Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99891 * 2 1 4 4 O 1.20821 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47093 * 187.22117 * 5 3 2 7 7 H 1.09001 * 109.40599 * 299.23953 * 6 5 3 8 8 C 1.53245 * 109.40575 * 59.07998 * 6 5 3 9 9 S 1.81898 * 108.50506 * 182.12017 * 8 6 5 10 10 C 1.81896 * 101.91672 * 308.69838 * 9 8 6 11 11 C 1.53244 * 108.50517 * 51.30419 * 10 9 8 12 12 N 1.46470 * 109.40486 * 179.47920 * 6 5 3 13 13 C 1.46899 * 111.00154 * 42.11673 * 12 6 5 14 14 H 1.08997 * 109.46657 * 316.43804 * 13 12 6 15 15 C 1.53000 * 109.46697 * 196.44122 * 13 12 6 16 16 C 1.53001 * 109.47355 * 76.44261 * 13 12 6 17 17 C 1.50703 * 109.46682 * 292.46008 * 16 13 12 18 18 H 1.08002 * 120.00273 * 354.48004 * 17 16 13 19 19 C 1.37876 * 119.99637 * 174.47702 * 17 16 13 20 20 N 1.31520 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47359 * 60.00483 * 21 19 17 23 23 H 1.48501 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47062 * 299.99795 * 21 19 17 25 25 H 1.09001 * 109.46829 * 59.99855 * 1 2 3 26 26 H 1.09001 * 109.47356 * 300.00155 * 1 2 3 27 27 H 1.08997 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47588 * 307.21897 * 5 3 2 29 29 H 1.08997 * 109.47005 * 67.22435 * 5 3 2 30 30 H 1.09001 * 109.63529 * 301.82966 * 8 6 5 31 31 H 1.09008 * 109.63104 * 62.42269 * 8 6 5 32 32 H 1.09006 * 109.63154 * 171.01181 * 10 9 8 33 33 H 1.08998 * 109.63199 * 291.39836 * 10 9 8 34 34 H 1.08999 * 109.40659 * 58.11615 * 11 10 9 35 35 H 1.09003 * 109.40828 * 177.95794 * 11 10 9 36 36 H 1.09008 * 109.46549 * 184.03114 * 15 13 12 37 37 H 1.08995 * 109.47491 * 304.02792 * 15 13 12 38 38 H 1.09002 * 109.47466 * 64.03451 * 15 13 12 39 39 H 1.08999 * 109.46914 * 52.46008 * 16 13 12 40 40 H 1.08994 * 109.47184 * 172.46120 * 16 13 12 41 41 H 0.96998 * 119.99701 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0006 2.7307 0.1818 7 1 3.6164 3.3288 -0.6445 8 6 3.4407 3.2684 1.5031 9 16 3.9178 5.0164 1.6635 10 6 5.7110 4.9451 1.3668 11 6 5.9583 4.1765 0.0643 12 7 5.4634 2.8041 0.1946 13 6 6.0433 1.9351 -0.8382 14 1 5.5256 0.9759 -0.8383 15 6 7.5281 1.7134 -0.5432 16 6 5.8889 2.5983 -2.2083 17 6 4.4294 2.6487 -2.5803 18 1 3.6946 2.1694 -1.9504 19 6 4.0322 3.3068 -3.7249 20 7 4.9269 3.8909 -4.4918 21 14 2.2231 3.3687 -4.1865 22 1 1.4587 4.0387 -3.1039 23 1 2.0608 4.1294 -5.4515 24 1 1.7119 1.9868 -4.3714 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9614 0.6733 0.8192 29 1 3.9503 0.8964 -0.9467 30 1 2.3540 3.1840 1.5017 31 1 3.8542 2.6982 2.3351 32 1 6.1077 5.9563 1.2764 33 1 6.1993 4.4330 2.1959 34 1 5.4369 4.6733 -0.7539 35 1 7.0275 4.1562 -0.1469 36 1 7.9747 1.1281 -1.3471 37 1 8.0323 2.6770 -0.4721 38 1 7.6352 1.1768 0.3995 39 1 6.2891 3.6114 -2.1687 40 1 6.4344 2.0211 -2.9548 41 1 4.6474 4.3535 -5.2972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351184600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = -68.538871 kcal Electronic energy + Delta-G solvation = -22820.439459 eV Core-core repulsion = 19634.378339 eV Total energy + Delta-G solvation = -3186.061121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44896 -38.75786 -36.29034 -33.38638 -32.79066 -31.81426 -28.83510 -27.70494 -27.57102 -26.73760 -23.18436 -22.98641 -21.31015 -20.38843 -18.39329 -17.50117 -16.99431 -16.38245 -16.23454 -15.94199 -15.22645 -14.76261 -14.39754 -13.89341 -13.76347 -13.34403 -13.11827 -12.69670 -12.63564 -12.47594 -12.05653 -11.96773 -11.88481 -11.73216 -11.59683 -11.20850 -11.07257 -10.95239 -10.65903 -10.55775 -10.49282 -10.31251 -10.01320 -9.96105 -9.51855 -9.20851 -8.97783 -8.42740 -7.51525 -7.19881 -6.09127 -4.11195 2.24406 2.50957 2.90011 2.98820 3.29595 3.34114 3.42780 4.39746 4.43069 5.04522 5.17477 5.17812 5.25875 5.28322 5.29068 5.47362 5.56941 5.61090 5.66131 5.69024 5.75765 5.87403 6.02909 6.08272 6.13386 6.14961 6.27052 6.51091 6.55084 6.65363 6.70318 6.78164 6.93446 7.36660 7.50518 7.70418 7.87458 7.91390 8.03841 8.25729 8.91803 9.53549 11.01310 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.009765 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.536595 B = 2866.710890 C = 4019.745238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.500 6.500 5 C -0.118 4.118 6 C 0.093 3.907 7 H 0.107 0.893 8 C -0.073 4.073 9 S -0.283 6.283 10 C -0.071 4.071 11 C 0.056 3.944 12 N -0.532 5.532 13 C 0.069 3.931 14 H 0.077 0.923 15 C -0.138 4.138 16 C -0.007 4.007 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.069 3.931 20 N -0.888 5.888 21 Si 0.873 3.127 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.278 1.278 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.016 0.984 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -5.560 10.820 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.387 6.387 5 C -0.157 4.157 6 C -0.016 4.016 7 H 0.125 0.875 8 C -0.222 4.222 9 S -0.056 6.056 10 C -0.220 4.220 11 C -0.073 4.073 12 N -0.257 5.257 13 C -0.038 4.038 14 H 0.095 0.905 15 C -0.196 4.196 16 C -0.045 4.045 17 C -0.574 4.574 18 H 0.085 0.915 19 C -0.134 4.134 20 N -0.526 5.526 21 Si 0.701 3.299 22 H -0.194 1.194 23 H -0.212 1.212 24 H -0.204 1.204 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.859 -4.388 11.351 12.311 hybrid contribution -0.766 -0.574 -1.454 1.741 sum -2.625 -4.962 9.897 11.378 Atomic orbital electron populations 1.23205 0.77014 1.03247 1.02455 1.86511 1.22966 1.33978 1.84496 1.23915 0.92400 0.81105 0.71980 1.90642 1.67257 1.36019 1.44779 1.21907 0.86675 1.00073 1.07042 1.21767 0.88786 0.94009 0.97071 0.87524 1.23798 1.04719 0.93329 1.00347 1.86673 1.10405 1.14502 1.94051 1.23520 0.93509 1.03484 1.01496 1.22161 1.01046 0.89004 0.95074 1.61582 1.06049 1.09108 1.48954 1.22005 0.93569 0.96340 0.91889 0.90478 1.21830 0.96425 1.00951 1.00344 1.19784 0.97170 0.96778 0.90733 1.21481 0.92841 1.34979 1.08086 0.91492 1.24912 0.96841 0.95243 0.96361 1.69941 1.33230 1.35061 1.14371 0.86917 0.86371 0.78357 0.78301 1.19367 1.21199 1.20366 0.91996 0.92116 0.88429 0.88065 0.84365 0.86864 0.90502 0.88377 0.89931 0.91381 0.90113 0.92773 0.93209 0.93432 0.95345 0.96547 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.53 10.57 -39.26 -0.41 -5.94 16 3 C 0.46 8.06 7.44 36.00 0.27 8.33 16 4 O -0.50 -9.99 13.66 -18.75 -0.26 -10.25 16 5 C -0.12 -1.96 3.54 -27.88 -0.10 -2.06 16 6 C 0.09 1.72 0.84 -67.82 -0.06 1.66 16 7 H 0.11 2.46 5.39 -51.93 -0.28 2.18 16 8 C -0.07 -1.25 5.65 37.28 0.21 -1.04 16 9 S -0.28 -4.98 22.39 -107.50 -2.41 -7.39 16 10 C -0.07 -1.10 6.69 37.28 0.25 -0.85 16 11 C 0.06 1.00 3.95 -3.93 -0.02 0.98 16 12 N -0.53 -9.34 4.22 -219.11 -0.92 -10.26 16 13 C 0.07 1.26 2.34 -67.71 -0.16 1.10 16 14 H 0.08 1.37 5.16 -51.93 -0.27 1.10 16 15 C -0.14 -2.15 9.29 37.16 0.35 -1.80 16 16 C -0.01 -0.15 4.04 -27.88 -0.11 -0.27 16 17 C -0.54 -13.65 6.87 -34.44 -0.24 -13.88 16 18 H 0.07 1.62 3.22 -52.49 -0.17 1.46 16 19 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 21 Si 0.87 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.14 2.48 4.39 -51.93 -0.23 2.25 16 30 H 0.11 2.04 5.68 -51.93 -0.30 1.74 16 31 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.47 6.97 -51.93 -0.36 1.10 16 35 H 0.08 1.35 6.02 -51.93 -0.31 1.03 16 36 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.05 0.77 6.34 -51.93 -0.33 0.44 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.71 6.20 -51.93 -0.32 0.39 16 40 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -29.54 320.70 -8.02 -37.55 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.93 Total: 4.20 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 1.36 Total: -4.55 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.19 Total: -35.15 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.67 Total: -16.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.41 Total: -7.39 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.54 -8.02 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351184600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.987 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds