Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99950 * 2 1 4 4 C 1.50693 * 109.47894 * 270.00900 * 3 2 1 5 5 H 1.08007 * 119.99673 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00493 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00078 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47074 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47261 * 119.99811 * 8 6 4 11 11 H 1.48494 * 109.47373 * 239.99681 * 8 6 4 12 12 C 1.34776 * 119.99898 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99476 * 185.09807 * 12 2 1 14 14 C 1.50694 * 120.00082 * 5.10426 * 12 2 1 15 15 C 1.50708 * 112.88048 * 294.71345 * 14 12 2 16 16 C 1.38243 * 119.99856 * 294.46487 * 15 14 12 17 17 C 1.38232 * 119.99765 * 179.73926 * 16 15 14 18 18 C 1.38241 * 119.99960 * 0.53621 * 17 16 15 19 19 C 1.38236 * 119.99865 * 359.74420 * 18 17 16 20 20 C 1.38228 * 119.99932 * 114.73888 * 15 14 12 21 21 C 1.53838 * 113.74743 * 66.12583 * 14 12 2 22 22 C 1.51579 * 86.75519 * 89.69798 * 21 14 12 23 23 O 1.20760 * 135.78192 * 205.15409 * 22 21 14 24 24 C 1.51578 * 88.43786 * 25.15923 * 22 21 14 25 25 H 1.09006 * 109.46664 * 268.25076 * 1 2 3 26 26 H 1.08998 * 109.47373 * 28.24802 * 1 2 3 27 27 H 1.09001 * 109.47492 * 148.25131 * 1 2 3 28 28 H 1.09008 * 109.47047 * 30.01201 * 3 2 1 29 29 H 1.09000 * 109.47183 * 150.00311 * 3 2 1 30 30 H 0.97000 * 120.00424 * 180.02562 * 7 6 4 31 31 H 1.08001 * 119.99560 * 0.02562 * 16 15 14 32 32 H 1.07996 * 119.99816 * 180.30093 * 17 16 15 33 33 H 1.07995 * 119.99840 * 179.76593 * 18 17 16 34 34 H 1.07999 * 119.99922 * 180.02562 * 19 18 17 35 35 H 1.08005 * 120.00197 * 0.02562 * 20 15 14 36 36 H 1.09003 * 113.66839 * 204.16930 * 21 14 12 37 37 H 1.08996 * 113.66328 * 335.23686 * 21 14 12 38 38 H 1.08996 * 113.67033 * 220.38191 * 24 22 21 39 39 H 1.09001 * 113.75758 * 89.31440 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7040 -1.4207 5 1 2.0979 1.0961 -2.2417 6 6 3.1267 2.8777 -1.6725 7 7 3.5541 3.6177 -0.6729 8 14 3.4385 3.4169 -3.4336 9 1 2.8603 2.4171 -4.3671 10 1 2.8014 4.7378 -3.6671 11 1 4.9011 3.5247 -3.6668 12 6 2.1388 -1.1672 -0.0005 13 8 3.3481 -1.1692 0.0928 14 6 1.3899 -2.4696 -0.1172 15 6 0.4997 -2.7419 1.0680 16 6 1.0558 -2.9559 2.3154 17 6 0.2391 -3.2002 3.4036 18 6 -1.1332 -3.2416 3.2423 19 6 -1.6890 -3.0334 1.9938 20 6 -0.8725 -2.7832 0.9067 21 6 0.6886 -2.6617 -1.4729 22 6 1.9737 -3.3097 -1.9485 23 8 2.5171 -3.4743 -3.0143 24 6 2.2811 -3.6616 -0.5066 25 1 -0.3633 -0.0314 1.0273 26 1 -0.3634 0.9052 -0.4864 27 1 -0.3634 -0.8739 -0.5407 28 1 1.6084 2.0284 0.5141 29 1 3.1499 1.1384 0.5138 30 1 4.0309 4.4436 -0.8500 31 1 2.1282 -2.9275 2.4406 32 1 0.6733 -3.3626 4.3790 33 1 -1.7711 -3.4363 4.0917 34 1 -2.7612 -3.0653 1.8679 35 1 -1.3068 -2.6208 -0.0688 36 1 -0.1586 -3.3464 -1.4342 37 1 0.4561 -1.7261 -1.9816 38 1 3.3293 -3.5303 -0.2380 39 1 1.8815 -4.6268 -0.1953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351810645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = -31.139332 kcal Electronic energy + Delta-G solvation = -23109.521048 eV Core-core repulsion = 19789.637741 eV Total energy + Delta-G solvation = -3319.883306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.49240 -39.94163 -39.66997 -37.20532 -36.72069 -34.73543 -31.82872 -31.75854 -29.99606 -27.76393 -27.28148 -26.42458 -24.56255 -23.22515 -22.40760 -20.94362 -19.40486 -18.75365 -18.39408 -17.47605 -17.39080 -16.82398 -16.57984 -16.29319 -16.19058 -15.66474 -15.52108 -15.34480 -14.67609 -14.34253 -14.21394 -13.92160 -13.73557 -13.54855 -13.51446 -13.15959 -13.10805 -13.02777 -12.77713 -12.55216 -12.37437 -12.26355 -11.87815 -11.76234 -11.68824 -10.85336 -10.69432 -10.52204 -9.73615 -9.57510 -9.48738 -8.27646 -6.42730 0.43054 0.57513 0.77310 1.32513 1.35497 1.46777 1.62463 2.18139 2.37066 2.67990 2.85955 3.02319 3.18374 3.54529 3.58256 3.68111 4.05909 4.18431 4.23331 4.33201 4.38836 4.47693 4.55830 4.65287 4.65830 4.74345 4.78188 4.84017 4.91763 4.97461 5.11378 5.17434 5.22938 5.49375 5.64088 5.69990 5.70939 5.77356 5.99299 6.16432 6.34011 6.61579 6.69146 7.19984 7.35081 8.79886 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.005501 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.159816 B = 5088.640320 C = 5863.987387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.264 1.264 11 H -0.282 1.282 12 C 0.518 3.482 13 O -0.593 6.593 14 C -0.049 4.049 15 C -0.067 4.067 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.166 4.166 22 C 0.352 3.648 23 O -0.466 6.466 24 C -0.160 4.160 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.026 0.974 29 H -0.003 1.003 30 H 0.268 0.732 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.184 0.816 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.317 -16.267 6.087 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.189 1.189 11 H -0.208 1.208 12 C 0.305 3.695 13 O -0.474 6.474 14 C -0.052 4.052 15 C -0.068 4.068 16 C -0.145 4.145 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.203 4.203 22 C 0.228 3.772 23 O -0.340 6.340 24 C -0.197 4.197 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.201 0.799 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.337 -16.139 5.621 22.963 hybrid contribution 1.211 1.012 -0.506 1.657 sum -14.126 -15.126 5.115 21.320 Atomic orbital electron populations 1.22192 0.77878 1.04262 1.02433 1.48016 1.08403 1.06004 1.70189 1.18798 0.91148 0.80185 0.96112 1.21690 1.37061 1.06662 0.92824 0.92959 1.25822 0.94786 0.96390 1.01877 1.70050 1.38772 1.14823 1.32938 0.85412 0.77932 0.78588 0.79181 1.19324 1.18925 1.20830 1.20449 0.87063 0.85732 0.76209 1.90648 1.16594 1.87738 1.52451 1.20193 0.97050 0.91975 0.96009 1.18991 0.93824 1.02127 0.91826 1.21037 0.99746 1.00457 0.93210 1.21314 0.94518 0.99931 0.98455 1.21528 0.94587 0.98870 0.98696 1.21484 1.01173 0.98357 0.91980 1.21335 0.91131 0.99256 1.01016 1.24398 0.99600 1.04359 0.91898 1.26048 0.88460 0.73542 0.89137 1.90392 1.62438 1.49717 1.31407 1.24100 1.02244 0.99845 0.93517 0.91722 0.91191 0.88333 0.95585 0.98458 0.92285 0.88171 0.84980 0.83675 0.82747 0.82971 0.79850 0.88245 0.89734 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.22 8.74 127.77 1.12 3.34 16 2 N -0.60 -25.62 2.86 -851.13 -2.43 -28.05 16 3 C 0.26 14.23 5.19 85.63 0.44 14.68 16 4 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.62 5.46 84.65 0.46 1.08 16 7 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 8 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 C 0.52 21.87 6.25 87.66 0.55 22.42 16 13 O -0.59 -31.57 15.49 -3.05 -0.05 -31.61 16 14 C -0.05 -1.36 0.46 -53.16 -0.02 -1.39 16 15 C -0.07 -1.48 3.94 -19.86 -0.08 -1.55 16 16 C -0.13 -2.99 9.47 22.27 0.21 -2.78 16 17 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 18 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 19 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 20 C -0.11 -1.64 7.39 22.27 0.16 -1.47 16 21 C -0.17 -3.70 5.16 30.41 0.16 -3.54 16 22 C 0.35 10.79 8.86 29.61 0.26 11.05 16 23 O -0.47 -18.07 17.99 -1.45 -0.03 -18.10 16 24 C -0.16 -4.21 6.96 30.41 0.21 -4.00 16 25 H 0.06 1.72 7.95 -2.38 -0.02 1.70 16 26 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 27 H 0.10 2.19 3.15 -2.39 -0.01 2.19 16 28 H 0.03 1.45 8.07 -2.38 -0.02 1.43 16 29 H 0.00 -0.17 7.36 -2.39 -0.02 -0.19 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.10 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.15 1.44 5.74 -2.91 -0.02 1.42 16 36 H 0.18 2.06 6.74 -2.39 -0.02 2.04 16 37 H 0.10 2.46 6.94 -2.39 -0.02 2.44 16 38 H 0.08 2.74 7.34 -2.39 -0.02 2.72 16 39 H 0.17 2.85 8.09 -2.39 -0.02 2.83 16 Total: -1.00 -82.25 325.70 5.26 -76.99 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.07 Total: 7.75 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.39 Total: 1.56 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.15 Total: -84.46 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.07 Total: -49.71 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -82.25 5.26 -76.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351810645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.849 kcal (2) G-P(sol) polarization free energy of solvation -82.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds