Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.53002 * 109.46851 * 119.99908 * 2 1 3 5 5 O 1.42907 * 109.46936 * 182.25467 * 4 2 1 6 6 N 1.46493 * 109.47069 * 239.99775 * 2 1 3 7 7 C 1.46502 * 120.00476 * 303.74491 * 6 2 1 8 8 C 1.53005 * 109.46838 * 269.99955 * 7 6 2 9 9 C 1.53778 * 113.61396 * 274.13031 * 8 7 6 10 10 C 1.53950 * 87.02039 * 220.04937 * 9 8 7 11 11 C 1.53777 * 113.61257 * 176.52223 * 8 7 6 12 12 C 1.34774 * 120.00003 * 123.74227 * 6 2 1 13 13 O 1.21279 * 120.00284 * 184.73063 * 12 6 2 14 14 C 1.50703 * 119.99940 * 4.73037 * 12 6 2 15 15 S 1.80999 * 109.47351 * 174.82739 * 14 12 6 16 16 C 1.76192 * 100.00228 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00072 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00411 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46806 * 120.00176 * 20 18 16 23 23 H 1.48501 * 109.47042 * 240.00219 * 20 18 16 24 24 H 1.08998 * 109.47199 * 175.92161 * 1 2 3 25 25 H 1.09002 * 109.46940 * 295.91862 * 1 2 3 26 26 H 1.08997 * 109.46683 * 55.91687 * 1 2 3 27 27 H 1.08998 * 109.47236 * 302.25418 * 4 2 1 28 28 H 1.09000 * 109.47284 * 62.25953 * 4 2 1 29 29 H 0.96698 * 113.99773 * 180.02562 * 5 4 2 30 30 H 1.09003 * 109.46769 * 29.99194 * 7 6 2 31 31 H 1.08996 * 109.47476 * 149.99647 * 7 6 2 32 32 H 1.08997 * 112.84790 * 45.33489 * 8 7 6 33 33 H 1.08997 * 113.61369 * 334.57546 * 9 8 7 34 34 H 1.09005 * 113.60956 * 105.47549 * 9 8 7 35 35 H 1.09008 * 113.53791 * 270.81493 * 10 9 8 36 36 H 1.08994 * 113.66883 * 139.93313 * 10 9 8 37 37 H 1.08995 * 113.61955 * 254.53075 * 11 8 7 38 38 H 1.09002 * 113.61554 * 25.35114 * 11 8 7 39 39 H 1.08995 * 109.46917 * 294.82884 * 14 12 6 40 40 H 1.09000 * 109.47362 * 54.83001 * 14 12 6 41 41 H 0.96994 * 120.00701 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4681 -0.6755 1.2761 6 7 2.0183 -0.6906 -1.1961 7 6 1.5981 -2.0671 -1.4702 8 6 2.5827 -3.0402 -0.8186 9 6 3.8068 -3.3563 -1.6941 10 6 3.6747 -4.8125 -1.2125 11 6 2.1842 -4.5171 -0.9758 12 6 2.8542 -0.0597 -2.0445 13 8 3.1905 -0.5989 -3.0775 14 6 3.3710 1.3157 -1.7095 15 16 4.5791 1.8267 -2.9567 16 6 5.0044 3.4199 -2.3361 17 1 4.5404 3.7894 -1.4336 18 6 5.9358 4.2001 -3.0071 19 7 6.5010 3.7501 -4.1073 20 14 6.3862 5.8896 -2.3495 21 1 5.6160 6.1593 -1.1089 22 1 7.8397 5.9321 -2.0484 23 1 6.0613 6.9200 -3.3683 24 1 -0.3633 -1.0250 -0.0731 25 1 -0.3633 0.4492 0.9243 26 1 -0.3632 0.5759 -0.8511 27 1 1.6440 -0.2313 2.1388 28 1 1.7101 -1.7599 1.2293 29 1 3.8613 -1.1150 2.0425 30 1 0.6011 -2.2308 -1.0611 31 1 1.5809 -2.2341 -2.5471 32 1 2.8373 -2.7632 0.2044 33 1 3.6244 -3.2310 -2.7614 34 1 4.7212 -2.8661 -1.3595 35 1 4.2293 -5.0204 -0.2973 36 1 3.8549 -5.5501 -1.9945 37 1 1.7904 -4.9627 -0.0624 38 1 1.5561 -4.7097 -1.8456 39 1 2.5413 2.0223 -1.6964 40 1 3.8471 1.2962 -0.7291 41 1 7.1522 4.2951 -4.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348298541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -93.626754 kcal Electronic energy + Delta-G solvation = -21634.957836 eV Core-core repulsion = 18447.808823 eV Total energy + Delta-G solvation = -3187.149013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31984 -39.28206 -38.27339 -36.28731 -34.59944 -32.28531 -31.63777 -28.59218 -27.62228 -27.03585 -26.41035 -23.91127 -22.87856 -20.38502 -20.34011 -19.44358 -18.33673 -18.07741 -17.16870 -16.89599 -16.72192 -16.33884 -15.78995 -15.59120 -15.40453 -15.04148 -14.58580 -14.41476 -13.90486 -13.68367 -13.37798 -13.27424 -13.17770 -13.14267 -12.96395 -12.92025 -12.62927 -12.54706 -12.27779 -11.96362 -11.70374 -11.51982 -11.28682 -11.16651 -11.04689 -10.81254 -10.72072 -10.26085 -9.55596 -8.67145 -8.35514 -6.13538 1.25529 1.40071 1.44571 1.56163 1.69238 2.13776 2.27229 2.98240 3.22968 3.32411 3.65159 3.78060 3.83858 3.84843 4.00389 4.08126 4.16036 4.26366 4.38830 4.43789 4.49874 4.51353 4.62853 4.67948 4.70502 4.86340 4.88190 4.92355 4.97279 5.06433 5.11266 5.15721 5.30532 5.38845 5.39932 5.63426 5.73730 6.18769 6.36356 6.96906 7.05240 7.24998 8.74316 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.004529 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.242119 B = 6181.070583 C = 6755.913843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 H 0.082 0.918 4 C 0.064 3.936 5 O -0.591 6.591 6 N -0.590 5.590 7 C 0.121 3.879 8 C -0.121 4.121 9 C -0.143 4.143 10 C -0.136 4.136 11 C -0.117 4.117 12 C 0.537 3.463 13 O -0.561 6.561 14 C -0.119 4.119 15 S -0.150 6.150 16 C -0.545 4.545 17 H 0.078 0.922 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.271 1.271 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.393 0.607 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 -13.804 15.828 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.014 4.014 5 O -0.399 6.399 6 N -0.323 5.323 7 C -0.001 4.001 8 C -0.141 4.141 9 C -0.181 4.181 10 C -0.173 4.173 11 C -0.154 4.154 12 C 0.325 3.675 13 O -0.440 6.440 14 C -0.270 4.270 15 S 0.077 5.923 16 C -0.693 4.693 17 H 0.096 0.904 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.196 1.196 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.242 0.758 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.982 -14.291 13.673 24.221 hybrid contribution 0.488 1.505 1.354 2.082 sum -13.494 -12.786 15.027 23.903 Atomic orbital electron populations 1.22063 0.91135 1.03982 1.03971 1.21581 0.96247 0.97027 0.83699 0.89977 1.22720 0.81209 1.00602 0.96848 1.86605 1.20490 1.81520 1.51296 1.47797 1.46380 1.14397 1.23721 1.21627 0.98716 0.79262 1.00495 1.23093 0.95625 0.95314 1.00023 1.22888 0.98217 0.97864 0.99111 1.22843 0.97748 0.95236 1.01487 1.22817 0.95928 0.93676 1.03012 1.19939 0.78094 0.86486 0.83007 1.90649 1.58660 1.68028 1.26617 1.23322 1.02469 0.97263 1.03951 1.85470 1.50829 1.21024 1.34945 1.23201 1.29517 1.02363 1.14246 0.90384 1.26135 0.94681 1.03473 0.94748 1.70188 1.27485 1.39376 1.17786 0.84898 0.78268 0.76120 0.78600 1.18125 1.19756 1.19644 0.90179 0.88537 0.92467 0.90228 0.91293 0.75809 0.87108 0.92270 0.87883 0.92504 0.95015 0.89488 0.91387 0.89088 0.89708 0.88546 0.88540 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 71.98 0.66 -1.45 16 2 C 0.12 2.50 2.80 45.00 0.13 2.62 16 3 H 0.08 2.08 5.83 -2.39 -0.01 2.06 16 4 C 0.06 1.02 5.71 71.98 0.41 1.43 16 5 O -0.59 -13.10 12.86 -148.98 -1.92 -15.02 16 6 N -0.59 -16.99 2.30 -797.83 -1.84 -18.83 16 7 C 0.12 2.87 4.78 86.38 0.41 3.28 16 8 C -0.12 -2.67 3.53 -10.27 -0.04 -2.70 16 9 C -0.14 -4.18 7.28 31.18 0.23 -3.96 16 10 C -0.14 -2.74 8.09 31.18 0.25 -2.49 16 11 C -0.12 -1.89 7.65 31.12 0.24 -1.65 16 12 C 0.54 22.18 7.68 87.66 0.67 22.85 16 13 O -0.56 -27.75 14.92 -3.03 -0.05 -27.79 16 14 C -0.12 -5.34 4.48 71.24 0.32 -5.02 16 15 S -0.15 -8.87 20.58 -56.49 -1.16 -10.04 16 16 C -0.55 -32.75 9.50 67.95 0.65 -32.10 16 17 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.84 5.49 84.86 0.47 1.30 16 19 N -0.91 -57.72 13.22 21.65 0.29 -57.43 16 20 Si 1.00 45.00 29.55 68.60 2.03 47.02 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H 0.08 0.83 6.37 -2.39 -0.02 0.82 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.85 6.15 -2.39 -0.01 0.83 16 29 H 0.39 5.08 9.12 -74.06 -0.68 4.40 16 30 H 0.11 1.75 6.16 -2.39 -0.01 1.73 16 31 H 0.06 1.74 7.09 -2.39 -0.02 1.72 16 32 H 0.10 2.11 5.08 -2.39 -0.01 2.10 16 33 H 0.06 1.98 7.78 -2.39 -0.02 1.96 16 34 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 39 H 0.10 4.00 7.76 -2.40 -0.02 3.98 16 40 H 0.10 4.23 7.81 -2.40 -0.02 4.22 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -82.28 341.29 2.10 -80.18 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.35 Total: 19.78 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.40 Total: -17.87 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.55 Total: -76.27 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.96 Total: -42.81 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.04 kcal Total: -82.28 2.10 -80.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348298541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.448 kcal (2) G-P(sol) polarization free energy of solvation -82.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds