.10776 3.14600 3.62715 3.87892 3.91421 3.93431 4.37281 4.68701 4.79523 4.88937 5.26771 5.44882 5.58807 5.66469 5.68886 5.73531 5.87612 5.99940 6.21112 6.34162 6.37964 6.41657 6.92899 7.05676 7.19478 7.30591 7.33330 7.37201 7.60352 7.86546 8.04168 8.11919 8.28936 8.62547 8.88177 8.96211 10.15779 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.039597 B = 0.002906 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.948231 B = 9634.122540 C = 9825.309702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.051 3.949 4 C -0.164 4.164 5 C 0.453 3.547 6 F -0.184 7.184 7 F -0.187 7.187 8 F -0.186 7.186 9 C 0.121 3.879 10 C -0.211 4.211 11 C -0.093 4.093 12 C -0.167 4.167 13 C 0.113 3.887 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.228 4.228 23 C -0.068 4.068 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.280 0.720 36 H 0.091 0.909 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 13.480 -1.321 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.078 4.078 4 C -0.203 4.203 5 C 0.399 3.601 6 F -0.166 7.166 7 F -0.168 7.168 8 F -0.168 7.168 9 C -0.005 4.005 10 C -0.213 4.213 11 C -0.112 4.112 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.248 4.248 23 C -0.087 4.087 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.015 13.303 -1.765 13.754 hybrid contribution -0.583 -0.098 0.707 0.922 sum 2.432 13.205 -1.058 13.469 Atomic orbital electron populations 1.22512 0.87330 1.03886 0.99202 1.62102 1.08256 1.10059 1.45137 1.22025 1.01310 0.90623 0.93847 1.22917 1.04705 0.88990 1.03658 1.20666 0.75941 0.90347 0.73183 1.93184 1.30943 1.96932 1.95514 1.93182 1.92287 1.84979 1.46357 1.93176 1.85200 1.81241 1.57178 1.20761 0.98406 0.91984 0.89334 1.18796 0.98551 0.92650 1.11262 1.20517 0.95177 0.95642 0.99907 1.21276 1.01587 0.92673 1.03058 1.17629 0.90494 0.93127 0.87738 1.19644 0.92344 0.93470 1.43702 0.90440 1.25908 0.96307 0.99776 0.92175 1.69829 1.01269 1.36072 1.34566 0.86294 0.79390 0.82508 0.78733 1.18397 1.19732 1.20004 1.20972 1.00805 0.94669 1.08369 1.20323 0.97232 0.93558 0.97584 0.92279 0.89314 0.96177 0.94066 0.89836 0.86338 0.87295 0.91579 0.95573 0.89911 0.86565 0.90961 0.89114 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.98 60.07 0.54 0.82 16 2 N -0.53 -8.05 4.75 -244.37 -1.16 -9.21 16 3 C 0.05 0.60 4.71 -3.83 -0.02 0.59 16 4 C -0.16 -1.66 5.18 -26.74 -0.14 -1.80 16 5 C 0.45 4.72 3.16 37.16 0.12 4.84 16 6 F -0.18 -2.06 16.80 2.25 0.04 -2.03 16 7 F -0.19 -2.03 17.32 2.25 0.04 -1.99 16 8 F -0.19 -2.08 16.80 2.25 0.04 -2.04 16 9 C 0.12 2.03 5.11 -4.98 -0.03 2.00 16 10 C -0.21 -4.37 4.91 -104.33 -0.51 -4.88 16 11 C -0.09 -2.08 7.87 -39.66 -0.31 -2.39 16 12 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 13 C 0.11 2.95 5.58 -106.82 -0.60 2.35 16 14 C -0.46 -12.11 9.05 -37.74 -0.34 -12.45 16 15 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 16 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.79 -20.11 10.95 55.55 0.61 -19.50 16 18 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 C -0.23 -5.52 9.80 -38.87 -0.38 -5.91 16 23 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 24 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 25 H 0.09 1.59 5.90 -51.93 -0.31 1.28 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.48 7.78 -51.92 -0.40 0.08 16 28 H 0.08 0.96 7.59 -51.93 -0.39 0.57 16 29 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.01 6.55 -51.93 -0.34 0.67 16 31 H 0.07 1.03 7.87 -51.92 -0.41 0.62 16 32 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.08 1.67 8.00 -52.48 -0.42 1.25 16 34 H 0.12 3.05 6.15 -52.49 -0.32 2.72 16 35 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 36 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -26.48 318.36 -7.74 -34.22 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.59 Total: 3.84 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.48 Total: -21.45 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: -0.55 Total: -28.71 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.11 Total: -6.05 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.48 -7.74 -34.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342725101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.572 kcal (2) G-P(sol) polarization free energy of solvation -26.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds