Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50700 * 109.47170 * 120.00200 * 2 1 3 5 5 C 1.38254 * 120.00105 * 79.99697 * 4 2 1 6 6 C 1.38215 * 119.99945 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.00120 * 0.02562 * 6 5 4 8 8 C 1.38214 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99903 * 180.02562 * 8 7 6 10 10 F 1.39899 * 109.46975 * 359.97438 * 9 8 7 11 11 F 1.39896 * 109.47197 * 119.99579 * 9 8 7 12 12 F 1.39898 * 109.46800 * 239.99628 * 9 8 7 13 13 C 1.38214 * 119.99826 * 259.72932 * 4 2 1 14 14 N 1.46903 * 109.47236 * 239.99893 * 2 1 3 15 15 C 1.46901 * 110.99788 * 183.95405 * 14 2 1 16 16 C 1.46901 * 110.99790 * 60.00351 * 14 2 1 17 17 C 1.50701 * 109.46921 * 189.99765 * 16 14 2 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 14 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47294 * 60.00559 * 21 19 17 23 23 H 1.48503 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47431 * 300.00157 * 21 19 17 25 25 H 1.09001 * 109.46845 * 59.99829 * 1 2 3 26 26 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47011 * 300.00194 * 1 2 3 28 28 H 1.07996 * 120.00061 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.99922 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.00248 * 180.02562 * 7 6 5 31 31 H 1.08003 * 120.00236 * 359.97438 * 13 4 2 32 32 H 1.09001 * 109.47121 * 296.04690 * 15 14 2 33 33 H 1.09005 * 109.47342 * 56.04784 * 15 14 2 34 34 H 1.08999 * 109.46894 * 176.04703 * 15 14 2 35 35 H 1.09002 * 109.47401 * 69.99793 * 16 14 2 36 36 H 1.09001 * 109.46874 * 309.99805 * 16 14 2 37 37 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0667 -2.0921 1.2653 6 6 2.5280 -2.7437 2.3936 7 6 2.9545 -2.0137 3.4877 8 6 2.9191 -0.6324 3.4532 9 6 3.3846 0.1632 4.6454 10 9 3.8022 -0.7106 5.6549 11 9 4.4518 0.9858 4.2692 12 9 2.3314 0.9529 5.1189 13 6 2.4639 0.0193 2.3220 14 7 2.0197 -0.6925 -1.1994 15 6 3.4851 -0.7945 -1.1870 16 6 1.5488 -0.0263 -2.4211 17 6 1.8581 -0.8911 -3.6159 18 1 2.3545 -1.8407 -3.4812 19 6 1.5065 -0.4703 -4.8810 20 7 0.9016 0.6858 -5.0449 21 14 1.8893 -1.5425 -6.3619 22 1 1.2036 -2.8517 -6.2158 23 1 1.4133 -0.8691 -7.5969 24 1 3.3558 -1.7590 -6.4505 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7340 -2.6623 0.4106 29 1 2.5552 -3.8229 2.4207 30 1 3.3153 -2.5228 4.3691 31 1 2.4416 1.0988 2.2930 32 1 3.9193 0.2044 -1.2299 33 1 3.8070 -1.2915 -0.2718 34 1 3.8165 -1.3721 -2.0499 35 1 2.0520 0.9346 -2.5280 36 1 0.4723 0.1324 -2.3564 37 1 0.6545 0.9820 -5.9350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346271124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = -138.476379 kcal Electronic energy + Delta-G solvation = -22774.517426 eV Core-core repulsion = 18908.122896 eV Total energy + Delta-G solvation = -3866.394530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.18514 -48.70059 -48.65350 -40.87723 -38.38655 -34.95541 -33.22629 -32.73617 -30.67538 -29.19780 -27.01110 -26.19227 -25.04179 -23.30953 -22.90378 -20.97813 -19.50829 -19.37481 -19.02672 -18.37627 -17.25411 -16.93392 -16.51905 -16.04250 -15.59533 -15.56954 -15.50560 -15.22340 -15.09438 -14.92813 -14.81597 -14.72593 -14.45618 -14.02777 -13.80014 -13.62536 -13.35719 -13.16513 -12.83902 -12.80882 -12.53184 -12.44123 -12.29537 -12.17253 -11.97771 -11.49230 -11.27876 -10.56389 -10.11549 -9.81612 -9.05937 -8.18092 -6.27173 -0.00779 0.27667 1.43162 1.45568 1.53340 1.64350 2.41407 2.52492 2.70189 3.00094 3.14883 3.28847 3.41592 3.66880 3.88115 4.13378 4.26112 4.31571 4.38533 4.46679 4.49625 4.68387 4.74505 4.85473 4.90412 4.99148 5.09096 5.15273 5.23377 5.27093 5.35337 5.41920 5.56858 5.69900 5.83430 6.08255 6.32113 6.62199 6.88500 7.42047 8.92803 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.003539 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.613309 B = 7910.590313 C = 8102.071064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.114 3.886 3 H 0.030 0.970 4 C -0.076 4.076 5 C -0.066 4.066 6 C -0.115 4.115 7 C -0.074 4.074 8 C -0.193 4.193 9 C 0.514 3.486 10 F -0.175 7.175 11 F -0.183 7.183 12 F -0.182 7.182 13 C -0.077 4.077 14 N -0.531 5.531 15 C 0.041 3.959 16 C 0.204 3.796 17 C -0.522 4.522 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.269 1.269 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.130 0.870 32 H 0.002 0.998 33 H 0.075 0.925 34 H 0.060 0.940 35 H -0.044 1.044 36 H 0.022 0.978 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -5.092 19.574 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.005 3.995 3 H 0.048 0.952 4 C -0.077 4.077 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.092 4.092 8 C -0.195 4.195 9 C 0.460 3.540 10 F -0.156 7.156 11 F -0.165 7.165 12 F -0.163 7.163 13 C -0.095 4.095 14 N -0.255 5.255 15 C -0.107 4.107 16 C 0.078 3.922 17 C -0.560 4.560 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.153 0.847 29 H 0.181 0.819 30 H 0.176 0.824 31 H 0.148 0.852 32 H 0.021 0.979 33 H 0.093 0.907 34 H 0.079 0.921 35 H -0.026 1.026 36 H 0.040 0.960 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.621 -5.421 19.477 20.539 hybrid contribution 0.452 1.164 -0.970 1.581 sum 4.073 -4.257 18.507 19.422 Atomic orbital electron populations 1.21801 0.92972 1.02717 1.01578 1.20561 0.96385 0.94206 0.88311 0.95212 1.19696 0.99210 0.94664 0.94098 1.21461 0.94913 0.93620 0.98415 1.21479 0.98211 1.01789 0.91760 1.21265 0.96556 0.91300 1.00106 1.19906 1.09732 0.95570 0.94250 1.18271 0.74895 0.77748 0.83113 1.93155 1.90508 1.68975 1.62944 1.93208 1.57831 1.74103 1.91344 1.93206 1.57520 1.75848 1.89729 1.20752 0.96546 1.00439 0.91778 1.62143 1.10145 1.51660 1.01569 1.22213 0.87765 0.98818 1.01931 1.19491 0.94877 0.91046 0.86826 1.21447 1.38075 1.05032 0.91450 0.91731 1.25867 0.95053 0.96462 1.02159 1.70075 1.42091 1.21818 1.23564 0.85480 0.78788 0.78798 0.77809 1.19182 1.21134 1.19424 0.93612 0.91687 0.90655 0.84714 0.81940 0.82446 0.85222 0.97914 0.90661 0.92118 1.02650 0.96007 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.97 71.98 0.65 -3.69 16 2 C 0.11 3.91 2.28 44.17 0.10 4.01 16 3 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 4 C -0.08 -2.12 3.71 -19.87 -0.07 -2.19 16 5 C -0.07 -1.63 8.11 22.27 0.18 -1.45 16 6 C -0.11 -2.14 10.05 22.27 0.22 -1.91 16 7 C -0.07 -1.37 9.43 22.27 0.21 -1.16 16 8 C -0.19 -4.27 5.37 -19.86 -0.11 -4.37 16 9 C 0.51 11.08 3.32 71.24 0.24 11.31 16 10 F -0.17 -3.45 15.97 44.97 0.72 -2.73 16 11 F -0.18 -4.31 17.23 44.97 0.77 -3.53 16 12 F -0.18 -4.13 17.24 44.97 0.78 -3.35 16 13 C -0.08 -1.92 9.22 22.27 0.21 -1.72 16 14 N -0.53 -21.77 3.96 -906.01 -3.59 -25.36 16 15 C 0.04 1.56 8.95 127.69 1.14 2.70 16 16 C 0.20 10.52 4.54 85.56 0.39 10.91 16 17 C -0.52 -28.81 8.51 25.60 0.22 -28.59 16 18 H 0.06 3.47 7.10 -2.91 -0.02 3.44 16 19 C 0.00 0.14 5.46 84.66 0.46 0.60 16 20 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 21 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H 0.04 1.71 6.20 -2.39 -0.01 1.69 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.13 3.62 7.72 -2.91 -0.02 3.60 16 29 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.16 2.12 7.16 -2.91 -0.02 2.10 16 31 H 0.13 3.13 8.03 -2.91 -0.02 3.11 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.07 2.41 6.02 -2.38 -0.01 2.39 16 34 H 0.06 2.45 6.86 -2.39 -0.02 2.43 16 35 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 36 H 0.02 1.20 5.83 -2.39 -0.01 1.19 16 37 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -61.39 318.30 5.91 -55.49 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.08 Total: 4.81 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.83 Total: -15.56 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.30 Total: -80.70 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 2.27 Total: -9.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -61.39 5.91 -55.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346271124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.989 kcal (2) G-P(sol) polarization free energy of solvation -61.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds