Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.53004 * 109.47322 * 240.00292 * 2 1 3 5 5 O 1.42897 * 109.47595 * 177.51590 * 4 2 1 6 6 N 1.46495 * 109.47718 * 120.00278 * 2 1 3 7 7 C 1.46506 * 120.00141 * 59.26081 * 6 2 1 8 8 C 1.52999 * 109.46698 * 90.00599 * 7 6 2 9 9 C 1.53786 * 113.61301 * 185.00246 * 8 7 6 10 10 C 1.53776 * 87.17105 * 220.06087 * 9 8 7 11 11 C 1.53787 * 87.08556 * 25.38866 * 10 9 8 12 12 C 1.34779 * 120.00114 * 239.27316 * 6 2 1 13 13 O 1.21275 * 120.00041 * 185.32881 * 12 6 2 14 14 C 1.50702 * 119.99807 * 5.31648 * 12 6 2 15 15 S 1.80999 * 109.46913 * 183.45872 * 14 12 6 16 16 C 1.76201 * 99.99997 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00004 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99925 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99854 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47476 * 89.99620 * 20 18 16 22 22 H 1.48499 * 109.46904 * 209.99314 * 20 18 16 23 23 H 1.48497 * 109.47263 * 329.99520 * 20 18 16 24 24 H 1.08997 * 109.47098 * 300.75010 * 1 2 3 25 25 H 1.08999 * 109.47491 * 60.75008 * 1 2 3 26 26 H 1.09009 * 109.46927 * 180.75149 * 1 2 3 27 27 H 1.09001 * 109.46807 * 297.51462 * 4 2 1 28 28 H 1.09007 * 109.46963 * 57.50736 * 4 2 1 29 29 H 0.96698 * 113.99843 * 180.02562 * 5 4 2 30 30 H 1.08994 * 109.46791 * 330.00727 * 7 6 2 31 31 H 1.08996 * 109.47213 * 210.00857 * 7 6 2 32 32 H 1.09006 * 112.90738 * 316.25177 * 8 7 6 33 33 H 1.09001 * 113.61368 * 105.46586 * 9 8 7 34 34 H 1.09000 * 113.60950 * 334.65266 * 9 8 7 35 35 H 1.08999 * 113.61479 * 139.93877 * 10 9 8 36 36 H 1.09004 * 113.61388 * 270.83581 * 10 9 8 37 37 H 1.09000 * 113.60939 * 89.11096 * 11 10 9 38 38 H 1.08992 * 113.61787 * 219.93521 * 11 10 9 39 39 H 1.08996 * 109.47674 * 303.46011 * 14 12 6 40 40 H 1.09003 * 109.46671 * 63.46380 * 14 12 6 41 41 H 0.96999 * 120.00004 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 3.4678 -0.6709 -1.2789 6 7 2.0184 -0.6906 1.1960 7 6 1.6513 -2.0885 1.4361 8 6 2.6925 -3.0068 0.7931 9 6 2.3359 -4.5000 0.8824 10 6 3.8236 -4.7598 1.1720 11 6 3.8897 -3.3202 1.7089 12 6 2.8054 -0.0400 2.0758 13 8 3.2886 -0.6372 3.0142 14 6 3.0851 1.4295 1.8931 15 16 4.2456 1.9856 3.1659 16 6 4.3894 3.6860 2.7271 17 1 3.8383 4.0744 1.8833 18 6 5.2109 4.5263 3.4657 19 7 5.3188 5.7964 3.1375 20 14 6.1646 3.8543 4.9245 21 1 7.4911 3.3680 4.4673 22 1 6.3518 4.9297 5.9313 23 1 5.4091 2.7309 5.5348 24 1 -0.3633 0.5254 0.8832 25 1 -0.3634 0.5021 -0.8966 26 1 -0.3633 -1.0277 0.0135 27 1 1.7135 -1.7609 -1.2273 28 1 1.6406 -0.2337 -2.1387 29 1 3.8609 -1.1093 -2.0459 30 1 0.6725 -2.2871 0.9995 31 1 1.6151 -2.2755 2.5093 32 1 2.9808 -2.6858 -0.2080 33 1 1.9941 -4.9246 -0.0615 34 1 1.6794 -4.7428 1.7181 35 1 3.9937 -5.5188 1.9356 36 1 4.4217 -4.9192 0.2748 37 1 3.6582 -3.2393 2.7709 38 1 4.8029 -2.7929 1.4333 39 1 3.5192 1.5971 0.9075 40 1 2.1543 1.9901 1.9802 41 1 5.8926 6.3838 3.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348298542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -93.101950 kcal Electronic energy + Delta-G solvation = -21650.354571 eV Core-core repulsion = 18463.228315 eV Total energy + Delta-G solvation = -3187.126256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34752 -39.28401 -38.29284 -36.31457 -34.68942 -32.31795 -31.69706 -28.60507 -27.82229 -27.04053 -26.38415 -23.94021 -22.91074 -20.44871 -20.33671 -19.46624 -18.36101 -18.12766 -17.25815 -17.04245 -16.73277 -16.33030 -15.68019 -15.63752 -15.35713 -15.14963 -14.91441 -14.49080 -13.97133 -13.73615 -13.42085 -13.34581 -13.26879 -13.15584 -13.03659 -12.95820 -12.69059 -12.55980 -12.24972 -11.94200 -11.87258 -11.54411 -11.25359 -11.18759 -11.02333 -10.85577 -10.77114 -10.52099 -9.58397 -9.00736 -8.53184 -6.23725 0.97006 1.29368 1.44692 1.52575 1.62773 2.10268 2.23890 2.67491 2.84938 3.27029 3.56032 3.75071 3.83927 3.86100 4.01040 4.07221 4.11372 4.20942 4.39213 4.40257 4.45481 4.51533 4.61917 4.66518 4.70138 4.85993 4.89333 4.93866 4.97219 5.06875 5.11737 5.18063 5.30279 5.39940 5.63254 5.69095 5.72810 6.08825 6.32549 6.91936 6.94845 7.18954 8.59604 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.004805 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.453821 B = 5825.521646 C = 6559.304877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.117 3.883 3 H 0.081 0.919 4 C 0.065 3.935 5 O -0.591 6.591 6 N -0.589 5.589 7 C 0.124 3.876 8 C -0.124 4.124 9 C -0.118 4.118 10 C -0.138 4.138 11 C -0.137 4.137 12 C 0.536 3.464 13 O -0.555 6.555 14 C -0.103 4.103 15 S -0.174 6.174 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.048 3.952 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.256 1.256 23 H -0.238 1.238 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.393 0.607 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.031 0.969 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -20.622 -11.883 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.013 4.013 5 O -0.399 6.399 6 N -0.322 5.322 7 C 0.002 3.998 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.175 4.175 11 C -0.175 4.175 12 C 0.323 3.677 13 O -0.433 6.433 14 C -0.254 4.254 15 S 0.053 5.947 16 C -0.676 4.676 17 H 0.077 0.923 18 C -0.157 4.157 19 N -0.555 5.555 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.180 1.180 23 H -0.162 1.162 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.243 0.757 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.015 -21.008 -9.966 25.729 hybrid contribution 0.330 1.149 -0.907 1.500 sum -10.685 -19.859 -10.873 25.035 Atomic orbital electron populations 1.22066 0.91258 1.04093 1.03828 1.21584 0.96244 0.97033 0.83756 0.90042 1.22689 0.81205 1.00642 0.96756 1.86594 1.20497 1.81538 1.51273 1.47800 1.49340 1.12619 1.22401 1.21627 0.98743 0.78683 1.00743 1.23140 0.95753 0.95417 0.99994 1.22824 0.96054 0.93730 1.02927 1.22821 0.97808 0.95692 1.01199 1.22855 0.98214 0.97427 0.98998 1.19842 0.78057 0.87732 0.82034 1.90651 1.50739 1.68749 1.33146 1.23251 1.02936 0.96405 1.02811 1.84622 1.59654 1.08791 1.41665 1.22442 1.32913 0.93606 1.18686 0.92296 1.25535 0.96209 0.94340 0.99641 1.70013 1.38971 1.05147 1.41329 0.85874 0.80366 0.80124 0.80042 1.18754 1.17962 1.16247 0.92427 0.88851 0.90043 0.91133 0.90318 0.75743 0.87206 0.92077 0.87911 0.89364 0.89638 0.91376 0.89704 0.92196 0.95037 0.88329 0.87850 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.17 71.98 0.66 -1.42 16 2 C 0.12 2.39 2.84 44.99 0.13 2.52 16 3 H 0.08 2.03 5.75 -2.39 -0.01 2.02 16 4 C 0.07 0.99 5.67 71.98 0.41 1.40 16 5 O -0.59 -12.47 12.55 -148.98 -1.87 -14.34 16 6 N -0.59 -15.85 2.31 -797.85 -1.84 -17.69 16 7 C 0.12 2.70 4.65 86.38 0.40 3.11 16 8 C -0.12 -2.54 3.47 -10.21 -0.04 -2.57 16 9 C -0.12 -1.75 7.64 31.12 0.24 -1.51 16 10 C -0.14 -2.58 8.08 31.12 0.25 -2.32 16 11 C -0.14 -3.71 6.83 31.18 0.21 -3.50 16 12 C 0.54 20.55 7.67 87.66 0.67 21.22 16 13 O -0.55 -25.10 14.44 -3.02 -0.04 -25.14 16 14 C -0.10 -4.37 4.55 71.24 0.32 -4.05 16 15 S -0.17 -9.35 18.55 -56.49 -1.05 -10.40 16 16 C -0.53 -32.15 10.04 67.95 0.68 -31.46 16 17 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 18 C 0.05 2.91 5.50 84.86 0.47 3.38 16 19 N -0.92 -57.09 13.97 21.65 0.30 -56.78 16 20 Si 0.91 46.48 27.74 68.60 1.90 48.38 16 21 H -0.26 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.24 -12.18 6.74 99.48 0.67 -11.51 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.79 6.61 -2.38 -0.02 0.77 16 27 H 0.07 0.80 6.26 -2.39 -0.01 0.79 16 28 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.39 4.67 9.12 -74.06 -0.68 3.99 16 30 H 0.11 1.56 6.37 -2.39 -0.02 1.55 16 31 H 0.06 1.63 7.21 -2.39 -0.02 1.61 16 32 H 0.10 2.02 4.93 -2.38 -0.01 2.00 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.90 7.66 -2.39 -0.02 1.89 16 38 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 4.12 7.38 -2.40 -0.02 4.10 16 40 H 0.10 4.10 8.09 -2.39 -0.02 4.08 16 41 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -78.55 337.43 2.13 -76.42 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.32 Total: 14.76 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.41 Total: -15.21 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.54 Total: -74.47 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.91 Total: -39.48 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.90 Total: 48.38 kcal Atomic # 16 Polarization: -9.35 SS G_CDS: -1.05 Total: -10.40 kcal Total: -78.55 2.13 -76.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348298542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.684 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds