Wall clock time and date at job start Tue Mar 31 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46792 * 2 1 4 4 C 1.52994 * 109.47038 * 120.00217 * 2 1 3 5 5 C 1.50696 * 109.47353 * 184.99797 * 4 2 1 6 6 C 1.38257 * 120.00351 * 265.23271 * 5 4 2 7 7 C 1.38210 * 119.99952 * 180.25100 * 6 5 4 8 8 C 1.38261 * 120.00253 * 359.79082 * 7 6 5 9 9 C 1.38213 * 119.99740 * 359.95094 * 8 7 6 10 10 C 1.38217 * 119.99893 * 84.99626 * 5 4 2 11 11 C 1.50703 * 119.99908 * 0.02562 * 10 5 4 12 12 F 1.39905 * 109.47157 * 179.72409 * 11 10 5 13 13 F 1.39900 * 109.47159 * 59.72710 * 11 10 5 14 14 F 1.39897 * 109.47274 * 299.72401 * 11 10 5 15 15 N 1.46899 * 109.46967 * 239.99952 * 2 1 3 16 16 C 1.46900 * 111.00062 * 85.00035 * 15 2 1 17 17 C 1.50703 * 109.47386 * 179.97438 * 16 15 2 18 18 H 1.07995 * 119.99747 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00280 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99652 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00213 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46791 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47195 * 119.99966 * 21 19 17 24 24 H 1.48498 * 109.46893 * 239.99866 * 21 19 17 25 25 H 1.08994 * 109.47266 * 300.00349 * 1 2 3 26 26 H 1.09007 * 109.46827 * 59.99588 * 1 2 3 27 27 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47207 * 64.99559 * 4 2 1 29 29 H 1.09003 * 109.47268 * 304.99739 * 4 2 1 30 30 H 1.07995 * 119.99640 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.99867 * 179.76402 * 7 6 5 32 32 H 1.07998 * 119.99867 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.99740 * 179.97438 * 9 8 7 34 34 H 1.00895 * 111.00375 * 208.95320 * 15 2 1 35 35 H 1.09000 * 109.47502 * 300.00475 * 16 15 2 36 36 H 1.09002 * 109.47119 * 59.99659 * 16 15 2 37 37 H 0.96995 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 6 4.3290 -1.6305 0.8022 7 6 5.7064 -1.5354 0.8652 8 6 6.2972 -0.4227 1.4348 9 6 5.5104 0.5949 1.9403 10 6 4.1325 0.4999 1.8769 11 6 3.2746 1.6091 2.4291 12 9 4.0935 2.6176 2.9484 13 9 2.4561 1.1038 3.4450 14 9 2.4779 2.1355 1.4068 15 7 2.0197 -0.6925 -1.1994 16 6 2.0825 0.2226 -2.3469 17 6 2.5885 -0.5215 -3.5558 18 1 2.8380 -1.5695 -3.4794 19 6 2.7328 0.1356 -4.7593 20 7 2.4294 1.4119 -4.8521 21 14 3.3594 -0.7869 -6.2579 22 1 3.6279 -2.2009 -5.8921 23 1 2.3357 -0.7389 -7.3324 24 1 4.6133 -0.1542 -6.7401 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -1.7715 1.2055 29 1 1.6054 -0.2618 2.1369 30 1 3.8675 -2.4998 0.3575 31 1 6.3212 -2.3304 0.4698 32 1 7.3735 -0.3486 1.4843 33 1 5.9718 1.4639 2.3856 34 1 2.9173 -1.1205 -1.0288 35 1 1.0871 0.6164 -2.5525 36 1 2.7588 1.0462 -2.1182 37 1 2.5306 1.8741 -5.6989 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361115587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:44 Heat of formation + Delta-G solvation = -133.599579 kcal Electronic energy + Delta-G solvation = -23622.115789 eV Core-core repulsion = 19755.932733 eV Total energy + Delta-G solvation = -3866.183056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.16214 -47.67942 -47.56786 -39.69257 -36.50011 -33.23175 -32.14925 -31.56828 -29.91641 -26.84621 -25.98871 -25.49801 -22.50986 -22.01243 -21.35509 -19.76225 -18.43643 -18.37499 -18.21929 -16.44710 -15.95398 -15.45661 -15.00824 -14.88622 -14.64853 -14.45025 -14.28650 -14.09183 -13.95003 -13.71606 -13.56538 -13.34917 -12.81019 -12.69478 -12.40977 -12.15184 -11.83744 -11.63952 -11.53599 -11.39900 -11.07647 -10.90408 -10.65765 -10.56705 -10.17444 -9.84290 -9.22359 -9.12838 -8.77871 -8.45545 -7.22463 -6.00399 -4.02159 0.93107 1.23900 2.71872 3.31338 3.38491 3.43050 3.47511 3.76362 4.07795 4.44296 4.48360 4.67805 4.75672 4.90857 5.11945 5.27375 5.35289 5.38909 5.41527 5.53146 5.66549 5.83049 5.96543 6.06989 6.11923 6.20853 6.31356 6.34629 6.47402 6.63396 6.76561 6.81615 7.33796 7.48560 7.81861 8.17466 8.45315 8.66276 9.07468 9.62415 11.10751 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.005312 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.952185 B = 5269.680999 C = 5795.309652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.058 0.942 4 C -0.105 4.105 5 C -0.024 4.024 6 C -0.116 4.116 7 C -0.082 4.082 8 C -0.130 4.130 9 C -0.073 4.073 10 C -0.186 4.186 11 C 0.507 3.493 12 F -0.181 7.181 13 F -0.178 7.178 14 F -0.164 7.164 15 N -0.686 5.686 16 C 0.195 3.805 17 C -0.512 4.512 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.326 0.674 35 H 0.028 0.972 36 H -0.016 1.016 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -2.812 16.861 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.024 4.024 6 C -0.133 4.133 7 C -0.100 4.100 8 C -0.148 4.148 9 C -0.091 4.091 10 C -0.187 4.187 11 C 0.453 3.547 12 F -0.163 7.163 13 F -0.159 7.159 14 F -0.145 7.145 15 N -0.318 5.318 16 C 0.069 3.931 17 C -0.550 4.550 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.212 1.212 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.046 0.954 36 H 0.002 0.998 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.329 -2.871 16.576 17.370 hybrid contribution 0.998 0.440 -0.672 1.281 sum 5.327 -2.431 15.904 16.947 Atomic orbital electron populations 1.21724 0.94950 1.01657 1.00805 1.21777 0.95878 0.97096 0.89150 0.92483 1.21213 0.89443 1.03643 0.99984 1.19772 0.96887 0.92166 0.93608 1.21184 0.93592 0.99158 0.99413 1.21403 0.94976 0.97661 0.95923 1.21102 1.00084 0.93949 0.99668 1.20948 0.91604 0.99165 0.97411 1.19824 0.94501 0.95962 1.08415 1.18353 0.78707 0.81841 0.75774 1.93141 1.72514 1.63143 1.87478 1.93153 1.74227 1.87038 1.61495 1.93209 1.75016 1.87698 1.58594 1.60819 1.32359 1.34843 1.03819 1.19564 0.96432 0.90189 0.86940 1.21216 1.43096 0.96643 0.94084 0.92065 1.24990 0.95755 0.94883 0.98971 1.69981 1.48950 1.08977 1.25722 0.86461 0.78371 0.79938 0.82751 1.19693 1.21000 1.21151 0.93713 0.92201 0.92514 0.89345 0.90061 0.84298 0.85039 0.85103 0.84785 0.85547 0.95368 0.99784 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.42 37.16 0.35 -1.93 16 2 C 0.07 1.30 2.35 -67.71 -0.16 1.15 16 3 H 0.06 1.15 4.80 -51.93 -0.25 0.90 16 4 C -0.11 -1.55 4.31 -27.89 -0.12 -1.67 16 5 C -0.02 -0.35 4.69 -104.62 -0.49 -0.84 16 6 C -0.12 -1.52 8.11 -39.58 -0.32 -1.84 16 7 C -0.08 -0.93 10.05 -39.58 -0.40 -1.33 16 8 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 9 C -0.07 -0.90 9.43 -39.58 -0.37 -1.28 16 10 C -0.19 -2.64 5.37 -104.62 -0.56 -3.20 16 11 C 0.51 7.28 2.83 36.01 0.10 7.38 16 12 F -0.18 -2.45 15.97 2.25 0.04 -2.42 16 13 F -0.18 -2.43 15.31 2.25 0.03 -2.39 16 14 F -0.16 -2.70 13.65 2.25 0.03 -2.67 16 15 N -0.69 -14.86 6.30 -107.99 -0.68 -15.54 16 16 C 0.20 5.24 5.24 -4.97 -0.03 5.22 16 17 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 18 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 21 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.13 7.45 -51.92 -0.39 0.74 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.20 8.05 -51.93 -0.42 0.79 16 29 H 0.08 1.12 5.74 -51.93 -0.30 0.82 16 30 H 0.14 1.68 7.84 -52.49 -0.41 1.27 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.40 7.16 -52.49 -0.38 1.03 16 34 H 0.33 6.70 5.91 -39.29 -0.23 6.47 16 35 H 0.03 0.82 7.44 -51.93 -0.39 0.43 16 36 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -31.11 312.95 -7.37 -38.49 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.41 Total: 3.12 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.81 Total: -13.65 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.06 Total: -41.99 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.10 Total: -7.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.11 -7.37 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361115587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.115 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds