Wall clock time and date at job start Tue Mar 31 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47302 * 2 1 4 4 O 1.21235 * 119.99583 * 0.02562 * 3 2 1 5 5 C 1.47286 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.39881 * 120.01645 * 180.02562 * 5 3 2 7 7 C 1.37695 * 119.97597 * 179.74801 * 6 5 3 8 8 C 1.39702 * 120.01745 * 0.25239 * 7 6 5 9 9 C 1.47852 * 119.97307 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99764 * 141.04170 * 9 8 7 11 11 N 1.34780 * 119.99703 * 321.03512 * 9 8 7 12 12 C 1.36661 * 119.99623 * 185.00212 * 11 9 8 13 13 H 1.07994 * 119.99727 * 223.03381 * 12 11 9 14 14 C 1.39202 * 120.00094 * 43.03100 * 12 11 9 15 15 N 1.31258 * 120.00240 * 13.00432 * 14 12 11 16 16 Si 1.86807 * 120.00068 * 192.99699 * 14 12 11 17 17 H 1.48503 * 109.46847 * 90.00599 * 16 14 12 18 18 H 1.48500 * 109.46869 * 210.00196 * 16 14 12 19 19 H 1.48495 * 109.47069 * 330.00715 * 16 14 12 20 20 C 1.46496 * 120.00156 * 5.00028 * 11 9 8 21 21 C 1.53006 * 117.49770 * 182.89244 * 20 11 9 22 22 C 1.53002 * 117.49775 * 114.23399 * 20 11 9 23 23 C 1.39693 * 120.04769 * 0.02562 * 8 7 6 24 24 C 1.37688 * 120.02304 * 359.97438 * 23 8 7 25 25 H 1.08995 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46577 * 299.99931 * 1 2 3 27 27 H 1.08998 * 109.47211 * 59.99252 * 1 2 3 28 28 H 1.09001 * 109.46738 * 240.00596 * 2 1 3 29 29 H 1.08992 * 109.47513 * 120.00478 * 2 1 3 30 30 H 1.08001 * 120.01667 * 0.02562 * 6 5 3 31 31 H 1.07992 * 119.99067 * 180.27707 * 7 6 5 32 32 H 0.97002 * 120.00303 * 184.97625 * 15 14 12 33 33 H 1.08994 * 115.55173 * 328.56459 * 20 11 9 34 34 H 1.09003 * 117.49838 * 0.02562 * 21 20 11 35 35 H 1.08993 * 117.50147 * 145.02208 * 21 20 11 36 36 H 1.08995 * 117.50126 * 214.98076 * 22 20 11 37 37 H 1.09008 * 117.49722 * 359.97438 * 22 20 11 38 38 H 1.07998 * 119.99175 * 180.02562 * 23 8 7 39 39 H 1.08000 * 120.01180 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2446 2.3423 0.0005 5 6 3.4805 1.6899 -0.0006 6 6 3.9472 3.0086 0.0000 7 6 5.3012 3.2591 0.0047 8 6 6.2085 2.1969 0.0036 9 6 7.6621 2.4671 0.0081 10 8 8.4077 1.7711 0.6698 11 7 8.1606 3.4848 -0.7215 12 6 9.5121 3.6720 -0.7992 13 1 9.9247 4.6670 -0.7217 14 6 10.3568 2.5802 -0.9781 15 7 9.8601 1.4160 -1.3256 16 14 12.1976 2.7718 -0.7238 17 1 12.5340 2.4842 0.6937 18 1 12.9208 1.8218 -1.6068 19 1 12.6011 4.1617 -1.0561 20 6 7.2537 4.3903 -1.4312 21 6 7.8822 5.4845 -2.2966 22 6 7.2087 5.8488 -0.9711 23 6 5.7434 0.8797 -0.0028 24 6 4.3899 0.6270 -0.0075 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.2459 3.8299 0.0012 31 1 5.6617 4.2771 0.0096 32 1 10.4379 0.6388 -1.3800 33 1 6.3229 3.9442 -1.7814 34 1 8.9704 5.5303 -2.3381 35 1 7.3647 5.7584 -3.2159 36 1 6.2485 6.3623 -1.0190 37 1 7.8536 6.1345 -0.1400 38 1 6.4456 0.0592 -0.0032 39 1 4.0305 -0.3914 -0.0129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348338513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:38 Heat of formation + Delta-G solvation = -23.767151 kcal Electronic energy + Delta-G solvation = -22399.375565 eV Core-core repulsion = 19079.811940 eV Total energy + Delta-G solvation = -3319.563625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36456 -40.50529 -38.76527 -37.80897 -34.87515 -33.98358 -33.09914 -32.04724 -31.93242 -27.74878 -26.20085 -24.54641 -23.47851 -23.04485 -22.76195 -21.44678 -20.56792 -18.98848 -17.97879 -17.86662 -16.94890 -16.48494 -16.40189 -16.28263 -15.74212 -15.55606 -15.35576 -14.82202 -14.69972 -14.41819 -14.22487 -13.82791 -13.50636 -13.40490 -13.08166 -12.88579 -12.83321 -12.74340 -12.59799 -12.27480 -12.10645 -12.06360 -11.97578 -11.59391 -11.30879 -10.81525 -10.71016 -10.18190 -9.97700 -9.80455 -9.10252 -8.22299 -6.06708 -0.50651 0.38927 1.28612 1.37452 1.43689 1.49322 2.22177 2.37949 2.80818 2.98971 3.02540 3.08787 3.36450 3.78571 3.90469 3.96404 4.06789 4.08452 4.21464 4.29458 4.32846 4.38070 4.40824 4.52295 4.75049 4.84628 4.85753 4.97133 5.02663 5.06465 5.10856 5.18990 5.25346 5.33130 5.37826 5.40026 5.44590 5.51553 5.83256 6.13568 6.53977 6.94033 7.11492 7.57303 8.24389 8.82571 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.004330 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.408972 B = 6464.804394 C = 7292.905583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.169 4.169 3 C 0.403 3.597 4 O -0.487 6.487 5 C -0.174 4.174 6 C -0.069 4.069 7 C -0.116 4.116 8 C -0.088 4.088 9 C 0.497 3.503 10 O -0.583 6.583 11 N -0.428 5.428 12 C -0.352 4.352 13 H 0.085 0.915 14 C 0.013 3.987 15 N -0.866 5.866 16 Si 0.974 3.026 17 H -0.288 1.288 18 H -0.281 1.281 19 H -0.252 1.252 20 C 0.035 3.965 21 C -0.169 4.169 22 C -0.180 4.180 23 C -0.106 4.106 24 C -0.058 4.058 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.261 0.739 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 -0.070 -0.705 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.206 4.206 3 C 0.283 3.717 4 O -0.365 6.365 5 C -0.176 4.176 6 C -0.087 4.087 7 C -0.134 4.134 8 C -0.092 4.092 9 C 0.287 3.713 10 O -0.465 6.465 11 N -0.146 5.146 12 C -0.480 4.480 13 H 0.103 0.897 14 C -0.193 4.193 15 N -0.502 5.502 16 Si 0.799 3.201 17 H -0.215 1.215 18 H -0.206 1.206 19 H -0.175 1.175 20 C -0.070 4.070 21 C -0.206 4.206 22 C -0.218 4.218 23 C -0.125 4.125 24 C -0.076 4.076 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.203 -0.096 -0.506 15.212 hybrid contribution 1.609 -0.148 0.155 1.623 sum -13.594 -0.244 -0.350 13.601 Atomic orbital electron populations 1.21605 0.93645 1.02852 1.01966 1.22097 0.98235 0.93331 1.06887 1.22955 0.86698 0.92601 0.69402 1.90485 1.58683 1.49171 1.38155 1.20826 0.95721 0.94257 1.06752 1.21480 0.94658 0.97135 0.95419 1.21688 0.92673 0.99366 0.99715 1.20606 0.93530 0.95686 0.99346 1.18551 0.87280 0.83710 0.81780 1.90552 1.60968 1.50062 1.44960 1.42793 1.04942 1.26209 1.40680 1.19245 0.81493 0.94761 1.52498 0.89693 1.26163 1.03840 0.95298 0.94035 1.69886 1.38178 1.00686 1.41401 0.85240 0.78547 0.78927 0.77429 1.21505 1.20599 1.17514 1.22235 0.96130 0.86882 1.01717 1.23211 1.00848 1.01369 0.95209 1.23429 1.03352 0.97070 0.97968 1.21241 0.96676 0.95297 0.99256 1.21584 0.90558 1.00399 0.95072 0.89811 0.93275 0.93243 0.85924 0.85947 0.83511 0.83654 0.92915 0.86029 0.89661 0.86365 0.85386 0.90219 0.86634 0.80869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 71.98 0.66 -1.38 16 2 C -0.17 -2.35 5.02 29.85 0.15 -2.20 16 3 C 0.40 9.08 7.12 28.07 0.20 9.28 16 4 O -0.49 -13.78 15.96 -2.89 -0.05 -13.82 16 5 C -0.17 -4.51 5.87 -20.10 -0.12 -4.63 16 6 C -0.07 -1.96 9.58 22.54 0.22 -1.74 16 7 C -0.12 -3.90 7.47 22.50 0.17 -3.73 16 8 C -0.09 -3.68 5.36 -20.03 -0.11 -3.78 16 9 C 0.50 26.44 6.48 86.79 0.56 27.01 16 10 O -0.58 -36.36 14.63 -3.98 -0.06 -36.42 16 11 N -0.43 -21.76 2.84 -616.41 -1.75 -23.51 16 12 C -0.35 -19.40 7.99 84.17 0.67 -18.73 16 13 H 0.09 4.46 7.15 -2.91 -0.02 4.44 16 14 C 0.01 0.74 4.56 85.01 0.39 1.13 16 15 N -0.87 -52.45 11.38 21.70 0.25 -52.20 16 16 Si 0.97 45.07 29.58 68.60 2.03 47.10 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 20 C 0.04 1.36 4.33 44.99 0.19 1.56 16 21 C -0.17 -5.68 9.80 30.62 0.30 -5.38 16 22 C -0.18 -5.56 9.37 30.62 0.29 -5.27 16 23 C -0.11 -3.85 9.61 22.49 0.22 -3.64 16 24 C -0.06 -1.50 9.45 22.54 0.21 -1.29 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 28 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.12 1.23 8.09 -2.39 -0.02 1.21 16 30 H 0.15 3.69 7.64 -2.91 -0.02 3.67 16 31 H 0.15 4.64 5.11 -2.91 -0.01 4.63 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.12 4.40 5.93 -2.39 -0.01 4.38 16 34 H 0.08 3.27 6.68 -2.39 -0.02 3.25 16 35 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.12 4.61 8.05 -2.91 -0.02 4.59 16 39 H 0.17 2.86 7.03 -2.91 -0.02 2.84 16 Total: -1.00 -76.20 327.75 5.49 -70.71 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.06 Total: 20.95 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.00 Total: -12.81 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.51 Total: -75.71 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.10 Total: -50.24 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.20 5.49 -70.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348338513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.944 kcal (2) G-P(sol) polarization free energy of solvation -76.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds