Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00062 * 2 1 4 4 C 1.52994 * 109.47509 * 293.96118 * 3 2 1 5 5 C 1.52998 * 109.47571 * 180.02562 * 4 3 2 6 6 F 1.39907 * 109.46985 * 59.99328 * 5 4 3 7 7 F 1.39899 * 109.47472 * 179.97438 * 5 4 3 8 8 F 1.39899 * 109.46869 * 299.99675 * 5 4 3 9 9 C 1.46899 * 110.99975 * 123.95868 * 2 1 3 10 10 C 1.50701 * 109.47364 * 66.04655 * 9 2 1 11 11 C 1.38631 * 119.74492 * 269.72830 * 10 9 2 12 12 C 1.37628 * 120.24658 * 179.72171 * 11 10 9 13 13 C 1.40713 * 119.74102 * 0.56771 * 12 11 10 14 14 C 1.41396 * 120.24486 * 179.68050 * 13 12 11 15 15 H 1.08000 * 120.00273 * 204.40023 * 14 13 12 16 16 C 1.39952 * 119.99567 * 24.40418 * 14 13 12 17 17 N 1.30819 * 120.00273 * 17.85554 * 16 14 13 18 18 Si 1.86792 * 119.99748 * 197.85465 * 16 14 13 19 19 H 1.48502 * 109.47619 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47123 * 120.00040 * 18 16 14 21 21 H 1.48498 * 109.47671 * 240.00088 * 18 16 14 22 22 C 1.40724 * 119.51507 * 359.70437 * 13 12 11 23 23 C 1.37619 * 119.73858 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47571 * 59.99301 * 1 2 3 25 25 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47058 * 299.99537 * 1 2 3 27 27 H 1.09009 * 109.47165 * 53.95776 * 3 2 1 28 28 H 1.08998 * 109.47464 * 173.95429 * 3 2 1 29 29 H 1.09001 * 109.46855 * 299.99697 * 4 3 2 30 30 H 1.08998 * 109.47320 * 59.99223 * 4 3 2 31 31 H 1.09008 * 109.47194 * 186.04300 * 9 2 1 32 32 H 1.08999 * 109.47247 * 306.04439 * 9 2 1 33 33 H 1.08007 * 119.88160 * 359.97289 * 11 10 9 34 34 H 1.07992 * 120.12819 * 180.27620 * 12 11 10 35 35 H 0.96991 * 120.00408 * 180.02562 * 17 16 14 36 36 H 1.07988 * 120.12642 * 179.97438 * 22 13 12 37 37 H 1.08005 * 119.86819 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3181 5 6 2.1802 3.4856 -1.3184 6 9 3.5720 3.4504 -1.1797 7 9 1.8478 4.1128 -2.5239 8 9 1.6233 4.1994 -0.2518 9 6 1.9955 -0.7661 1.1375 10 6 1.6370 -2.2205 0.9727 11 6 0.4491 -2.7004 1.5023 12 6 0.1088 -4.0255 1.3529 13 6 0.9775 -4.8966 0.6699 14 6 0.6416 -6.2615 0.5161 15 1 1.4194 -6.9954 0.3651 16 6 -0.6989 -6.6613 0.5595 17 7 -1.6504 -5.7795 0.3909 18 14 -1.1295 -8.4542 0.8581 19 1 0.1185 -9.2433 1.0170 20 1 -1.9469 -8.5680 2.0927 21 1 -1.9023 -8.9769 -0.2972 22 6 2.1833 -4.3996 0.1414 23 6 2.5004 -3.0696 0.2980 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5612 1.9273 0.8310 28 1 3.0797 1.3444 0.1082 29 1 2.0657 1.5017 -2.1491 30 1 0.5471 2.0845 -1.4263 31 1 3.0798 -0.6612 1.1755 32 1 1.5612 -0.3874 2.0628 33 1 -0.2137 -2.0310 2.0307 34 1 -0.8192 -4.3964 1.7624 35 1 -2.5794 -6.0565 0.4213 36 1 2.8575 -5.0595 -0.3842 37 1 3.4255 -2.6860 -0.1064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342725101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -157.080641 kcal Electronic energy + Delta-G solvation = -22148.897492 eV Core-core repulsion = 18281.696221 eV Total energy + Delta-G solvation = -3867.201272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.07226 -48.57873 -48.55103 -39.87534 -38.27845 -35.61805 -33.57894 -31.63409 -31.15521 -28.75267 -27.68902 -25.88027 -23.91301 -22.81327 -22.15854 -21.41012 -19.52036 -19.34261 -19.18804 -18.36273 -17.17644 -16.61405 -16.33068 -16.06581 -15.65835 -15.58399 -15.45246 -15.12761 -14.98363 -14.75713 -14.71511 -14.69148 -14.29312 -14.12471 -13.78091 -13.40097 -13.11095 -12.98340 -12.83721 -12.72040 -12.54784 -12.49460 -12.24526 -12.01334 -11.94307 -11.34475 -11.21468 -10.98376 -9.38456 -9.23842 -9.10414 -8.61486 -6.30364 0.96064 1.20234 1.38719 1.49523 1.53641 1.80380 2.21896 2.61993 2.83317 3.04646 3.12513 3.39214 3.81898 3.93017 4.03334 4.21317 4.33190 4.44246 4.54990 4.57372 4.65410 4.70835 4.79733 4.85760 4.90047 5.08655 5.18137 5.19462 5.41471 5.51662 5.74766 5.98314 6.05396 6.13609 6.20266 6.33296 6.43995 6.74550 6.97963 7.08161 8.35104 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.039597 B = 0.002906 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.948231 B = 9634.122540 C = 9825.309702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.053 3.947 4 C -0.157 4.157 5 C 0.459 3.541 6 F -0.188 7.188 7 F -0.189 7.189 8 F -0.190 7.190 9 C 0.124 3.876 10 C -0.195 4.195 11 C -0.092 4.092 12 C -0.191 4.191 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.825 5.825 18 Si 0.980 3.020 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.266 1.266 22 C -0.246 4.246 23 C -0.072 4.072 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 14.913 -1.362 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.075 4.075 4 C -0.196 4.196 5 C 0.404 3.596 6 F -0.170 7.170 7 F -0.170 7.170 8 F -0.172 7.172 9 C -0.002 4.002 10 C -0.196 4.196 11 C -0.111 4.111 12 C -0.210 4.210 13 C 0.077 3.923 14 C -0.533 4.533 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.451 5.451 18 Si 0.801 3.199 19 H -0.183 1.183 20 H -0.189 1.189 21 H -0.191 1.191 22 C -0.265 4.265 23 C -0.090 4.090 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.430 14.759 -1.810 15.260 hybrid contribution -0.639 -0.338 0.704 1.009 sum 2.791 14.421 -1.106 14.730 Atomic orbital electron populations 1.22468 0.87311 1.02085 1.00912 1.61957 1.08376 1.12049 1.44249 1.22044 1.01643 0.88778 0.95054 1.22854 1.05397 0.88482 1.02850 1.20638 0.75652 0.90346 0.72934 1.93180 1.31362 1.96945 1.95521 1.93181 1.92286 1.85040 1.46509 1.93173 1.85229 1.81395 1.57363 1.20701 0.99677 0.89366 0.90457 1.19247 0.96996 0.95021 1.08370 1.20732 0.96057 0.94693 0.99620 1.21235 1.01305 0.94120 1.04373 1.17955 0.91716 0.93748 0.88851 1.19856 0.93297 0.93828 1.46309 0.91018 1.26710 0.95640 1.04228 0.91294 1.69877 1.01802 1.38134 1.35277 0.85200 0.79017 0.76815 0.78917 1.18337 1.18898 1.19077 1.21169 1.00505 0.96064 1.08796 1.20646 0.98418 0.92696 0.97271 0.90085 0.92784 0.95058 0.93323 0.89147 0.85825 0.86263 0.89803 0.94613 0.88089 0.88471 0.90261 0.88943 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 8.98 127.69 1.15 1.70 16 2 N -0.54 -14.77 4.75 -927.05 -4.41 -19.18 16 3 C 0.05 1.08 4.71 86.30 0.41 1.48 16 4 C -0.16 -2.67 5.18 30.59 0.16 -2.52 16 5 C 0.46 8.33 3.16 71.98 0.23 8.55 16 6 F -0.19 -3.75 16.80 44.97 0.76 -2.99 16 7 F -0.19 -3.66 17.32 44.97 0.78 -2.88 16 8 F -0.19 -3.74 16.80 44.97 0.76 -2.98 16 9 C 0.12 3.79 5.11 85.56 0.44 4.22 16 10 C -0.19 -7.79 4.91 -19.68 -0.10 -7.89 16 11 C -0.09 -4.09 7.87 22.22 0.17 -3.92 16 12 C -0.19 -9.95 8.70 22.73 0.20 -9.75 16 13 C 0.08 4.32 5.58 -21.29 -0.12 4.20 16 14 C -0.50 -27.52 9.05 23.46 0.21 -27.30 16 15 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 16 C 0.04 1.82 5.14 85.26 0.44 2.26 16 17 N -0.82 -43.26 10.95 21.83 0.24 -43.02 16 18 Si 0.98 38.48 29.59 68.60 2.03 40.51 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 22 C -0.25 -12.09 9.80 22.73 0.22 -11.87 16 23 C -0.07 -3.05 9.67 22.22 0.21 -2.84 16 24 H 0.08 1.83 6.47 -2.39 -0.02 1.81 16 25 H 0.05 1.87 5.90 -2.38 -0.01 1.85 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.95 7.78 -2.38 -0.02 0.93 16 28 H 0.09 1.75 7.59 -2.39 -0.02 1.73 16 29 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.12 1.80 6.55 -2.39 -0.02 1.79 16 31 H 0.08 2.29 7.87 -2.38 -0.02 2.27 16 32 H 0.04 1.04 8.06 -2.39 -0.02 1.02 16 33 H 0.10 4.02 8.00 -2.91 -0.02 4.00 16 34 H 0.10 5.35 6.15 -2.91 -0.02 5.33 16 35 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 36 H 0.09 4.36 8.06 -2.92 -0.02 4.34 16 37 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -58.34 318.36 4.86 -53.48 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 1.08 Total: 20.72 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 3.62 Total: -43.67 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -4.17 Total: -62.20 kcal Atomic # 9 Polarization: -11.14 SS G_CDS: 2.29 Total: -8.85 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -58.34 4.86 -53.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342725101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.598 kcal (2) G-P(sol) polarization free energy of solvation -58.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds