Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.53004 * 109.47322 * 240.00292 * 2 1 3 5 5 O 1.42897 * 109.47595 * 177.51590 * 4 2 1 6 6 N 1.46495 * 109.47718 * 120.00278 * 2 1 3 7 7 C 1.46506 * 120.00141 * 59.26081 * 6 2 1 8 8 C 1.52999 * 109.46698 * 90.00599 * 7 6 2 9 9 C 1.53786 * 113.61301 * 185.00246 * 8 7 6 10 10 C 1.53776 * 87.17105 * 220.06087 * 9 8 7 11 11 C 1.53787 * 87.08556 * 25.38866 * 10 9 8 12 12 C 1.34779 * 120.00114 * 239.27316 * 6 2 1 13 13 O 1.21275 * 120.00041 * 185.32881 * 12 6 2 14 14 C 1.50702 * 119.99807 * 5.31648 * 12 6 2 15 15 S 1.80999 * 109.46913 * 183.45872 * 14 12 6 16 16 C 1.76201 * 99.99997 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00004 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99925 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99854 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47476 * 89.99620 * 20 18 16 22 22 H 1.48499 * 109.46904 * 209.99314 * 20 18 16 23 23 H 1.48497 * 109.47263 * 329.99520 * 20 18 16 24 24 H 1.08997 * 109.47098 * 300.75010 * 1 2 3 25 25 H 1.08999 * 109.47491 * 60.75008 * 1 2 3 26 26 H 1.09009 * 109.46927 * 180.75149 * 1 2 3 27 27 H 1.09001 * 109.46807 * 297.51462 * 4 2 1 28 28 H 1.09007 * 109.46963 * 57.50736 * 4 2 1 29 29 H 0.96698 * 113.99843 * 180.02562 * 5 4 2 30 30 H 1.08994 * 109.46791 * 330.00727 * 7 6 2 31 31 H 1.08996 * 109.47213 * 210.00857 * 7 6 2 32 32 H 1.09006 * 112.90738 * 316.25177 * 8 7 6 33 33 H 1.09001 * 113.61368 * 105.46586 * 9 8 7 34 34 H 1.09000 * 113.60950 * 334.65266 * 9 8 7 35 35 H 1.08999 * 113.61479 * 139.93877 * 10 9 8 36 36 H 1.09004 * 113.61388 * 270.83581 * 10 9 8 37 37 H 1.09000 * 113.60939 * 89.11096 * 11 10 9 38 38 H 1.08992 * 113.61787 * 219.93521 * 11 10 9 39 39 H 1.08996 * 109.47674 * 303.46011 * 14 12 6 40 40 H 1.09003 * 109.46671 * 63.46380 * 14 12 6 41 41 H 0.96999 * 120.00004 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 3.4678 -0.6709 -1.2789 6 7 2.0184 -0.6906 1.1960 7 6 1.6513 -2.0885 1.4361 8 6 2.6925 -3.0068 0.7931 9 6 2.3359 -4.5000 0.8824 10 6 3.8236 -4.7598 1.1720 11 6 3.8897 -3.3202 1.7089 12 6 2.8054 -0.0400 2.0758 13 8 3.2886 -0.6372 3.0142 14 6 3.0851 1.4295 1.8931 15 16 4.2456 1.9856 3.1659 16 6 4.3894 3.6860 2.7271 17 1 3.8383 4.0744 1.8833 18 6 5.2109 4.5263 3.4657 19 7 5.3188 5.7964 3.1375 20 14 6.1646 3.8543 4.9245 21 1 7.4911 3.3680 4.4673 22 1 6.3518 4.9297 5.9313 23 1 5.4091 2.7309 5.5348 24 1 -0.3633 0.5254 0.8832 25 1 -0.3634 0.5021 -0.8966 26 1 -0.3633 -1.0277 0.0135 27 1 1.7135 -1.7609 -1.2273 28 1 1.6406 -0.2337 -2.1387 29 1 3.8609 -1.1093 -2.0459 30 1 0.6725 -2.2871 0.9995 31 1 1.6151 -2.2755 2.5093 32 1 2.9808 -2.6858 -0.2080 33 1 1.9941 -4.9246 -0.0615 34 1 1.6794 -4.7428 1.7181 35 1 3.9937 -5.5188 1.9356 36 1 4.4217 -4.9192 0.2748 37 1 3.6582 -3.2393 2.7709 38 1 4.8029 -2.7929 1.4333 39 1 3.5192 1.5971 0.9075 40 1 2.1543 1.9901 1.9802 41 1 5.8926 6.3838 3.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348298542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -68.305408 kcal Electronic energy + Delta-G solvation = -21649.279312 eV Core-core repulsion = 18463.228315 eV Total energy + Delta-G solvation = -3186.050997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17756 -38.20923 -37.30992 -35.27684 -32.38276 -31.39074 -30.21360 -27.37504 -26.33559 -25.56147 -25.47127 -22.97550 -21.84478 -19.44821 -19.01324 -17.73147 -17.45998 -16.72731 -15.98960 -15.55873 -15.33489 -14.91390 -14.60765 -14.41044 -13.99525 -13.72824 -13.40753 -12.94789 -12.80817 -12.74291 -12.42985 -12.37569 -12.15668 -11.95711 -11.65370 -11.39242 -11.19992 -11.05139 -10.95312 -10.68240 -10.49932 -10.34018 -10.14038 -10.07727 -9.79800 -9.28047 -8.94817 -8.43711 -8.40440 -6.83380 -6.23654 -3.93768 2.79800 3.11155 3.25178 3.37552 3.55153 3.65323 3.99405 4.38254 4.57642 4.64248 4.70096 4.72190 4.83848 4.92663 4.96068 5.10023 5.15661 5.17989 5.22715 5.25677 5.42606 5.52757 5.53318 5.57026 5.68401 5.78438 5.79827 5.84845 5.88964 5.92287 6.04716 6.13361 6.24114 6.33231 6.57385 6.77090 7.50487 7.60745 7.99666 8.47105 8.61499 9.23053 10.85769 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.004805 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.453821 B = 5825.521646 C = 6559.304877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.104 0.896 4 C 0.063 3.937 5 O -0.558 6.558 6 N -0.605 5.605 7 C 0.127 3.873 8 C -0.128 4.128 9 C -0.135 4.135 10 C -0.145 4.145 11 C -0.122 4.122 12 C 0.539 3.461 13 O -0.515 6.515 14 C -0.121 4.121 15 S -0.144 6.144 16 C -0.518 4.518 17 H 0.087 0.913 18 C 0.096 3.904 19 N -0.882 5.882 20 Si 0.856 3.144 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.235 1.235 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.375 0.625 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -18.390 -10.477 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.122 0.878 4 C -0.016 4.016 5 O -0.362 6.362 6 N -0.339 5.339 7 C 0.004 3.996 8 C -0.148 4.148 9 C -0.173 4.173 10 C -0.183 4.183 11 C -0.159 4.159 12 C 0.327 3.673 13 O -0.389 6.389 14 C -0.271 4.271 15 S 0.083 5.917 16 C -0.666 4.666 17 H 0.105 0.895 18 C -0.113 4.113 19 N -0.519 5.519 20 Si 0.681 3.319 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.159 1.159 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.222 0.778 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.420 -18.765 -8.503 22.653 hybrid contribution -0.082 0.468 -1.205 1.295 sum -9.502 -18.297 -9.708 22.789 Atomic orbital electron populations 1.22102 0.94011 1.02653 1.03234 1.21219 0.94061 0.98076 0.84007 0.87812 1.22625 0.82121 0.99540 0.97287 1.86639 1.19026 1.80861 1.49722 1.47805 1.51444 1.11823 1.22853 1.21404 0.96635 0.80174 1.01367 1.23142 0.97151 0.93809 1.00660 1.22897 0.96974 0.96117 1.01332 1.22829 0.96436 0.98084 1.00929 1.22863 0.98453 0.94727 0.99856 1.20160 0.77116 0.88623 0.81385 1.90664 1.48641 1.68433 1.31209 1.23311 1.04243 0.94416 1.05140 1.84726 1.57259 1.10939 1.38803 1.22327 1.33154 0.91699 1.19405 0.89511 1.24701 0.95388 0.94079 0.97108 1.69943 1.38047 1.04029 1.39919 0.86736 0.81831 0.80405 0.82892 1.19259 1.20027 1.15919 0.91150 0.91161 0.92037 0.93172 0.92938 0.77823 0.91127 0.90043 0.88535 0.92050 0.90288 0.91843 0.90734 0.89645 0.91780 0.88502 0.88936 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.17 37.15 0.34 -1.02 16 2 C 0.13 1.47 2.84 -67.93 -0.19 1.28 16 3 H 0.10 1.33 5.75 -51.93 -0.30 1.03 16 4 C 0.06 0.58 5.67 37.16 0.21 0.79 16 5 O -0.56 -6.36 12.55 -35.23 -0.44 -6.81 16 6 N -0.60 -8.46 2.31 -166.11 -0.38 -8.85 16 7 C 0.13 1.52 4.65 -4.04 -0.02 1.50 16 8 C -0.13 -1.45 3.47 -89.71 -0.31 -1.76 16 9 C -0.14 -1.24 7.64 -25.92 -0.20 -1.44 16 10 C -0.15 -1.49 8.08 -25.92 -0.21 -1.70 16 11 C -0.12 -1.63 6.83 -25.82 -0.18 -1.80 16 12 C 0.54 10.19 7.67 -10.98 -0.08 10.11 16 13 O -0.52 -11.29 14.44 5.56 0.08 -11.21 16 14 C -0.12 -2.50 4.55 36.01 0.16 -2.33 16 15 S -0.14 -3.77 18.55 -107.50 -1.99 -5.77 16 16 C -0.52 -15.30 10.04 30.94 0.31 -14.99 16 17 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 18 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 19 N -0.88 -27.07 13.97 55.49 0.78 -26.30 16 20 Si 0.86 22.28 27.74 -169.99 -4.72 17.56 16 21 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.45 6.61 -51.92 -0.34 0.10 16 27 H 0.05 0.40 6.26 -51.93 -0.33 0.08 16 28 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.38 2.60 9.12 45.56 0.42 3.02 16 30 H 0.07 0.66 6.37 -51.93 -0.33 0.32 16 31 H 0.08 1.12 7.21 -51.93 -0.37 0.74 16 32 H 0.10 1.08 4.93 -51.93 -0.26 0.83 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.29 7.66 -51.93 -0.40 0.89 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.97 7.38 -51.92 -0.38 1.59 16 40 H 0.09 1.80 8.09 -51.91 -0.42 1.38 16 41 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 337.43 15.07 5.08 5.08 Total: -1.00 -34.85 337.43 -7.53 -42.38 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.67 Total: 2.52 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.26 Total: -8.61 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.39 Total: -35.14 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.36 Total: -18.02 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.72 Total: 17.56 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.99 Total: -5.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.85 -7.53 -42.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348298542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.930 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds