Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 C 1.38254 * 120.00105 * 79.99697 * 4 2 1 6 6 C 1.38215 * 119.99945 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.00120 * 0.02562 * 6 5 4 8 8 C 1.38214 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99903 * 180.02562 * 8 7 6 10 10 F 1.39899 * 109.46975 * 359.97438 * 9 8 7 11 11 F 1.39896 * 109.47197 * 119.99579 * 9 8 7 12 12 F 1.39898 * 109.46800 * 239.99628 * 9 8 7 13 13 C 1.38214 * 119.99826 * 259.72932 * 4 2 1 14 14 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 15 15 C 1.46901 * 110.99788 * 183.95405 * 14 2 1 16 16 C 1.46901 * 110.99790 * 60.00351 * 14 2 1 17 17 C 1.50701 * 109.46921 * 189.99765 * 16 14 2 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 14 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47294 * 60.00559 * 21 19 17 23 23 H 1.48503 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47431 * 300.00157 * 21 19 17 25 25 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 26 26 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 28 28 H 1.07996 * 120.00061 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.99922 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.00248 * 180.02562 * 7 6 5 31 31 H 1.08003 * 120.00236 * 359.97438 * 13 4 2 32 32 H 1.09001 * 109.47121 * 296.04690 * 15 14 2 33 33 H 1.09005 * 109.47342 * 56.04784 * 15 14 2 34 34 H 1.08999 * 109.46894 * 176.04703 * 15 14 2 35 35 H 1.09002 * 109.47401 * 69.99793 * 16 14 2 36 36 H 1.09001 * 109.46874 * 309.99805 * 16 14 2 37 37 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0667 -2.0921 1.2653 6 6 2.5280 -2.7437 2.3936 7 6 2.9545 -2.0137 3.4877 8 6 2.9191 -0.6324 3.4532 9 6 3.3846 0.1632 4.6454 10 9 3.8022 -0.7106 5.6549 11 9 4.4518 0.9858 4.2692 12 9 2.3314 0.9529 5.1189 13 6 2.4639 0.0193 2.3220 14 7 2.0197 -0.6925 -1.1994 15 6 3.4851 -0.7945 -1.1870 16 6 1.5488 -0.0263 -2.4211 17 6 1.8581 -0.8911 -3.6159 18 1 2.3545 -1.8407 -3.4812 19 6 1.5065 -0.4703 -4.8810 20 7 0.9016 0.6858 -5.0449 21 14 1.8893 -1.5425 -6.3619 22 1 1.2036 -2.8517 -6.2158 23 1 1.4133 -0.8691 -7.5969 24 1 3.3558 -1.7590 -6.4505 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7340 -2.6623 0.4106 29 1 2.5552 -3.8229 2.4207 30 1 3.3153 -2.5228 4.3691 31 1 2.4416 1.0988 2.2930 32 1 3.9193 0.2044 -1.2299 33 1 3.8070 -1.2915 -0.2718 34 1 3.8165 -1.3721 -2.0499 35 1 2.0520 0.9346 -2.5280 36 1 0.4723 0.1324 -2.3564 37 1 0.6545 0.9820 -5.9350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346271124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -123.759545 kcal Electronic energy + Delta-G solvation = -22773.879257 eV Core-core repulsion = 18908.122896 eV Total energy + Delta-G solvation = -3865.756360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.24767 -47.77968 -47.69614 -39.77617 -36.93319 -33.08091 -31.85913 -31.60069 -29.43169 -27.28818 -26.04318 -24.48636 -23.63276 -22.33204 -21.41451 -19.63572 -18.56627 -18.43653 -17.86278 -16.44320 -16.23135 -15.61834 -14.77352 -14.69436 -14.60644 -14.50319 -14.15941 -14.11263 -13.93598 -13.88395 -13.86925 -13.55992 -13.02647 -12.69852 -12.53863 -12.23798 -11.88228 -11.70976 -11.38235 -11.18839 -11.07198 -10.89706 -10.83936 -10.62448 -10.30531 -9.79124 -9.28532 -9.14814 -8.76324 -8.44814 -7.34909 -6.06170 -4.07332 0.97476 1.25283 2.58658 3.31046 3.35519 3.37869 3.51066 3.64851 3.94377 4.35477 4.39020 4.72187 4.78012 4.89904 5.08290 5.29670 5.35342 5.39671 5.55198 5.71885 5.81291 5.87520 5.99434 6.09269 6.19534 6.27345 6.33053 6.41246 6.59594 6.66409 6.72995 6.82202 7.24982 7.29142 7.74921 8.03029 8.13070 8.48457 8.99484 9.56714 11.04700 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.003539 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.613309 B = 7910.590313 C = 8102.071064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.114 3.886 3 H 0.041 0.959 4 C -0.063 4.063 5 C -0.057 4.057 6 C -0.127 4.127 7 C -0.083 4.083 8 C -0.189 4.189 9 C 0.509 3.491 10 F -0.181 7.181 11 F -0.178 7.178 12 F -0.179 7.179 13 C -0.072 4.072 14 N -0.532 5.532 15 C 0.035 3.965 16 C 0.189 3.811 17 C -0.508 4.508 18 H 0.062 0.938 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.012 0.988 33 H 0.046 0.954 34 H 0.074 0.926 35 H -0.010 1.010 36 H 0.039 0.961 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 -3.170 18.173 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.005 3.995 3 H 0.059 0.941 4 C -0.064 4.064 5 C -0.075 4.075 6 C -0.145 4.145 7 C -0.101 4.101 8 C -0.191 4.191 9 C 0.455 3.545 10 F -0.162 7.162 11 F -0.160 7.160 12 F -0.160 7.160 13 C -0.090 4.090 14 N -0.257 5.257 15 C -0.114 4.114 16 C 0.064 3.936 17 C -0.547 4.547 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.008 0.992 36 H 0.057 0.943 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.882 -3.490 18.050 18.609 hybrid contribution 0.669 0.561 -0.656 1.092 sum 3.552 -2.929 17.394 17.993 Atomic orbital electron populations 1.21864 0.93417 1.02698 1.01703 1.20549 0.95901 0.94610 0.88422 0.94143 1.20013 0.97252 0.94163 0.94922 1.21468 0.94185 0.94234 0.97617 1.21200 0.99942 1.00272 0.93041 1.20920 0.97996 0.91861 0.99361 1.19815 1.09834 0.94837 0.94593 1.18358 0.75128 0.77867 0.83120 1.93144 1.90587 1.69240 1.63225 1.93214 1.57580 1.73900 1.91271 1.93208 1.57383 1.75726 1.89703 1.20758 0.96371 1.00226 0.91659 1.62243 1.09361 1.52029 1.02061 1.22261 0.88638 0.99316 1.01180 1.19838 0.96243 0.92565 0.84909 1.21100 1.38330 1.04809 0.90412 0.91936 1.24973 0.95315 0.95212 0.99035 1.69940 1.40958 1.20047 1.22861 0.86568 0.78652 0.80493 0.81725 1.20162 1.21373 1.20316 0.90943 0.91847 0.93186 0.83715 0.85040 0.85020 0.85376 0.96988 0.93506 0.90691 0.99175 0.94302 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.97 37.16 0.33 -1.90 16 2 C 0.11 1.93 2.28 -68.86 -0.16 1.77 16 3 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 4 C -0.06 -0.91 3.71 -104.62 -0.39 -1.30 16 5 C -0.06 -0.76 8.11 -39.58 -0.32 -1.08 16 6 C -0.13 -1.41 10.05 -39.58 -0.40 -1.80 16 7 C -0.08 -0.92 9.43 -39.58 -0.37 -1.29 16 8 C -0.19 -2.33 5.37 -104.62 -0.56 -2.89 16 9 C 0.51 6.06 3.32 36.01 0.12 6.18 16 10 F -0.18 -2.05 15.97 2.25 0.04 -2.01 16 11 F -0.18 -2.24 17.23 2.25 0.04 -2.21 16 12 F -0.18 -2.19 17.24 2.25 0.04 -2.15 16 13 C -0.07 -0.95 9.22 -39.58 -0.37 -1.31 16 14 N -0.53 -10.69 3.96 -237.72 -0.94 -11.63 16 15 C 0.03 0.65 8.95 60.07 0.54 1.19 16 16 C 0.19 4.69 4.54 -4.97 -0.02 4.67 16 17 C -0.51 -13.75 8.51 -34.44 -0.29 -14.05 16 18 H 0.06 1.67 7.10 -52.49 -0.37 1.30 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 21 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.07 1.29 6.20 -51.93 -0.32 0.97 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.15 2.05 7.72 -52.49 -0.41 1.64 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.20 7.16 -52.49 -0.38 0.82 16 31 H 0.13 1.59 8.03 -52.48 -0.42 1.17 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.77 6.02 -51.93 -0.31 0.46 16 34 H 0.07 1.51 6.86 -51.93 -0.36 1.15 16 35 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 36 H 0.04 1.01 5.83 -51.93 -0.30 0.71 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -28.30 318.30 -6.83 -35.13 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -4.53 Total: -2.36 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.99 Total: -10.37 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.21 Total: -36.99 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.11 Total: -6.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.30 -6.83 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346271124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.627 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds