Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00147 * 2 1 4 4 O 1.20828 * 119.99782 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00322 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47237 * 186.12148 * 5 3 2 7 7 H 1.09001 * 109.40663 * 184.36782 * 6 5 3 8 8 C 1.53243 * 109.40918 * 64.52280 * 6 5 3 9 9 S 1.81907 * 108.50667 * 177.87574 * 8 6 5 10 10 C 1.81903 * 101.91164 * 51.30939 * 9 8 6 11 11 C 1.53246 * 108.50266 * 308.69423 * 10 9 8 12 12 N 1.46466 * 109.86416 * 62.00648 * 11 10 9 13 13 C 1.46901 * 111.00396 * 162.23643 * 12 11 10 14 14 H 1.08998 * 109.47279 * 168.06185 * 13 12 11 15 15 C 1.52999 * 109.46602 * 288.06150 * 13 12 11 16 16 C 1.52996 * 109.47317 * 48.05795 * 13 12 11 17 17 C 1.50704 * 109.47031 * 67.25389 * 16 13 12 18 18 H 1.08000 * 119.99681 * 5.52436 * 17 16 13 19 19 C 1.37876 * 120.00287 * 185.52220 * 17 16 13 20 20 N 1.31509 * 120.00476 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99718 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46631 * 90.00097 * 21 19 17 23 23 H 1.48496 * 109.47020 * 210.00211 * 21 19 17 24 24 H 1.48503 * 109.46935 * 330.00440 * 21 19 17 25 25 H 1.09003 * 109.47424 * 60.00011 * 1 2 3 26 26 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47042 * 300.00449 * 1 2 3 28 28 H 1.08995 * 109.47369 * 66.11380 * 5 3 2 29 29 H 1.09004 * 109.46779 * 306.11803 * 5 3 2 30 30 H 1.08997 * 109.63794 * 297.58375 * 8 6 5 31 31 H 1.09008 * 109.63355 * 57.97909 * 8 6 5 32 32 H 1.08999 * 109.63135 * 68.39514 * 10 9 8 33 33 H 1.08993 * 109.63216 * 188.98961 * 10 9 8 34 34 H 1.09006 * 109.40669 * 182.12269 * 11 10 9 35 35 H 1.09005 * 109.40714 * 301.88089 * 11 10 9 36 36 H 1.09003 * 109.47243 * 185.18038 * 15 13 12 37 37 H 1.09007 * 109.47124 * 305.17748 * 15 13 12 38 38 H 1.09001 * 109.47351 * 65.17651 * 15 13 12 39 39 H 1.09002 * 109.47060 * 187.25435 * 16 13 12 40 40 H 1.09000 * 109.47066 * 307.25834 * 16 13 12 41 41 H 0.96994 * 120.00392 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0006 2.7338 0.1534 7 1 5.0858 2.7989 0.0751 8 6 3.5568 3.2553 1.5243 9 16 4.1398 4.9688 1.7067 10 6 3.5347 5.7365 0.1726 11 6 3.9815 4.8734 -1.0123 12 7 3.3887 3.5382 -0.9069 13 6 3.4398 2.8361 -2.1962 14 1 3.1932 1.7849 -2.0476 15 6 2.4315 3.4653 -3.1597 16 6 4.8476 2.9515 -2.7843 17 6 5.8155 2.1787 -1.9258 18 1 5.4504 1.5849 -1.1008 19 6 7.1670 2.2296 -2.1935 20 7 8.0117 1.5549 -1.4446 21 14 7.7984 3.2561 -3.6209 22 1 8.0925 4.6328 -3.1485 23 1 9.0380 2.6427 -4.1614 24 1 6.7663 3.3086 -4.6874 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9506 0.8786 -0.9404 29 1 3.9611 0.6888 0.8293 30 1 2.4692 3.2295 1.5915 31 1 3.9871 2.6336 2.3095 32 1 2.4463 5.7919 0.1954 33 1 3.9533 6.7380 0.0745 34 1 3.6586 5.3405 -1.9427 35 1 5.0682 4.7885 -1.0091 36 1 2.4031 2.8881 -4.0840 37 1 1.4426 3.4660 -2.7013 38 1 2.7304 4.4900 -3.3804 39 1 4.8534 2.5443 -3.7954 40 1 5.1445 3.9999 -2.8131 41 1 8.9624 1.5904 -1.6332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351184604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -76.686805 kcal Electronic energy + Delta-G solvation = -23024.535946 eV Core-core repulsion = 19838.121505 eV Total energy + Delta-G solvation = -3186.414442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74897 -40.00569 -37.23911 -35.07667 -34.40105 -33.45124 -30.02146 -29.83351 -29.07239 -27.82332 -24.62434 -24.16941 -22.89369 -21.56243 -20.14521 -19.01539 -18.37287 -17.90733 -17.29862 -17.17522 -16.57629 -16.44783 -15.91570 -15.33472 -15.07026 -14.89777 -14.32078 -14.13657 -13.98359 -13.84339 -13.68518 -13.56786 -13.28884 -13.18169 -12.92958 -12.79061 -12.56944 -12.45839 -12.30989 -11.99289 -11.83119 -11.63467 -11.58211 -11.34352 -11.17304 -10.82652 -10.65434 -10.57080 -8.95105 -8.56817 -8.19298 -6.19152 0.93056 1.32644 1.37437 1.40659 1.44869 1.62532 1.92592 2.39131 2.96144 3.17482 3.79520 3.83358 4.02062 4.14453 4.24861 4.32940 4.38434 4.40347 4.42219 4.49439 4.52419 4.60609 4.69102 4.73514 4.74442 4.77235 4.85345 5.00918 5.04276 5.14406 5.21452 5.27800 5.41377 5.45158 5.57848 5.72463 6.31831 6.33150 6.38415 6.86192 6.98855 7.43472 8.92688 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.007693 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.228959 B = 3639.017153 C = 4340.830362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.463 3.537 4 O -0.489 6.489 5 C -0.115 4.115 6 C 0.100 3.900 7 H 0.072 0.928 8 C -0.061 4.061 9 S -0.311 6.311 10 C -0.055 4.055 11 C 0.055 3.945 12 N -0.507 5.507 13 C 0.089 3.911 14 H 0.068 0.932 15 C -0.130 4.130 16 C -0.042 4.042 17 C -0.525 4.525 18 H 0.085 0.915 19 C 0.021 3.979 20 N -0.939 5.939 21 Si 0.922 3.078 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.255 1.255 25 H 0.058 0.942 26 H 0.126 0.874 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.013 0.987 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 1.516 1.881 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.293 6.293 3 C 0.305 3.695 4 O -0.375 6.375 5 C -0.154 4.154 6 C -0.010 4.010 7 H 0.090 0.910 8 C -0.210 4.210 9 S -0.084 6.084 10 C -0.203 4.203 11 C -0.074 4.074 12 N -0.231 5.231 13 C -0.019 4.019 14 H 0.086 0.914 15 C -0.188 4.188 16 C -0.080 4.080 17 C -0.563 4.563 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.580 5.580 21 Si 0.748 3.252 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.179 1.179 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.817 2.347 2.888 14.309 hybrid contribution 1.028 -0.324 -1.744 2.050 sum -12.788 2.023 1.144 12.998 Atomic orbital electron populations 1.23438 0.75211 1.05160 1.02311 1.86522 1.24756 1.33573 1.84438 1.23608 0.91815 0.81370 0.72686 1.90656 1.66799 1.36058 1.44002 1.21817 0.88120 0.98553 1.06897 1.21685 0.98504 0.90259 0.90523 0.90992 1.23629 1.04403 0.93453 0.99472 1.86656 1.77555 1.12121 1.32093 1.23466 1.04051 1.00733 0.92076 1.22172 0.97145 0.90065 0.98049 1.61679 1.54860 1.01961 1.04575 1.21651 0.94098 0.97595 0.88543 0.91418 1.21741 0.98584 1.00536 0.97939 1.20285 0.94803 0.96439 0.96514 1.21854 0.91091 1.28273 1.15073 0.89759 1.25655 0.97737 0.96364 0.97956 1.69996 1.02946 1.44052 1.40976 0.86082 0.77999 0.79374 0.81700 1.20326 1.21933 1.17886 0.92298 0.85626 0.91968 0.86687 0.86755 0.88702 0.87695 0.88819 0.86488 0.89165 0.95164 0.92144 0.92341 0.92690 0.96889 0.96407 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.38 -10.35 10.57 -51.44 -0.54 -10.89 16 3 C 0.46 14.42 6.44 71.23 0.46 14.88 16 4 O -0.49 -16.46 12.78 21.96 0.28 -16.18 16 5 C -0.11 -3.85 4.19 29.85 0.12 -3.72 16 6 C 0.10 3.65 1.27 45.08 0.06 3.71 16 7 H 0.07 3.26 5.46 -2.39 -0.01 3.25 16 8 C -0.06 -2.01 5.67 72.06 0.41 -1.60 16 9 S -0.31 -10.48 22.40 -56.49 -1.27 -11.74 16 10 C -0.05 -1.63 6.69 72.06 0.48 -1.15 16 11 C 0.06 1.89 3.92 86.47 0.34 2.23 16 12 N -0.51 -17.81 2.72 -847.13 -2.30 -20.12 16 13 C 0.09 3.24 1.93 44.91 0.09 3.32 16 14 H 0.07 2.54 4.53 -2.39 -0.01 2.53 16 15 C -0.13 -3.98 9.16 71.98 0.66 -3.32 16 16 C -0.04 -1.79 3.07 29.85 0.09 -1.70 16 17 C -0.53 -26.45 7.47 25.60 0.19 -26.25 16 18 H 0.08 4.31 3.57 -2.91 -0.01 4.30 16 19 C 0.02 1.12 5.47 84.66 0.46 1.58 16 20 N -0.94 -55.05 13.96 21.45 0.30 -54.75 16 21 Si 0.92 43.03 27.36 68.60 1.88 44.91 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.25 -11.24 6.70 99.48 0.67 -10.57 16 25 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 26 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 28 H 0.12 4.34 4.57 -2.39 -0.01 4.33 16 29 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.09 3.14 6.21 -2.39 -0.01 3.13 16 31 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.09 2.81 6.18 -2.38 -0.01 2.80 16 35 H 0.03 1.23 6.93 -2.38 -0.02 1.22 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.05 1.58 6.70 -2.39 -0.02 1.57 16 39 H 0.01 0.56 7.57 -2.39 -0.02 0.55 16 40 H 0.02 0.77 5.29 -2.39 -0.01 0.76 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -60.72 315.11 3.90 -56.81 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.00 Total: 22.17 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 4.56 Total: -10.20 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -2.00 Total: -74.87 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.26 Total: -27.07 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.27 Total: -11.74 kcal Total: -60.72 3.90 -56.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351184604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.875 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds