Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47302 * 2 1 4 4 O 1.21235 * 119.99583 * 0.02562 * 3 2 1 5 5 C 1.47286 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.39881 * 120.01645 * 180.02562 * 5 3 2 7 7 C 1.37695 * 119.97597 * 179.74801 * 6 5 3 8 8 C 1.39702 * 120.01745 * 0.25239 * 7 6 5 9 9 C 1.47852 * 119.97307 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99764 * 141.04170 * 9 8 7 11 11 N 1.34780 * 119.99703 * 321.03512 * 9 8 7 12 12 C 1.36661 * 119.99623 * 185.00212 * 11 9 8 13 13 H 1.07994 * 119.99727 * 223.03381 * 12 11 9 14 14 C 1.39202 * 120.00094 * 43.03100 * 12 11 9 15 15 N 1.31258 * 120.00240 * 13.00432 * 14 12 11 16 16 Si 1.86807 * 120.00068 * 192.99699 * 14 12 11 17 17 H 1.48503 * 109.46847 * 90.00599 * 16 14 12 18 18 H 1.48500 * 109.46869 * 210.00196 * 16 14 12 19 19 H 1.48495 * 109.47069 * 330.00715 * 16 14 12 20 20 C 1.46496 * 120.00156 * 5.00028 * 11 9 8 21 21 C 1.53006 * 117.49770 * 182.89244 * 20 11 9 22 22 C 1.53002 * 117.49775 * 114.23399 * 20 11 9 23 23 C 1.39693 * 120.04769 * 0.02562 * 8 7 6 24 24 C 1.37688 * 120.02304 * 359.97438 * 23 8 7 25 25 H 1.08995 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46577 * 299.99931 * 1 2 3 27 27 H 1.08998 * 109.47211 * 59.99252 * 1 2 3 28 28 H 1.09001 * 109.46738 * 240.00596 * 2 1 3 29 29 H 1.08992 * 109.47513 * 120.00478 * 2 1 3 30 30 H 1.08001 * 120.01667 * 0.02562 * 6 5 3 31 31 H 1.07992 * 119.99067 * 180.27707 * 7 6 5 32 32 H 0.97002 * 120.00303 * 184.97625 * 15 14 12 33 33 H 1.08994 * 115.55173 * 328.56459 * 20 11 9 34 34 H 1.09003 * 117.49838 * 0.02562 * 21 20 11 35 35 H 1.08993 * 117.50147 * 145.02208 * 21 20 11 36 36 H 1.08995 * 117.50126 * 214.98076 * 22 20 11 37 37 H 1.09008 * 117.49722 * 359.97438 * 22 20 11 38 38 H 1.07998 * 119.99175 * 180.02562 * 23 8 7 39 39 H 1.08000 * 120.01180 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2446 2.3423 0.0005 5 6 3.4805 1.6899 -0.0006 6 6 3.9472 3.0086 0.0000 7 6 5.3012 3.2591 0.0047 8 6 6.2085 2.1969 0.0036 9 6 7.6621 2.4671 0.0081 10 8 8.4077 1.7711 0.6698 11 7 8.1606 3.4848 -0.7215 12 6 9.5121 3.6720 -0.7992 13 1 9.9247 4.6670 -0.7217 14 6 10.3568 2.5802 -0.9781 15 7 9.8601 1.4160 -1.3256 16 14 12.1976 2.7718 -0.7238 17 1 12.5340 2.4842 0.6937 18 1 12.9208 1.8218 -1.6068 19 1 12.6011 4.1617 -1.0561 20 6 7.2537 4.3903 -1.4312 21 6 7.8822 5.4845 -2.2966 22 6 7.2087 5.8488 -0.9711 23 6 5.7434 0.8797 -0.0028 24 6 4.3899 0.6270 -0.0075 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.2459 3.8299 0.0012 31 1 5.6617 4.2771 0.0096 32 1 10.4379 0.6388 -1.3800 33 1 6.3229 3.9442 -1.7814 34 1 8.9704 5.5303 -2.3381 35 1 7.3647 5.7584 -3.2159 36 1 6.2485 6.3623 -1.0190 37 1 7.8536 6.1345 -0.1400 38 1 6.4456 0.0592 -0.0032 39 1 4.0305 -0.3914 -0.0129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348338513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -4.822694 kcal Electronic energy + Delta-G solvation = -22398.554071 eV Core-core repulsion = 19079.811940 eV Total energy + Delta-G solvation = -3318.742131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04645 -39.06430 -37.38324 -36.09480 -33.14077 -32.92883 -31.49172 -30.64094 -30.50231 -26.21839 -24.73827 -23.31360 -22.10462 -21.69751 -21.27547 -19.81052 -19.41402 -17.37291 -16.66492 -16.23315 -15.50657 -15.48417 -14.88997 -14.71723 -14.23288 -14.21710 -13.73710 -13.38762 -13.29052 -13.15318 -12.97291 -12.38866 -12.31891 -12.00960 -11.87134 -11.65761 -11.30921 -11.16725 -11.00906 -10.97569 -10.84030 -10.66385 -10.26364 -10.02236 -9.83166 -9.62522 -8.86003 -8.68761 -8.56990 -8.14645 -7.18898 -6.20083 -3.99839 0.75194 1.67612 2.46492 3.25846 3.31742 3.33889 3.83395 4.00426 4.13550 4.31166 4.67882 4.76449 4.82264 4.97378 5.02171 5.15044 5.20854 5.26026 5.42325 5.50018 5.54933 5.60112 5.65448 5.73540 5.76963 5.82754 5.89714 6.02040 6.09919 6.14365 6.29182 6.35318 6.51864 6.60656 6.67286 6.84112 6.86416 7.14344 7.49772 7.56342 8.13037 8.91359 9.02913 9.49773 10.14400 10.85550 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.004330 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.408972 B = 6464.804394 C = 7292.905583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.172 4.172 3 C 0.399 3.601 4 O -0.462 6.462 5 C -0.182 4.182 6 C -0.070 4.070 7 C -0.123 4.123 8 C -0.055 4.055 9 C 0.509 3.491 10 O -0.524 6.524 11 N -0.413 5.413 12 C -0.339 4.339 13 H 0.083 0.917 14 C 0.065 3.935 15 N -0.827 5.827 16 Si 0.915 3.085 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.065 3.935 21 C -0.174 4.174 22 C -0.209 4.209 23 C -0.090 4.090 24 C -0.081 4.081 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.678 -0.449 -0.234 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.278 3.722 4 O -0.338 6.338 5 C -0.183 4.183 6 C -0.088 4.088 7 C -0.142 4.142 8 C -0.059 4.059 9 C 0.297 3.703 10 O -0.402 6.402 11 N -0.132 5.132 12 C -0.466 4.466 13 H 0.100 0.900 14 C -0.146 4.146 15 N -0.461 5.461 16 Si 0.741 3.259 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.041 4.041 21 C -0.211 4.211 22 C -0.248 4.248 23 C -0.109 4.109 24 C -0.099 4.099 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.153 0.847 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.615 -0.526 -0.004 12.626 hybrid contribution 0.995 -0.075 -0.016 0.998 sum -11.620 -0.601 -0.019 11.636 Atomic orbital electron populations 1.21587 0.93869 1.01600 1.02968 1.21997 0.98064 0.96112 1.04740 1.22550 0.88015 0.90981 0.70653 1.90477 1.58466 1.47873 1.37016 1.20436 0.94356 0.94607 1.08912 1.21269 0.95459 0.95836 0.96214 1.21756 0.92362 1.00068 0.99981 1.20894 0.95995 0.93660 0.95340 1.17731 0.85285 0.84411 0.82879 1.90622 1.58816 1.48144 1.42647 1.42602 1.04788 1.25433 1.40382 1.18975 0.79875 0.94716 1.52990 0.89957 1.25292 0.99689 0.95479 0.94114 1.69768 1.37058 1.00089 1.39171 0.86155 0.83329 0.77960 0.78435 1.20246 1.21102 1.19669 1.22028 0.96099 0.86306 0.99643 1.23140 1.01739 1.02899 0.93334 1.23404 1.02038 1.00129 0.99231 1.21251 0.95001 0.96678 0.97978 1.21297 0.92757 0.98204 0.97679 0.92182 0.92223 0.92201 0.88281 0.88304 0.85227 0.84107 0.92258 0.87166 0.87434 0.89588 0.89436 0.88840 0.84688 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.17 -1.59 5.02 -27.88 -0.14 -1.73 16 3 C 0.40 5.21 7.12 -30.63 -0.22 4.99 16 4 O -0.46 -7.19 15.96 5.60 0.09 -7.10 16 5 C -0.18 -2.63 5.87 -104.99 -0.62 -3.25 16 6 C -0.07 -1.07 9.58 -39.17 -0.38 -1.45 16 7 C -0.12 -2.12 7.47 -39.23 -0.29 -2.42 16 8 C -0.05 -1.12 5.36 -104.87 -0.56 -1.68 16 9 C 0.51 12.91 6.48 -12.32 -0.08 12.83 16 10 O -0.52 -15.36 14.63 5.29 0.08 -15.28 16 11 N -0.41 -10.15 2.84 -108.81 -0.31 -10.46 16 12 C -0.34 -8.99 7.99 -15.04 -0.12 -9.11 16 13 H 0.08 2.10 7.15 -52.49 -0.38 1.72 16 14 C 0.07 1.78 4.56 -17.44 -0.08 1.70 16 15 N -0.83 -23.80 11.38 55.51 0.63 -23.17 16 16 Si 0.91 21.20 29.58 -169.99 -5.03 16.17 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.07 1.28 4.33 -67.93 -0.29 0.98 16 21 C -0.17 -3.03 9.80 -26.69 -0.26 -3.29 16 22 C -0.21 -3.43 9.37 -26.69 -0.25 -3.68 16 23 C -0.09 -1.63 9.61 -39.24 -0.38 -2.01 16 24 C -0.08 -1.15 9.45 -39.17 -0.37 -1.52 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.13 1.82 7.64 -52.49 -0.40 1.42 16 31 H 0.14 2.33 5.11 -52.49 -0.27 2.06 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.11 2.04 5.93 -51.93 -0.31 1.73 16 34 H 0.11 2.06 6.68 -51.93 -0.35 1.72 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.14 2.56 8.05 -52.49 -0.42 2.13 16 39 H 0.13 1.36 7.03 -52.49 -0.37 0.99 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -32.46 327.75 -8.29 -40.75 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.00 Total: 4.72 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.70 Total: -10.57 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.32 Total: -33.63 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.17 Total: -22.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.46 -8.29 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348338513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.926 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds