Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99891 * 2 1 4 4 O 1.20821 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47093 * 187.22117 * 5 3 2 7 7 H 1.09001 * 109.40599 * 299.23953 * 6 5 3 8 8 C 1.53245 * 109.40575 * 59.07998 * 6 5 3 9 9 S 1.81898 * 108.50506 * 182.12017 * 8 6 5 10 10 C 1.81896 * 101.91672 * 308.69838 * 9 8 6 11 11 C 1.53244 * 108.50517 * 51.30419 * 10 9 8 12 12 N 1.46470 * 109.40486 * 179.47920 * 6 5 3 13 13 C 1.46899 * 111.00154 * 42.11673 * 12 6 5 14 14 H 1.08997 * 109.46657 * 316.43804 * 13 12 6 15 15 C 1.53000 * 109.46697 * 196.44122 * 13 12 6 16 16 C 1.53001 * 109.47355 * 76.44261 * 13 12 6 17 17 C 1.50703 * 109.46682 * 292.46008 * 16 13 12 18 18 H 1.08002 * 120.00273 * 354.48004 * 17 16 13 19 19 C 1.37876 * 119.99637 * 174.47702 * 17 16 13 20 20 N 1.31520 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47359 * 60.00483 * 21 19 17 23 23 H 1.48501 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47062 * 299.99795 * 21 19 17 25 25 H 1.09001 * 109.46829 * 59.99855 * 1 2 3 26 26 H 1.09001 * 109.47356 * 300.00155 * 1 2 3 27 27 H 1.08997 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47588 * 307.21897 * 5 3 2 29 29 H 1.08997 * 109.47005 * 67.22435 * 5 3 2 30 30 H 1.09001 * 109.63529 * 301.82966 * 8 6 5 31 31 H 1.09008 * 109.63104 * 62.42269 * 8 6 5 32 32 H 1.09006 * 109.63154 * 171.01181 * 10 9 8 33 33 H 1.08998 * 109.63199 * 291.39836 * 10 9 8 34 34 H 1.08999 * 109.40659 * 58.11615 * 11 10 9 35 35 H 1.09003 * 109.40828 * 177.95794 * 11 10 9 36 36 H 1.09008 * 109.46549 * 184.03114 * 15 13 12 37 37 H 1.08995 * 109.47491 * 304.02792 * 15 13 12 38 38 H 1.09002 * 109.47466 * 64.03451 * 15 13 12 39 39 H 1.08999 * 109.46914 * 52.46008 * 16 13 12 40 40 H 1.08994 * 109.47184 * 172.46120 * 16 13 12 41 41 H 0.96998 * 119.99701 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0006 2.7307 0.1818 7 1 3.6164 3.3288 -0.6445 8 6 3.4407 3.2684 1.5031 9 16 3.9178 5.0164 1.6635 10 6 5.7110 4.9451 1.3668 11 6 5.9583 4.1765 0.0643 12 7 5.4634 2.8041 0.1946 13 6 6.0433 1.9351 -0.8382 14 1 5.5256 0.9759 -0.8383 15 6 7.5281 1.7134 -0.5432 16 6 5.8889 2.5983 -2.2083 17 6 4.4294 2.6487 -2.5803 18 1 3.6946 2.1694 -1.9504 19 6 4.0322 3.3068 -3.7249 20 7 4.9269 3.8909 -4.4918 21 14 2.2231 3.3687 -4.1865 22 1 1.4587 4.0387 -3.1039 23 1 2.0608 4.1294 -5.4515 24 1 1.7119 1.9868 -4.3714 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9614 0.6733 0.8192 29 1 3.9503 0.8964 -0.9467 30 1 2.3540 3.1840 1.5017 31 1 3.8542 2.6982 2.3351 32 1 6.1077 5.9563 1.2764 33 1 6.1993 4.4330 2.1959 34 1 5.4369 4.6733 -0.7539 35 1 7.0275 4.1562 -0.1469 36 1 7.9747 1.1281 -1.3471 37 1 8.0323 2.6770 -0.4721 38 1 7.6352 1.1768 0.3995 39 1 6.2891 3.6114 -2.1687 40 1 6.4344 2.0211 -2.9548 41 1 4.6474 4.3535 -5.2972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351184600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = -86.737604 kcal Electronic energy + Delta-G solvation = -22821.228616 eV Core-core repulsion = 19634.378339 eV Total energy + Delta-G solvation = -3186.850277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80978 -40.21048 -37.60167 -35.18205 -34.34393 -33.41233 -30.11468 -29.37143 -29.05216 -27.90404 -25.03976 -24.36225 -22.75610 -21.80245 -19.90320 -18.90196 -18.68729 -17.88465 -17.63358 -17.24300 -16.68461 -16.60768 -15.91767 -15.38441 -15.04129 -14.87198 -14.42706 -14.31398 -13.93660 -13.89585 -13.69697 -13.40908 -13.25441 -13.15560 -12.96522 -12.92735 -12.59152 -12.50797 -12.43428 -12.21814 -11.83148 -11.76971 -11.75850 -11.34840 -11.18805 -10.81232 -10.59535 -10.51774 -9.09649 -8.60836 -8.21599 -6.23920 0.90352 1.15591 1.25879 1.30740 1.37891 1.62546 1.72846 2.33743 2.98212 3.16223 3.72598 3.78760 3.95533 4.17846 4.26054 4.28919 4.29618 4.31329 4.33777 4.48562 4.55079 4.64509 4.67510 4.73611 4.75021 4.80201 4.89096 5.06335 5.13353 5.24465 5.31989 5.38835 5.41210 5.53409 5.61322 5.82819 6.17849 6.27370 6.29575 6.72579 6.89660 7.42050 8.89783 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.009765 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.536595 B = 2866.710890 C = 4019.745238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.533 6.533 5 C -0.115 4.115 6 C 0.097 3.903 7 H 0.055 0.945 8 C -0.060 4.060 9 S -0.323 6.323 10 C -0.055 4.055 11 C 0.060 3.940 12 N -0.513 5.513 13 C 0.074 3.926 14 H 0.089 0.911 15 C -0.130 4.130 16 C -0.001 4.001 17 C -0.524 4.524 18 H 0.079 0.921 19 C 0.017 3.983 20 N -0.925 5.925 21 Si 0.919 3.081 22 H -0.283 1.283 23 H -0.285 1.285 24 H -0.267 1.267 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.020 0.980 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.004 0.996 40 H -0.006 1.006 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -7.406 12.968 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.422 6.422 5 C -0.153 4.153 6 C -0.013 4.013 7 H 0.073 0.927 8 C -0.208 4.208 9 S -0.096 6.096 10 C -0.203 4.203 11 C -0.070 4.070 12 N -0.237 5.237 13 C -0.034 4.034 14 H 0.107 0.893 15 C -0.188 4.188 16 C -0.039 4.039 17 C -0.562 4.562 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.566 5.566 21 Si 0.746 3.254 22 H -0.209 1.209 23 H -0.211 1.211 24 H -0.192 1.192 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.039 0.961 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.022 0.978 40 H 0.012 0.988 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.546 -6.266 13.503 14.966 hybrid contribution -0.906 -0.022 -2.098 2.285 sum -2.452 -6.288 11.405 13.253 Atomic orbital electron populations 1.23551 0.75090 1.05798 1.02236 1.86494 1.24815 1.32548 1.83838 1.24025 0.92682 0.81248 0.71204 1.90641 1.67989 1.37205 1.46405 1.21846 0.86562 0.99148 1.07761 1.21559 0.89012 0.94574 0.96176 0.92675 1.23690 1.04176 0.92776 1.00189 1.86840 1.13004 1.15795 1.93959 1.23525 0.91594 1.04443 1.00732 1.22105 1.01083 0.88837 0.94934 1.61724 1.05455 1.08870 1.47674 1.21966 0.96088 0.96255 0.89050 0.89282 1.21759 0.93780 1.01438 1.01822 1.19717 0.95239 0.95588 0.93385 1.21981 0.94460 1.32752 1.07020 0.90327 1.25540 0.99374 0.95996 0.97182 1.70041 1.34490 1.36972 1.15082 0.86195 0.83210 0.78576 0.77427 1.20898 1.21051 1.19209 0.93244 0.91405 0.84513 0.84299 0.85607 0.87872 0.87957 0.86737 0.87434 0.96112 0.88871 0.92501 0.93221 0.90716 0.97778 0.98795 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.19 10.57 -51.43 -0.54 -10.73 16 3 C 0.46 15.51 7.44 71.23 0.53 16.04 16 4 O -0.53 -21.16 13.66 21.98 0.30 -20.86 16 5 C -0.11 -3.57 3.54 29.85 0.11 -3.47 16 6 C 0.10 3.48 0.84 45.08 0.04 3.52 16 7 H 0.06 2.59 5.39 -2.39 -0.01 2.58 16 8 C -0.06 -1.96 5.65 72.06 0.41 -1.55 16 9 S -0.32 -11.07 22.39 -56.49 -1.27 -12.33 16 10 C -0.05 -1.58 6.69 72.06 0.48 -1.09 16 11 C 0.06 2.07 3.95 86.47 0.34 2.41 16 12 N -0.51 -17.09 4.22 -847.12 -3.57 -20.66 16 13 C 0.07 2.58 2.34 44.92 0.10 2.68 16 14 H 0.09 2.94 5.16 -2.39 -0.01 2.92 16 15 C -0.13 -3.69 9.29 71.98 0.67 -3.02 16 16 C 0.00 -0.05 4.04 29.85 0.12 0.07 16 17 C -0.52 -27.17 6.87 25.60 0.18 -26.99 16 18 H 0.08 3.85 3.22 -2.91 -0.01 3.84 16 19 C 0.02 0.98 5.46 84.65 0.46 1.44 16 20 N -0.92 -55.19 13.29 21.45 0.28 -54.91 16 21 Si 0.92 45.75 29.54 68.60 2.03 47.78 16 22 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 25 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 27 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.13 4.30 4.39 -2.39 -0.01 4.29 16 30 H 0.10 3.64 5.68 -2.39 -0.01 3.62 16 31 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 32 H 0.11 2.93 8.14 -2.38 -0.02 2.92 16 33 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.02 0.92 6.97 -2.39 -0.02 0.90 16 35 H 0.09 2.98 6.02 -2.39 -0.01 2.97 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.05 1.40 6.34 -2.39 -0.02 1.39 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.00 0.20 6.20 -2.39 -0.01 0.19 16 40 H -0.01 -0.32 8.13 -2.39 -0.02 -0.34 16 41 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -66.23 320.70 2.90 -63.33 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.04 Total: 16.58 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.63 Total: -8.19 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -3.29 Total: -75.57 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.24 Total: -31.59 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.27 Total: -12.33 kcal Total: -66.23 2.90 -63.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351184600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.408 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds