Wall clock time and date at job start Tue Mar 31 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00147 * 2 1 4 4 O 1.20828 * 119.99782 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00322 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47237 * 186.12148 * 5 3 2 7 7 H 1.09001 * 109.40663 * 184.36782 * 6 5 3 8 8 C 1.53243 * 109.40918 * 64.52280 * 6 5 3 9 9 S 1.81907 * 108.50667 * 177.87574 * 8 6 5 10 10 C 1.81903 * 101.91164 * 51.30939 * 9 8 6 11 11 C 1.53246 * 108.50266 * 308.69423 * 10 9 8 12 12 N 1.46466 * 109.86416 * 62.00648 * 11 10 9 13 13 C 1.46901 * 111.00396 * 162.23643 * 12 11 10 14 14 H 1.08998 * 109.47279 * 168.06185 * 13 12 11 15 15 C 1.52999 * 109.46602 * 288.06150 * 13 12 11 16 16 C 1.52996 * 109.47317 * 48.05795 * 13 12 11 17 17 C 1.50704 * 109.47031 * 67.25389 * 16 13 12 18 18 H 1.08000 * 119.99681 * 5.52436 * 17 16 13 19 19 C 1.37876 * 120.00287 * 185.52220 * 17 16 13 20 20 N 1.31509 * 120.00476 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99718 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46631 * 90.00097 * 21 19 17 23 23 H 1.48496 * 109.47020 * 210.00211 * 21 19 17 24 24 H 1.48503 * 109.46935 * 330.00440 * 21 19 17 25 25 H 1.09003 * 109.47424 * 60.00011 * 1 2 3 26 26 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47042 * 300.00449 * 1 2 3 28 28 H 1.08995 * 109.47369 * 66.11380 * 5 3 2 29 29 H 1.09004 * 109.46779 * 306.11803 * 5 3 2 30 30 H 1.08997 * 109.63794 * 297.58375 * 8 6 5 31 31 H 1.09008 * 109.63355 * 57.97909 * 8 6 5 32 32 H 1.08999 * 109.63135 * 68.39514 * 10 9 8 33 33 H 1.08993 * 109.63216 * 188.98961 * 10 9 8 34 34 H 1.09006 * 109.40669 * 182.12269 * 11 10 9 35 35 H 1.09005 * 109.40714 * 301.88089 * 11 10 9 36 36 H 1.09003 * 109.47243 * 185.18038 * 15 13 12 37 37 H 1.09007 * 109.47124 * 305.17748 * 15 13 12 38 38 H 1.09001 * 109.47351 * 65.17651 * 15 13 12 39 39 H 1.09002 * 109.47060 * 187.25435 * 16 13 12 40 40 H 1.09000 * 109.47066 * 307.25834 * 16 13 12 41 41 H 0.96994 * 120.00392 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0006 2.7338 0.1534 7 1 5.0858 2.7989 0.0751 8 6 3.5568 3.2553 1.5243 9 16 4.1398 4.9688 1.7067 10 6 3.5347 5.7365 0.1726 11 6 3.9815 4.8734 -1.0123 12 7 3.3887 3.5382 -0.9069 13 6 3.4398 2.8361 -2.1962 14 1 3.1932 1.7849 -2.0476 15 6 2.4315 3.4653 -3.1597 16 6 4.8476 2.9515 -2.7843 17 6 5.8155 2.1787 -1.9258 18 1 5.4504 1.5849 -1.1008 19 6 7.1670 2.2296 -2.1935 20 7 8.0117 1.5549 -1.4446 21 14 7.7984 3.2561 -3.6209 22 1 8.0925 4.6328 -3.1485 23 1 9.0380 2.6427 -4.1614 24 1 6.7663 3.3086 -4.6874 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9506 0.8786 -0.9404 29 1 3.9611 0.6888 0.8293 30 1 2.4692 3.2295 1.5915 31 1 3.9871 2.6336 2.3095 32 1 2.4463 5.7919 0.1954 33 1 3.9533 6.7380 0.0745 34 1 3.6586 5.3405 -1.9427 35 1 5.0682 4.7885 -1.0091 36 1 2.4031 2.8881 -4.0840 37 1 1.4426 3.4660 -2.7013 38 1 2.7304 4.4900 -3.3804 39 1 4.8534 2.5443 -3.7954 40 1 5.1445 3.9999 -2.8131 41 1 8.9624 1.5904 -1.6332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351184604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:38 Heat of formation + Delta-G solvation = -60.564407 kcal Electronic energy + Delta-G solvation = -23023.836827 eV Core-core repulsion = 19838.121505 eV Total energy + Delta-G solvation = -3185.715322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42309 -38.60847 -35.98707 -33.39528 -32.78333 -31.86337 -28.70648 -28.13442 -27.69059 -26.72918 -22.87157 -22.79610 -21.44321 -20.14652 -18.64612 -17.43251 -16.86736 -16.49034 -15.97070 -15.90656 -15.17544 -14.82318 -14.26680 -13.88043 -13.70602 -13.42191 -12.91830 -12.71488 -12.57595 -12.34894 -12.28543 -12.02394 -11.87118 -11.73435 -11.66183 -11.30359 -11.14574 -10.91141 -10.71716 -10.47172 -10.38723 -10.26558 -9.89245 -9.75635 -9.69491 -9.19478 -9.03805 -8.62255 -7.42374 -7.15326 -6.14261 -4.13280 2.27272 2.69483 2.95845 3.09197 3.23825 3.32940 3.35843 4.37065 4.40772 5.14462 5.18277 5.21496 5.23369 5.28674 5.38944 5.44122 5.56424 5.65110 5.67608 5.74850 5.84958 5.90781 6.01495 6.09243 6.13177 6.18405 6.26789 6.45942 6.50912 6.60822 6.68640 6.73414 6.90605 7.09680 7.13215 7.65526 7.82737 7.85774 8.23775 8.36838 8.84435 9.48126 10.96173 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.007693 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.228959 B = 3639.017153 C = 4340.830362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.370 6.370 3 C 0.453 3.547 4 O -0.474 6.474 5 C -0.116 4.116 6 C 0.094 3.906 7 H 0.114 0.886 8 C -0.072 4.072 9 S -0.286 6.286 10 C -0.067 4.067 11 C 0.055 3.945 12 N -0.514 5.514 13 C 0.087 3.913 14 H 0.073 0.927 15 C -0.139 4.139 16 C -0.045 4.045 17 C -0.539 4.539 18 H 0.092 0.908 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.873 3.127 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.268 1.268 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 0.924 2.427 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.287 6.287 3 C 0.295 3.705 4 O -0.359 6.359 5 C -0.155 4.155 6 C -0.016 4.016 7 H 0.131 0.869 8 C -0.221 4.221 9 S -0.059 6.059 10 C -0.216 4.216 11 C -0.075 4.075 12 N -0.238 5.238 13 C -0.021 4.021 14 H 0.091 0.909 15 C -0.196 4.196 16 C -0.084 4.084 17 C -0.576 4.576 18 H 0.110 0.890 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.701 3.299 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.192 1.192 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.760 1.757 3.446 12.379 hybrid contribution 0.480 -0.081 -1.956 2.016 sum -11.280 1.675 1.489 11.501 Atomic orbital electron populations 1.23110 0.77536 1.02872 1.02091 1.86552 1.22543 1.34726 1.84918 1.24001 0.92389 0.81074 0.73046 1.90669 1.66584 1.35498 1.43108 1.21972 0.86897 0.99351 1.07318 1.21921 1.00985 0.89135 0.89509 0.86855 1.23715 1.04534 0.93652 1.00159 1.86558 1.77001 1.11510 1.30861 1.23461 1.03564 1.00391 0.94147 1.22166 0.99107 0.89826 0.96381 1.61561 1.55403 1.01872 1.05013 1.21685 0.95370 0.97222 0.87825 0.90929 1.21825 0.99396 1.00181 0.98244 1.20310 0.93495 0.97267 0.97279 1.21449 0.90808 1.29668 1.15697 0.89050 1.24971 0.97037 0.94941 0.95726 1.69875 1.02899 1.41576 1.38887 0.86880 0.78452 0.80834 0.83774 1.20351 1.21497 1.19235 0.92262 0.88848 0.92433 0.84804 0.88080 0.88802 0.88709 0.89748 0.88610 0.90598 0.91956 0.93226 0.92759 0.93463 0.96541 0.96357 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.43 10.57 -39.26 -0.41 -5.85 16 3 C 0.45 7.36 6.44 36.00 0.23 7.59 16 4 O -0.47 -8.41 12.78 -18.75 -0.24 -8.65 16 5 C -0.12 -1.96 4.19 -27.89 -0.12 -2.08 16 6 C 0.09 1.72 1.27 -67.82 -0.09 1.63 16 7 H 0.11 2.49 5.46 -51.93 -0.28 2.21 16 8 C -0.07 -1.21 5.67 37.28 0.21 -1.00 16 9 S -0.29 -4.94 22.40 -107.50 -2.41 -7.35 16 10 C -0.07 -1.06 6.69 37.28 0.25 -0.81 16 11 C 0.05 0.97 3.92 -3.93 -0.02 0.95 16 12 N -0.51 -9.31 2.72 -219.11 -0.60 -9.91 16 13 C 0.09 1.63 1.93 -67.71 -0.13 1.50 16 14 H 0.07 1.40 4.53 -51.93 -0.24 1.16 16 15 C -0.14 -2.30 9.16 37.16 0.34 -1.96 16 16 C -0.04 -0.98 3.07 -27.88 -0.09 -1.07 16 17 C -0.54 -13.41 7.47 -34.44 -0.26 -13.66 16 18 H 0.09 2.28 3.57 -52.49 -0.19 2.09 16 19 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 21 Si 0.87 20.82 27.36 -169.99 -4.65 16.17 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.23 6.70 56.52 0.38 -5.85 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 28 H 0.13 2.49 4.57 -51.93 -0.24 2.26 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.62 6.21 -51.93 -0.32 1.30 16 31 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.27 6.18 -51.93 -0.32 0.95 16 35 H 0.06 1.28 6.93 -51.93 -0.36 0.92 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 40 H 0.02 0.41 5.29 -51.93 -0.27 0.13 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -28.43 315.11 -7.40 -35.83 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.92 Total: 5.22 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 1.31 Total: -5.48 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.18 Total: -34.64 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.65 Total: -14.50 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.65 Total: 16.17 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.41 Total: -7.35 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.43 -7.40 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351184604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.738 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds