Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.53002 * 109.46851 * 119.99908 * 2 1 3 5 5 O 1.42907 * 109.46936 * 182.25467 * 4 2 1 6 6 N 1.46493 * 109.47069 * 239.99775 * 2 1 3 7 7 C 1.46502 * 120.00476 * 303.74491 * 6 2 1 8 8 C 1.53005 * 109.46838 * 269.99955 * 7 6 2 9 9 C 1.53778 * 113.61396 * 274.13031 * 8 7 6 10 10 C 1.53950 * 87.02039 * 220.04937 * 9 8 7 11 11 C 1.53777 * 113.61257 * 176.52223 * 8 7 6 12 12 C 1.34774 * 120.00003 * 123.74227 * 6 2 1 13 13 O 1.21279 * 120.00284 * 184.73063 * 12 6 2 14 14 C 1.50703 * 119.99940 * 4.73037 * 12 6 2 15 15 S 1.80999 * 109.47351 * 174.82739 * 14 12 6 16 16 C 1.76192 * 100.00228 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00072 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00411 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46806 * 120.00176 * 20 18 16 23 23 H 1.48501 * 109.47042 * 240.00219 * 20 18 16 24 24 H 1.08998 * 109.47199 * 175.92161 * 1 2 3 25 25 H 1.09002 * 109.46940 * 295.91862 * 1 2 3 26 26 H 1.08997 * 109.46683 * 55.91687 * 1 2 3 27 27 H 1.08998 * 109.47236 * 302.25418 * 4 2 1 28 28 H 1.09000 * 109.47284 * 62.25953 * 4 2 1 29 29 H 0.96698 * 113.99773 * 180.02562 * 5 4 2 30 30 H 1.09003 * 109.46769 * 29.99194 * 7 6 2 31 31 H 1.08996 * 109.47476 * 149.99647 * 7 6 2 32 32 H 1.08997 * 112.84790 * 45.33489 * 8 7 6 33 33 H 1.08997 * 113.61369 * 334.57546 * 9 8 7 34 34 H 1.09005 * 113.60956 * 105.47549 * 9 8 7 35 35 H 1.09008 * 113.53791 * 270.81493 * 10 9 8 36 36 H 1.08994 * 113.66883 * 139.93313 * 10 9 8 37 37 H 1.08995 * 113.61955 * 254.53075 * 11 8 7 38 38 H 1.09002 * 113.61554 * 25.35114 * 11 8 7 39 39 H 1.08995 * 109.46917 * 294.82884 * 14 12 6 40 40 H 1.09000 * 109.47362 * 54.83001 * 14 12 6 41 41 H 0.96994 * 120.00701 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4681 -0.6755 1.2761 6 7 2.0183 -0.6906 -1.1961 7 6 1.5981 -2.0671 -1.4702 8 6 2.5827 -3.0402 -0.8186 9 6 3.8068 -3.3563 -1.6941 10 6 3.6747 -4.8125 -1.2125 11 6 2.1842 -4.5171 -0.9758 12 6 2.8542 -0.0597 -2.0445 13 8 3.1905 -0.5989 -3.0775 14 6 3.3710 1.3157 -1.7095 15 16 4.5791 1.8267 -2.9567 16 6 5.0044 3.4199 -2.3361 17 1 4.5404 3.7894 -1.4336 18 6 5.9358 4.2001 -3.0071 19 7 6.5010 3.7501 -4.1073 20 14 6.3862 5.8896 -2.3495 21 1 5.6160 6.1593 -1.1089 22 1 7.8397 5.9321 -2.0484 23 1 6.0613 6.9200 -3.3683 24 1 -0.3633 -1.0250 -0.0731 25 1 -0.3633 0.4492 0.9243 26 1 -0.3632 0.5759 -0.8511 27 1 1.6440 -0.2313 2.1388 28 1 1.7101 -1.7599 1.2293 29 1 3.8613 -1.1150 2.0425 30 1 0.6011 -2.2308 -1.0611 31 1 1.5809 -2.2341 -2.5471 32 1 2.8373 -2.7632 0.2044 33 1 3.6244 -3.2310 -2.7614 34 1 4.7212 -2.8661 -1.3595 35 1 4.2293 -5.0204 -0.2973 36 1 3.8549 -5.5501 -1.9945 37 1 1.7904 -4.9627 -0.0624 38 1 1.5561 -4.7097 -1.8456 39 1 2.5413 2.0223 -1.6964 40 1 3.8471 1.2962 -0.7291 41 1 7.1522 4.2951 -4.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348298541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -68.325117 kcal Electronic energy + Delta-G solvation = -21633.860675 eV Core-core repulsion = 18447.808823 eV Total energy + Delta-G solvation = -3186.051852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09140 -38.14131 -37.23007 -35.19713 -32.36209 -31.31222 -30.08259 -27.28015 -26.30284 -25.47539 -25.37652 -22.88517 -21.76435 -19.40129 -18.90430 -17.70056 -17.41510 -16.61050 -15.93394 -15.51277 -15.25926 -14.74603 -14.52936 -14.38726 -13.91995 -13.78576 -13.31490 -12.85256 -12.72200 -12.51467 -12.38361 -12.33117 -12.10389 -11.86759 -11.52695 -11.31022 -11.04227 -11.02107 -10.93533 -10.69967 -10.59332 -10.32967 -10.09648 -9.99953 -9.70375 -9.15672 -9.00794 -8.34393 -8.11574 -6.39981 -6.14972 -3.83657 3.01685 3.24825 3.26115 3.30454 3.35279 3.69076 4.04711 4.27167 4.64760 4.70711 4.76207 4.84506 4.88669 4.99480 5.07601 5.19877 5.20667 5.24989 5.27730 5.43190 5.54386 5.57471 5.61374 5.67548 5.72877 5.84359 5.86895 5.89876 5.96777 6.04765 6.10908 6.28688 6.31578 6.38172 6.62432 6.85578 7.56417 7.66472 7.71534 8.42508 8.75040 9.30484 10.92632 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.004529 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.242119 B = 6181.070583 C = 6755.913843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.102 0.898 4 C 0.062 3.938 5 O -0.557 6.557 6 N -0.606 5.606 7 C 0.124 3.876 8 C -0.127 4.127 9 C -0.125 4.125 10 C -0.144 4.144 11 C -0.135 4.135 12 C 0.542 3.458 13 O -0.516 6.516 14 C -0.149 4.149 15 S -0.063 6.063 16 C -0.531 4.531 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.917 3.083 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.375 0.625 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -13.451 12.688 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.120 0.880 4 C -0.017 4.017 5 O -0.361 6.361 6 N -0.341 5.341 7 C 0.001 3.999 8 C -0.147 4.147 9 C -0.163 4.163 10 C -0.182 4.182 11 C -0.173 4.173 12 C 0.330 3.670 13 O -0.390 6.390 14 C -0.300 4.300 15 S 0.164 5.836 16 C -0.679 4.679 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.221 0.779 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.847 -13.908 10.473 21.059 hybrid contribution -0.117 1.463 2.284 2.715 sum -11.963 -12.445 12.757 21.465 Atomic orbital electron populations 1.22097 0.94090 1.02762 1.03015 1.21175 0.93918 0.98019 0.84115 0.87955 1.22652 0.82197 0.99519 0.97289 1.86650 1.18920 1.80848 1.49724 1.47813 1.48608 1.13711 1.23977 1.21409 0.96475 0.80603 1.01390 1.23096 0.97240 0.93782 1.00558 1.22894 0.98290 0.94741 1.00337 1.22848 0.96356 0.97898 1.01063 1.22891 0.96882 0.96102 1.01408 1.20201 0.77106 0.87049 0.82605 1.90664 1.56506 1.67344 1.24494 1.23549 1.04215 0.95496 1.06712 1.85317 1.47668 1.19820 1.30842 1.22906 1.28873 1.02293 1.13861 0.91026 1.24973 0.95205 0.98688 0.94723 1.70029 1.26812 1.37346 1.16240 0.86144 0.78315 0.82385 0.78805 1.19648 1.20617 1.20621 0.91932 0.91263 0.91242 0.93156 0.93216 0.77885 0.91200 0.89819 0.88796 0.89519 0.91674 0.90744 0.91791 0.92056 0.90232 0.89875 0.88837 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.19 37.16 0.34 -1.06 16 2 C 0.13 1.55 2.80 -67.93 -0.19 1.36 16 3 H 0.10 1.35 5.83 -51.93 -0.30 1.05 16 4 C 0.06 0.60 5.71 37.16 0.21 0.81 16 5 O -0.56 -6.65 12.86 -35.23 -0.45 -7.10 16 6 N -0.61 -8.92 2.30 -166.11 -0.38 -9.30 16 7 C 0.12 1.56 4.78 -4.04 -0.02 1.54 16 8 C -0.13 -1.50 3.53 -89.81 -0.32 -1.82 16 9 C -0.13 -1.76 7.28 -25.83 -0.19 -1.95 16 10 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 11 C -0.13 -1.30 7.65 -25.92 -0.20 -1.50 16 12 C 0.54 10.80 7.68 -10.99 -0.08 10.71 16 13 O -0.52 -11.98 14.92 5.56 0.08 -11.90 16 14 C -0.15 -3.24 4.48 36.01 0.16 -3.08 16 15 S -0.06 -1.78 20.58 -107.50 -2.21 -3.99 16 16 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 17 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 20 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.06 0.48 6.37 -51.93 -0.33 0.15 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.42 6.15 -51.93 -0.32 0.10 16 29 H 0.37 2.79 9.12 45.56 0.42 3.21 16 30 H 0.07 0.69 6.16 -51.93 -0.32 0.37 16 31 H 0.08 1.22 7.09 -51.93 -0.37 0.85 16 32 H 0.09 1.09 5.08 -51.93 -0.26 0.82 16 33 H 0.09 1.38 7.78 -51.93 -0.40 0.98 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.08 1.69 7.76 -51.92 -0.40 1.28 16 40 H 0.09 2.00 7.81 -51.92 -0.41 1.59 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -35.37 341.29 -8.03 -43.40 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.63 Total: 2.89 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.29 Total: -9.98 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.35 Total: -35.31 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.37 Total: -19.00 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.37 -8.03 -43.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348298541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.925 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds