Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99950 * 2 1 4 4 C 1.50693 * 109.47894 * 270.00900 * 3 2 1 5 5 H 1.08007 * 119.99673 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00493 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00078 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47074 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47261 * 119.99811 * 8 6 4 11 11 H 1.48494 * 109.47373 * 239.99681 * 8 6 4 12 12 C 1.34776 * 119.99898 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99476 * 185.09807 * 12 2 1 14 14 C 1.50694 * 120.00082 * 5.10426 * 12 2 1 15 15 C 1.50708 * 112.88048 * 294.71345 * 14 12 2 16 16 C 1.38243 * 119.99856 * 294.46487 * 15 14 12 17 17 C 1.38232 * 119.99765 * 179.73926 * 16 15 14 18 18 C 1.38241 * 119.99960 * 0.53621 * 17 16 15 19 19 C 1.38236 * 119.99865 * 359.74420 * 18 17 16 20 20 C 1.38228 * 119.99932 * 114.73888 * 15 14 12 21 21 C 1.53838 * 113.74743 * 66.12583 * 14 12 2 22 22 C 1.51579 * 86.75519 * 89.69798 * 21 14 12 23 23 O 1.20760 * 135.78192 * 205.15409 * 22 21 14 24 24 C 1.51578 * 88.43786 * 25.15923 * 22 21 14 25 25 H 1.09006 * 109.46664 * 268.25076 * 1 2 3 26 26 H 1.08998 * 109.47373 * 28.24802 * 1 2 3 27 27 H 1.09001 * 109.47492 * 148.25131 * 1 2 3 28 28 H 1.09008 * 109.47047 * 30.01201 * 3 2 1 29 29 H 1.09000 * 109.47183 * 150.00311 * 3 2 1 30 30 H 0.97000 * 120.00424 * 180.02562 * 7 6 4 31 31 H 1.08001 * 119.99560 * 0.02562 * 16 15 14 32 32 H 1.07996 * 119.99816 * 180.30093 * 17 16 15 33 33 H 1.07995 * 119.99840 * 179.76593 * 18 17 16 34 34 H 1.07999 * 119.99922 * 180.02562 * 19 18 17 35 35 H 1.08005 * 120.00197 * 0.02562 * 20 15 14 36 36 H 1.09003 * 113.66839 * 204.16930 * 21 14 12 37 37 H 1.08996 * 113.66328 * 335.23686 * 21 14 12 38 38 H 1.08996 * 113.67033 * 220.38191 * 24 22 21 39 39 H 1.09001 * 113.75758 * 89.31440 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7040 -1.4207 5 1 2.0979 1.0961 -2.2417 6 6 3.1267 2.8777 -1.6725 7 7 3.5541 3.6177 -0.6729 8 14 3.4385 3.4169 -3.4336 9 1 2.8603 2.4171 -4.3671 10 1 2.8014 4.7378 -3.6671 11 1 4.9011 3.5247 -3.6668 12 6 2.1388 -1.1672 -0.0005 13 8 3.3481 -1.1692 0.0928 14 6 1.3899 -2.4696 -0.1172 15 6 0.4997 -2.7419 1.0680 16 6 1.0558 -2.9559 2.3154 17 6 0.2391 -3.2002 3.4036 18 6 -1.1332 -3.2416 3.2423 19 6 -1.6890 -3.0334 1.9938 20 6 -0.8725 -2.7832 0.9067 21 6 0.6886 -2.6617 -1.4729 22 6 1.9737 -3.3097 -1.9485 23 8 2.5171 -3.4743 -3.0143 24 6 2.2811 -3.6616 -0.5066 25 1 -0.3633 -0.0314 1.0273 26 1 -0.3634 0.9052 -0.4864 27 1 -0.3634 -0.8739 -0.5407 28 1 1.6084 2.0284 0.5141 29 1 3.1499 1.1384 0.5138 30 1 4.0309 4.4436 -0.8500 31 1 2.1282 -2.9275 2.4406 32 1 0.6733 -3.3626 4.3790 33 1 -1.7711 -3.4363 4.0917 34 1 -2.7612 -3.0653 1.8679 35 1 -1.3068 -2.6208 -0.0688 36 1 -0.1586 -3.3464 -1.4342 37 1 0.4561 -1.7261 -1.9816 38 1 3.3293 -3.5303 -0.2380 39 1 1.8815 -4.6268 -0.1953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351810645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = -8.789069 kcal Electronic energy + Delta-G solvation = -23108.551868 eV Core-core repulsion = 19789.637741 eV Total energy + Delta-G solvation = -3318.914126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26285 -38.82872 -38.32762 -35.92531 -34.96416 -32.60778 -31.05926 -30.86988 -28.06074 -26.45596 -26.08017 -24.87312 -22.95030 -22.41922 -21.22833 -19.62781 -18.02359 -17.41150 -16.55774 -16.22105 -15.80695 -15.72279 -15.14082 -14.96818 -14.62195 -14.53080 -14.34905 -14.05828 -13.46494 -13.13794 -12.75235 -12.64845 -12.52080 -12.16449 -12.06317 -12.03036 -11.66973 -11.35533 -11.22361 -11.00591 -10.86905 -10.82321 -10.59589 -10.18680 -9.65603 -9.41120 -9.25281 -8.97513 -8.60830 -8.46448 -7.71455 -6.07437 -4.12779 1.23607 1.33088 1.97378 3.15122 3.28994 3.37157 3.41722 3.64994 3.74290 3.87057 4.29090 4.42553 4.65148 4.72625 4.85081 4.90835 4.96669 5.06158 5.24566 5.27471 5.32716 5.41262 5.51665 5.58394 5.67557 5.77509 5.88472 5.93245 5.93750 5.98021 6.18779 6.37859 6.43936 6.51199 6.89924 6.98972 7.38992 7.46768 7.54229 7.88493 8.18304 8.30937 8.81760 8.97753 9.52893 11.00633 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.005501 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.159816 B = 5088.640320 C = 5863.987387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.589 5.589 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.529 3.471 13 O -0.533 6.533 14 C -0.058 4.058 15 C -0.054 4.054 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.186 4.186 22 C 0.367 3.633 23 O -0.420 6.420 24 C -0.167 4.167 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 -14.947 6.366 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.314 3.686 13 O -0.411 6.411 14 C -0.062 4.062 15 C -0.054 4.054 16 C -0.122 4.122 17 C -0.134 4.134 18 C -0.141 4.141 19 C -0.136 4.136 20 C -0.131 4.131 21 C -0.223 4.223 22 C 0.240 3.760 23 O -0.290 6.290 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.502 -14.808 5.875 19.649 hybrid contribution 0.043 0.617 -0.744 0.968 sum -11.459 -14.191 5.131 18.948 Atomic orbital electron populations 1.21919 0.81326 1.02761 1.00720 1.48026 1.06285 1.07418 1.70250 1.19357 0.92667 0.77814 0.97637 1.21445 1.36727 1.06438 0.92143 0.92438 1.24922 0.95223 0.96332 0.97487 1.69940 1.38254 1.14320 1.30702 0.86453 0.78201 0.78354 0.84536 1.19713 1.20882 1.20782 1.19363 0.87311 0.83956 0.78011 1.90687 1.13657 1.86575 1.50140 1.20513 0.96613 0.95576 0.93485 1.19183 0.93112 0.99889 0.93261 1.21059 1.00450 0.98706 0.91972 1.21126 0.93714 1.00011 0.98580 1.21151 0.95096 1.00458 0.97370 1.21087 0.99635 1.00165 0.92760 1.21082 0.92537 1.00208 0.99299 1.24295 0.99567 1.03898 0.94575 1.25372 0.87262 0.74203 0.89141 1.90417 1.61019 1.47766 1.29832 1.23974 1.03485 0.98072 0.94954 0.93511 0.90775 0.91917 0.94795 0.93660 0.92702 0.85762 0.86034 0.86249 0.85983 0.85550 0.85398 0.87595 0.87040 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 8.74 59.85 0.52 1.74 16 2 N -0.59 -12.38 2.86 -182.96 -0.52 -12.90 16 3 C 0.24 6.39 5.19 -5.20 -0.03 6.36 16 4 C -0.53 -15.02 9.39 -34.45 -0.32 -15.35 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.53 10.80 6.25 -10.99 -0.07 10.73 16 13 O -0.53 -13.21 15.49 5.55 0.09 -13.13 16 14 C -0.06 -0.84 0.46 -156.02 -0.07 -0.91 16 15 C -0.05 -0.66 3.94 -104.62 -0.41 -1.07 16 16 C -0.10 -1.27 9.47 -39.58 -0.37 -1.65 16 17 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 18 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 19 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 20 C -0.11 -1.13 7.39 -39.59 -0.29 -1.42 16 21 C -0.19 -2.34 5.16 -27.02 -0.14 -2.48 16 22 C 0.37 5.73 8.86 -28.26 -0.25 5.48 16 23 O -0.42 -8.00 17.99 6.00 0.11 -7.89 16 24 C -0.17 -2.24 6.96 -27.01 -0.19 -2.43 16 25 H 0.05 0.68 7.95 -51.93 -0.41 0.27 16 26 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 27 H 0.06 0.81 3.15 -51.93 -0.16 0.64 16 28 H 0.03 0.90 8.07 -51.92 -0.42 0.48 16 29 H 0.05 1.34 7.36 -51.93 -0.38 0.95 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 1.03 5.74 -52.48 -0.30 0.73 16 36 H 0.13 1.10 6.74 -51.93 -0.35 0.75 16 37 H 0.11 1.46 6.94 -51.93 -0.36 1.10 16 38 H 0.11 1.70 7.34 -51.93 -0.38 1.31 16 39 H 0.12 1.20 8.09 -51.93 -0.42 0.78 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -34.73 325.70 -7.47 -42.20 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.85 Total: -0.53 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.92 Total: -3.87 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.21 Total: -38.78 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.19 Total: -21.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.73 -7.47 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351810645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.411 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds